| mature miRNA: TTACCTATTCCACCAATTCCAT species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|11966428|gb|BE324595.2|BE324595 NF014E06PL1F1040 Phosphate starved leaf Medicago truncatula cDNA clone NF014E06PL 5', mRNA se TTACCTATTCCACCAATTCCAT EST sequence (targeted fragment marked with yellow): GCACCAGGCCGTCTAAACGCTAATAGCGGTAAAGAGAATGATAAGAAACTAAACAAAGTTCCTTTTATTAAAACATCTATGGTAATTATATTTCTTAATTCATTTTTCAAAATCTCAAACAACAAACAAAGCATAGCACAATTTGAGCGATTTTGCCCCGTTTTCCTCCTTTGTAATTTGGTAGTCTCCTTCCTCAGTTTCATCCAAATATATATTATTGTGACATCATTTATTAACTTAACACTCAATTAATGATTTTCCTTTAAAATTTAAAAATAAAACTCAAAAAAAATGTCAAAATGTAAACTCCTAAAAAAATGGAGACGGCAATTGTACGGTCGCTGTAGATAGAGGATGAAAAACACAATTAATCCTAATATATGCACTTGAATGACCTCTTTTCTCATATTGGACAGGGATATGCCTGAGCATAAGTTTATTGGGGAGATTGTTGAAAAAGTTTTAGGAAATATAGAACCTGTTGCATTGCCTGTTGGTGATTACAAAGTTGGATTGGAGCACCAAAAGCAACATGTGATTTCCCTTTTGAATGTTTGGGTCGGATGATAAAGCATGTATGGTAGGGATCCTACGGGATTGGTGGAATAGGGAAAACAACTCT | |||||||||
gi|11958050|gb|BE325283.2|BE325283 NF120D06ST1F1057 Developing stem Medicago truncatula cDNA clone NF120D06ST 5', mRNA sequence TTACCTATTCCACCAATTCCAT EST sequence (targeted fragment marked with yellow): ATGGGATTGGTGGAATAGGGAAAACTACTCTTGCTCTAGAAGTTTATAATTCGATTGTCCATCAATTTCAATGTTCCTGTTTTTTTGAAAAAGTCAGAGACTTTAAGGAAAGTGGGTTGATATATCTCCAAAAGATCCTTCTGTCTCAAATTGTTGGAGAGACGAACATGGAGATAACCAGTGTTAGACAAGGAGTTTCAATATTACAACAAAGGCTTCACCAAAAGAAGGTTCTTTTACTTCTGGATGATGTTGACAAGGATGAGCAATTAAAGGCTATTGCTGGAAGTTCCGAATGGTTTGGTCTAGGAAGTAGAGTCATCATCACGACTCGGGACAAAAGATTGCTAACATATCATGGGATTGAAAGAAGATATGAGGTGAAGGGATTGAACGATGCAGATGCTTTTGACTTGGTGGGATGGAAAGCTTTAAAAAATTATTATAGTCCAAGCTATAAAGATGTTTTATTAGAACAAAAGCAAGGAAGAGAATTGAATGCGAATGAATTGTGTAGACTGAAATATTTGAAGAAAGATGTACGTTTTTCAAGTTATGCGAATGTTTATAAAACGT | |||||||||
gi|57501174|gb|CX532455.1|CX532455 s13dNF66A11MJ081_271200 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc TTACCTATTCCACCAATTCCAT EST sequence (targeted fragment marked with yellow): GGCACGAGGGGCTTGGAGTCTCAAATATTAGAAGTGATATCTCTCCTTGGACTTGACTCGAATGAGAAAGTCAACATGGTAGGCATTTATGGAATCGGCGGAATAGGCAAATCAACAACTGCTCGTGCTGTGCATAACTTGATTGCTGATCAGTTTGAAGGTGTGTGTTTTCTCGATGACTTAAGAAAGAGGGAAATTAATCATGATCTTGCACGGCTCCAAGAAGCACTACTTTCTGATATATTGGGGGAGAAGGATATTAAAGTAGGAGATGTTTACAGAGGAATGTCGATAATTAAAAGGAGGCTTCAAAGAAAGAAAGTCCTTTTGATTCTTGATAATGTCGACAAAGGTAAGCAGTTACAGGCATTTGTAGGAGGAGATGATTGGTATGGCTCCGGAAGCAAGATCATAGTCACTACAAGAGACAAGCATTTGTTGGCCAGTAATGGGATTGTGAAAGTATATGAGGTTAAACAGCTAAAAAATGAAAAGGCCCTGGAGTTGTTTAGTTGGCATGCATTTAAAAATAAAAAAAATTATCCAGGTCATCTGGATATCGCAAAACGTGCAGTATCTTATTGTCAGGGTCTTCCCTTGGCTTTGGA | |||||||||
gi|57495680|gb|CX526961.1|CX526961 s13dNF37E04AT035_514434 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence TTACCTATTCCACCAATTCCAT EST sequence (targeted fragment marked with yellow): GGCACGAGGAGGACTTGGTGGTGGTTCCGGTGGTGGATACGGAGGAGGTGGTGGTAGTGGTTTAGGAGGTGGATATGGAGGAGGTGGTGGTAGTGGTTTANGTGGTGGATATGGAGGAGGAGGTTTAGGTGGTGGTTATGGAGGAGGTGGAATATGTAAAGGAATTGTTGGTGGAATTGGAG | |||||||||
gi|14983784|gb|BI309457.1|BI309457 EST530867 GPOD Medicago truncatula cDNA clone pGPOD-11H6 5' end, mRNA sequence TTACCTATTCCACCAATTCCAT EST sequence (targeted fragment marked with yellow): TTTAACTTATTCAGATGGCTAGCACCAGCAACTCATCTTCAGTTCTTGGGACTTCATCAAGAAGAAATTATTATGATGTATTTGTCACCTTCAGAGGTGAAGATACTCGGAACAATTTCACAGATTTTCTTTTTGATGCCCTTCAAACAAAAGGCATTATTGTATTTTCGGATGACACTAATCTTCCAAAAGGTGAATCCATTGGACCCGAGCTCCTTCGAGCAATCGAAGGATCTCAAGTTTTTGTTGCGGTCTTTTCAATAAACTATGCTTCCTCAACATGGTGTTTACAAGAATTAGAAAAGATATGTGAATGCGTTAAGGGATCAGGAAAACATGTTCTTCCAGTTTTCTATGATGTTGATCCCTCTGATGTGAGAAAGCAAAGTGGGATTTATGGTGAAGCCTTTATCAAACATGAACAAAGATTCCAACAAGAATTTCAGAAGGTGTCAAAATGGAGGGACGCTCTAAAACAAGTGGGGAGTATCTCTGGTTGGGATCTACGTGATAAGCCGCAAGCTGGAGAGATTAAAAAGATTGTTCAAACGATCTTGAATATATTGAAGTACAAATCTTCATGTTTTTCAAAAGATTTAGTTGGGATAGATTCTCGTTTAGACGGATTACAAAATCATTTACTTTTGGACTCGGTTGACAGTGTTCGTGCTATAGGAATTTGTGGAATGGGAGGAATAGGGAAGACAACCCTTGCTATGGCTTTATATGATCAAATATCTCATCGATTTAGTGCATCCTGGTTTATAGATGATGTAAAGCAAAATTATTAATTACATGATGGTCCC | |||||||||
gi|13782021|gb|BG646909.1|BG646909 EST508528 HOGA Medicago truncatula cDNA clone pHOGA-15K19 5' end, mRNA sequence TTACCTATTCCACCAATTCCAT EST sequence (targeted fragment marked with yellow): TATTATGATGTGTTTGTCACCTTTAGAGGTGAAGATACTCGCAACAATTTCACTGATTTTCTTTTTGATGCCCTTGAAACAAAAGGCATTATGGTATTTCGGGATGTCATTAATCTTCAAAAAGGTGAATGCATAGGACCTGAGCTTTTTCGTGCAATCGAAATATCTCAGGTTTACGTTGCGATCTTCTCAAAGAACTATGCTTCCTCAACGTGGTGCTTGCAAGAATTAGAAAAGATATGTGAATGCATTAAGGGGTCGGGAAAACATGTTCTTCCTGTTTTCTATGATGTTGATCCTTCTGAGGTGCGGAAGCAAAGTGGAATTTATAGTGAAGCTTTTGTCAAACATGAACAAAGATTCCAACAAGACTCTATGAAGGTGTCAAGATGGAGAGAAGCTCTAGAGCAAGTGGGGAGTATATCTGGTTGGGATCTACGTGATGAGCCACTAGCTAGAGAAATTAAAGAGATTGTTCAAAAGATAATCAATATATTGGAATGCAAATATTCATGTGTTTCAAAAGATTTAGTTGGGATTGATTCTCCTATACAAGCATTACAAAATCATTTGCTTTTGAACTCAGTTGATGGTGTTCGTGCTATAGGAATTTGTGGAATGGGAGGAATAGGGAAAACAACCCTTGCTACGACTTTATATGGCCAAATATCTCATCAATTTAGTGCATCTTGTTTTATTGACGATGTAACCCAAATTTATGGATTACATGATGATCCACTCGATGTAC | |||||||||
gi|9675158|gb|AL375406.1|AL375406 MtBB14D09F1 MtBB Medicago truncatula cDNA clone MtBB14D09 T3, mRNA sequence TTACCTATTCCACCAATTCCAT EST sequence (targeted fragment marked with yellow): TGTGAGGAAAAAAGAATGTTATCTTGTCTTACACATGTGCTTTTTGTTTAGGTTTACTTATGTGATGATGGTTTGACATTACCAATAATCTTTTTCAAAATTCCATACACCAATATATAGTGATTGAAAAGATTGTTGAAGAGATAATAAATAGATTGGGTTACCGGTTTTCAAGTCTTCCAAAAGATTTAGTTGGGATTGATTCTCTTATAGAAGAATTAGAAAAAGTGTTTACTTTTGGAATCAACTGATATTATACAGGTTGTAGGAATTTATGGAATGGGAGGAATAGGAAAGACGACTCTAGCTACTGCTCTTTATGACAGAATCTCTCATCAATTTGATGCATGCTGCTTCATCGATGATATAAGCAAAGTTTATAGAAATGAAGGTCGATTGGTGCTCAAAAGCAAGCACTACATCAAACTCTTAGCAAACAGCACCTTCAGATATGCAATCTTTACAACAAAAACTAA | |||||||||
gi|57502588|gb|CX533869.1|CX533869 s13dNF0QH09MJ076_321016 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc TTACCTATTCCACCAATTCCAT EST sequence (targeted fragment marked with yellow): GGCACGAGGAAAGATTCCAACATGAATCAGAGATGGTACAAAGATGGAGGGCAAGTCTAACACAAGTCGCCAATCTCTCTGGTTGGGATATGCATCATAAGCCTCAATATGCAGAGATTGAAAAGATTGTTGAAGAGATAACGAATATATCGGGTCACAAATTTTCATGTCTTCCAAAAGAATTAGTTGGAATAAATTATCCTATAGAAAAAGTAGCAAATCTATTACTTTTGGACTCCGTTGATGATGTTCGGGTTGTAGGAATTTGTGGGATGGGTGGAATAGGGAAGACAACTCTTACTACTGCTTTATGTGGTAGAATCTCTCATCGATTTGATGTACGTTGTTTTATTGATGATCTAAGCAGAATATATAGACATGATGGTCCAATTGGTGCACAAAAGCAAATCCTACACCAAACTCTTGGCGGGGAACACTTTCAAATATACAATCTATATGACACAACTAATTTGATACAAAGTAGGCTACGCCGCCTACGAGCACTTATAATAGTTGATAATGTTGATAAAGTTGAACAACTTGATAAATTAGCTGTGAATCGTGAATGCTTAGGTGCAGGGAGTAGAATCGTTATAATTTCTAGAGATGAACATATCTTGAAAGAGTATGGAGTTGATGTAGTTTACAAGTTCCACTCTTGAATGGGACT | |||||||||
gi|14866334|gb|BI264259.1|BI264259 NF110C09PL1F1070 Phosphate starved leaf Medicago truncatula cDNA clone NF110C09PL 5', mRNA se TTACCTATTCCACCAATTCCAT EST sequence (targeted fragment marked with yellow): GCACCAGGCCGTCTAAACGCTAATAGCGGTAAAGAGAATGATAAGAAACTAAACAAAGTTCCTTTTATTAAAACATCTATGGTAATTATATTTCTTAATTCATTTTTCAAAATCTCAAACAACAAACAAAGCATAGCACAATTTGAGCGATTTTGCCCCGTTTTCCTCCTTTGTAATTTGGTAGTCTCCTTCCTCAGTTTCATCCAAATATATATTATTGTGACATCATTTATTAACTTAACACTCAATTAATGATTTTCCTTTAAAATTTAAAAATAAAACTCAAAAAAAATGTCAAAATGTAAACTCCTAAAAAAATGGAGACGGCAATTGTACGGTCGCTGTAGATAGAGGATGAAAAACACAATTAATCCTAATATATGCACTTGAATGACCTCTTTTCTCATATTGGACAGGGATATGCCTGAGCATAAGTTTATTGGGGAGATTGTTGAAAAAGTTTTAGGAAATATAGAACCTGTTGCATTGCCTGTTGGTGATTACAAAGTTGGATTGGAGCACCAAAAGCAACATGTGATTTCCCTTTTGAATGTTGGGTCGGATGATAAAGCATGTATGGTAGGGATCTACGGGATTGGTGGAATAGGGAAAACAACTCTTGCTATTTCTGNTTATAATTTGATTGCCAATGAATTTGAGGGTTCATGTTTTGTTGAAANG | |||||||||
gi|89244955|gb|DY616742.1|DY616742 AC2322 NOLLY Medicago truncatula cDNA 5', mRNA sequence TTACCTATTCCACCAATTCCAT EST sequence (targeted fragment marked with yellow): GCTTCTTCTATATTTTGTTTGGACGAACTTGTCCACATCATTCATTGCTTCGACCAAGAGAAGGGTCGCAAAATTTTACCTATTTTCTATGATGTGGAACCTTCCCACGTGCGACATCAGACTGGGAGTTATGGCAAAGCCATATCTAGGCATGAAAAGAGGTTCCAAAATAACAAAGAAAAATACAACTACAACATGAAGAGGTTGCATAAATGGAAGATGGCTCTTAACCAAGCAGCTAACTTGTCCGGCCACCATTTTAATCCTAGGAATGAATATCAATACAAGTTTATAGGGGATATAGTCAAAAATGTATCCAACAAGATAAATCGTGCTCCTTTACATGTTGTCGATTACCCGGTTGGCATGCAGTCTCGAGTCCTTAAAGTAAATTCACTTCTAGAAGTTGCATCTAATTATGAAGTCAAGATGATAGGTATCTATGGACTTGGAGGAATGGGTAAGACAACTCTTGCAAGAGCAGTTTATAATTTCGTTGCTGATCAATTTGAATGTGTATGTTTTCTTCACAATGTGAGAGAAAATTCAGCAAAACATGGTCTAGAGCATCTCCAAAAGGATTTTCTTTCAAAACTGTTGGATTGGACATTAAGTTAGGAGATAGTAGTGAGGGAATTCCAATCATAAAGCAAAGGCTCACCGGGAAAAAGGTCTATTGGTCTTGATGATGTTACCGAATGGAGCAGTGCAAGTCTTAACTGGGGCTTGATGGGTTAAGTGGTAGTAGGGATCATTCCACTCGAACAACCCTTGTTCAGTCTGGGATGGACTACTTGAATAGATGGGTAATAGGAAACCCTTGATTGCTAGGGAGGTTTTAAGTAACAGTTATTCAGTTGCCGTTTAACCGCCAAAAATTGCTTTGGCCTCCTG | |||||||||
gi|11935465|gb|AW696680.2|AW696680 NF109F07ST1F1062 Developing stem Medicago truncatula cDNA clone NF109F07ST 5', mRNA sequence TTACCTATTCCACCAATTCCAT EST sequence (targeted fragment marked with yellow): CAATTATTCATCTCTTCCAAAAGAACTAGTTGGTATGAATTCTCATATAGATAAAGTAGCAAATCTATTACTTTTGGACTCCATTGATGATGTTCGGGTTGTAGGAATTTGTGGGATGGGTGGAATAGGGAAGACAACTCTGGCTACTGCTTTATATGGTCAAATCTCTCATCAATTTGATGCACGTTGTTTTATTGATGATCTAAGCAAAATATATAGACATGATGGTCAAGTTGGTGCACAAAAGCAAATCCTACACCAGACTCTTGGCGTGGAACCCTTTCAGCTTTGCAATCTATATCACACAACTGATTTGATGCGAAGGAGGCTACGTCGCCTACGAGTACTTATAATTGTTGATAATGTTGATAAAGTTGGACAACTTGATAAATTGGGTGTGAATCGTGAATGGTTAGGTGCAGGGAGTAGAATCATTATAATTTCTGGAGATGAACATATCTTGAAAGAGTATGGAGTTGATGTAGTTTACAGAGTTCCACTCTTGAATTGGACCAACTCTCTTCAATTATTTTCTCTAAAAGCTTTCAAACTTTATCATATTATCAGTGATTATGAGGAGTTTGACATATGACATATTAAATTATGCTAATGGCTTACCACTAGCCGATTACAGTGTTGGG | |||||||||