| mature miRNA: TTCCACAGCTTTCTTGAACTG species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|57503102|gb|CX534383.1|CX534383 s13dNF0RB04MJ041_322522 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GGCACGAGGCAAAGTAAGATTGAAAAACAGAATGGAGAGCAGCGCCGCACTAACTAGCATTCGACTCACTTCCTCGATCCGTCCTTCCCGTTTTTCTTCCCCTTTTCTTTCCCCCGCATTTCCTCCCAAACCCACTTCTCTATCCCTCAAGCTCCAAAAGCAGTTTCCTTTCACTTCCCAGAATGTTCTCCAAGCTTCTAATGCTCTCAGACCTTCTGCTTCTGTTTCTGCTAGTGAGGCGATTGAGTTGGCAGACATAGATTGGGACAACCTAGGATTTGGTCTTCAGCCTACTGATTATATGTATTTCATGAAATGTGATCAAGGTGGAACCTTTTCTAAGGGTGAATTAAAGCGTTTTGGGAACATTGAATTGAACCCTTCTGCTGGTGTTTTAAACTATGGACAGGGATTATTTGAGGGTTTGAAAGCTTACCGTAAAGATGATGGGAACATACTCCTCTTTCGTCCGGAAGAAAACGCTTTACGGATGAAGACGGGTGCAGAGCGAATGTGCATGCCATCACCTAGTGTAGAACAGTTCGTGGAAGCTGTGAAAGATACTGTTTTAGCAAACAAACGTTGGATCCCCCCTCAGGGTAAAGGTTCATTGTATATTAGACCTTTGCTAATGGGAAGTGGAGCTGTACTTGGGCTTGCACCTGCTCCAGAGTACACCTTTCTAATATATGT | |||||||||
gi|151386053|gb|EV255931.1|EV255931 MTYCQ55TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): AGTCCAATGTTGCTATCAAAGAGCACTTTGGAAAATTCGCTGATGTTTTGGAACCTGGATGTCATTGTCTGCCTTGGTGTCTTGGTTACCAGATTGCTGGTGGATTATCGCTTCGTGTTCAGCAACTTGATGTTAAATGCGAGACGAAAACTAAGGATAATGTCTTTGTGAATGTGGTTGCATCTGTACAATATCGTGCTGTGGCTGACAAAGCGTCTGATGCCTTTTATCGGCTCACCAACACAAGGGAACAGACCCAATCATATGTTTTTGATGTTATAAGGGCCAGTGTGCCGAAGTTGGAATTGGATGCTGTCTTTGAGCAGAAGAATGATATTGCAAAGGCTGTTGAAGAGGAGCTTGAGAAGGCGATGTCAATGTACGGATATCAGATAGTCCAGACTCTCATTGTTGATATTGAGCCTGATGTTAATGTCAAGAGAGCAATGAACGAGATCAATGCAGCTGCAAGAATGAGGTTGGCTGCGAACGAGAGGCTGAAGCAGAAAGATATTGCAGATCAAGAAAGCTGAGGAGAAGCTGAGTCCAAA | |||||||||
gi|57496945|gb|CX528226.1|CX528226 s13dNF53B04AT041_516964 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GGCACGAGGCACAACTCTCACATTTCTCTTCTTTGTCTTGTTCTTGTTTTGTGCGTAATTTTCACATTCATTCATCGCTCTCTTCCTCAAAACCTCTTTCTCTTTCAAATTAGGGTTTCAAATTCTTCCATTTCCTCCAAATTCAATATCCAATTCGATTTCCTCACCCCTTCAATCCCCACTCTCCAATCGATTAATTCCATCTGCACCGATTTCAGCTTGATTGGTGTTTACGAGTGTTGAAATCGACGATGAAAGAGTGTTCAGTAGTTTCTGGGAGCTACTATGAAGATTAAAGTTTGAACCTTTTTGCTATGATATTTAGTTTTTGATTGATTTGGGATTTTGGGATTTTTTGATTTTGATTTTTGAGGGGAGTGGATTTGATTAGAGAAAAAGGGTTATGGAGAATGGTTACGATGGGAAATTGGCTGACAAATTTTCAGGATTGGGTATTAACAATCAGAACGGTCAACAACAACAAACACAACAACATGTGCATGATGATCATCAACCTGATAACAACAACACCAATAATGATAACTTGTTTCAGGTTATGAAAGCTGTTGAAGCTGCTGAAGCCACCATTAAGCAACAGGTA | |||||||||
gi|57489770|gb|CX521186.1|CX521186 s13dNF66H07VI062_450158 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CTCAGAGGGAGGATATCATATGTATCATCAAATGGAAGACTGGCTAGGAAGACCGTTTCGAAGCGTTCCACGGCAGGTTGTGCCACCACTTAAAATATCACTTTCAAGGAAGTTGAAGGAAGTTGTGGAGGAGAAATACACAAAAGCAGGTGTAAAGAAAGGAAGATATATTGTGATTCATGGGATACAATCAGACTCAAAAGCCACAATGCAGTCTAGGGGTGATCCTGATAGCTTGCTACCCCTTGAAGTGTGGGCTGAAATTGCTGATGCTGTAAGGGAATTTACACCACTTTTTGTCATTCCACATGAGAAAGAAAGGGAAAATGTTGAGGAAATAGTTGGAGAAGATTCCTCTATAATCTTCATCACCACCCCTGGACAGTTGGCTGCTCTTATTAACGACTCGGCTGGAGTTATAGCTACCAATACAGCTGCAATTCAGCTCGCAAATGCGCGCGAAAAACCTAGTGTTGCACTATTTTCCTCTAAAGAGAAGGGAAACAAGTTTGTTCCGCGGGCA | |||||||||
gi|260523486|gb|GT140315.1|GT140315 METCV28TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GGACACCAAAAACTTCCAACTAGTTCATCAAAGCCTAACCACCCTTTCTCTCCTTAGCCAAACTCCAACCATGGCATCAATCACCATAACCTCATTGCTCTTCTTTTCCTTGATCACTTTGTCATTGGCAATGGACACGTCCATGCGTAGCAATGAGGAGGTCATGACCATGTACGAGGAATGGTTGGTAAAACACCATAAGGTGTATAATGGTTTAGGAGAGAAAGATCAAAGGTTTGAAATTTTTAAGGATAATTTAGGATTCATCGATGAGCACAATGCTCAAAATTACACATACAAAGTAGGGTTGAACAAGTTTGCCGATACGACCAACGAGGAATATCGCAACATGTATTTGGGTACGAAGAATGATGCCAAACGTAACGTTATGAAAATCAAGATCACTACCGGTCACCGGTATGCTTTTAATTCCGGTGATCGGTTGCCGGTGCATGTTGATTGGAGGTCGAAAGGTGCAGTTGCTCATATCAAAGATCAAGGAAGTTGTGGAAGTTGTTGGGCGTTCTCAACAATAGCCACAGTGGAAGCTATAAACAAGATAGTCACAGGGAAGCTTGTGTCTTTGTCAGAACAAGAGCTTGTTGATTGTGACAGAGCTTTCAATGAAGGCTGCAATGGTGGTCTCATGGACTATGCCTTTGAATTCATCGTTGAAAATGGTGGCATAGACACTGAACAAGACTATCCATATAAGGATTGGGG | |||||||||
gi|157978815|gb|EX527087.1|EX527087 MTGland-A073_2007-08-21/MTGland-73_J06_012_1 Medicago truncatula A17 glandular trichome Medi TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): TCCCCCTGCATAGTCCAATAAACCTGTGGAATTTTAAAACCNGCAGAAAGAACAACNTTACCNGATTTAATCNCNAGAACNTAGGTCAAATTATTTGAACTAGGTTCNCTAGTAATCTTCATTCCTTCCTTAAAAACCTGTTGAGGCATCAAAGTATCAGTAGGAAAATCAAAACTTTGCCGAATTACCGTACTATTATCCTTCCCAAGCAAAACCAAATTCCCACTATCTTCCAACACCATTAAAGAAGCCCNTTTATTGGTTGTATTGGTAGACCAAATCAAAATTCCATCTTTTTGTAAAAAAGCATTACCCTTTTTATCAAAGACAAAATTATCAGAATTAGAAACTGGTTTTCCTCTATTAGCAGTCCAAATCACAGTGGAGCTAGCTAAATGAACAATAACTAATAGAAACTTGGTGGTGTCGTTCGCAGTGGTGACGAAACCTAAAGCGAAATTTTGGGTTTTGGAGAGAAGAAATTTTCCTTCTCTGTCAATCCAATCCATTTGTGAACCATCCGTACCAGGTGAGATTGAACCAATATATTGAAGACCACATAAACATGGTTTTGACATGAAGAAGAAAATAAAGATGAACATAGAAAGAATAATAACNTGTTTTGTTATAATCNTGTTTGGTTTGGAAGTGTTTTGTAAAAAATGAAATTGGGTTGAGAATGATAATAAACNAGAGTGATAGCTGGAGGATGAGTATGGAAATGAATGAAGTAGATG | |||||||||
gi|57494861|gb|CX526142.1|CX526142 s13dNF28F09AT079_510028 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GGCACGAGGCAACTCTCACATTTCTCTTCTTTGTCTTGTTCTTGTTTTGTGCGTAATTTTCACATTCATTCATCGCTCTCTTCCTCAAAACCTCTTTCTCTTTCAAATTAGGGTTTCAAATTCTTCCATTTCCTCCAAATTCAATATCCAATTCGATTTCCTCACCCCTTCAATCCCCACTCTCCAATCGATTAATTCCATCTGCACCGATTTCAGCTTGATTGGTGTTTACGAGTGTTGAAATCGACGATGAAAGAGTGTTCAGTAGTTTCTGGGAGCTACTATGAAGATTAAAGTTTGAACCTTTTTGCTATGATATTTAGTTTTTGATTGATTTGGGATTTTGGGATTTTTTGATTTTGATTTTTGAGGGGAGTGGATTTGATTAGAGAAAAAGGGTTATGGAGAATGGTTACGATGGGAAATTGGCTGACAAATTTTCAGGATTGGGTATTAACAATCAGAACGGTCAACAACAACAAACACAACAACATGTGCATGATGATCATCAACCTGATAACAACAACACCAATAATGATAACTTGTTTCAGGTTATGAAAGCTGTTGAAGCTGCTGAAGCCACCATTAAGCAACAGGTAGA | |||||||||
gi|57566735|gb|CX539710.1|CX539710 s13dNF67C04GS022_462690 Germinating Seed Medicago truncatula cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GCCTCGTGCCGAATTCGGCACGAGGATCAAATTGTGGTGATGTTAGTCCGAATGTACTTGGAGCCTTTTGTACAGACACTGGATTACCTTGTGACTTCAATCACAGTACATGTGGGGGGAAGAATGAGTTATGCTATGGCCGGGGACCTGGTTACCCAGATGAATTTGAAAGTACACGTATTATAGGGGAGAGACAGTTTAAAAAAGCAGTGGAGCTATTCAATGGAGCATCTGAACAGATTAAAGGAAAGGTGGATTTTCGACATGCCTACCTAGATTTTTCCAAGCTCGAGGTAAATGTTTCTAGCAATGGAGCTTCAAAGGTAGTAAAGACATGCCCTGCTGCAATGGGATTTGGATTTGCTGCTGGGACAACTGATGGACCCGGAGCATTTGATTTTAAGCAAGGTGATGATCAGGGGAACCCTTTCTGGAAACTGGTCCGTAATTTACTGAAAACGCCTGACAAGGAACAAATAGCCTGTCAGCAGCCAAAGCCTATTTTGCTTGATACTGGTGAAATGAAGCTTCCATATGATTGGGCTCCTACTATACTTCCAATCCAAATCCTTCGAATTGGGCA | |||||||||
gi|11904254|gb|BF640096.1|BF640096 NF015G08IN1F1068 Insect herbivory Medicago truncatula cDNA clone NF015G08IN 5', mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CTAGCATCGTGTTTATCTCTGAAAATCCAGAAATGGCAGCAACATTGCAAACTCCGCTCTATGCAGCTATCTCCTCTTCTCCTGCATCATCATCATCATCATCATCTTCCATTCGAACAACAACATCATTCTCCTTCTTCCGTTCTACACCGCCACCAACTCTCCTCTTCAACTCCAAAAACTCCTTCTCTTTAATTCGCGCTTCCTCCACTGACACTGTTATCACTGAATTGGATGCTGTTTCCGCTTTCAGTGAGATCGTTCCAGATACCGTTATTTTCGATGATTTCCAAAAGTTTCCTCCAACTGCTGCTACTGTTAGTTCATCACTGATTTTGGGGATATGTGGTCTTCCGGATACTATTTTTAAGAAAGCTGTGGAAATGGCTTTGGCTGATTCTGAATGTTATGGACTTCAAGATCCTAATGCAAGATTATCTTGTTTCCGCCACCAAGGCTTTATGAATGTTTGGTA | |||||||||
gi|13367272|gb|BG448491.1|BG448491 NF036A10RT1F1070 Developing root Medicago truncatula cDNA clone NF036A10RT 5', mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CATAATGTTACTGGATCTAAATTCGAAACCATTTGTGATGTGGCAAGTATTACACTTAACAAAAATTCCATTCATGGTGATACNTTCTGCATTAACACCCGGTGGTGTCCGTTTGGGTACTCCAGCGTTAACATCTCGTGGATTTGTTGAAAGTGATTTTGAAACAGTTGCTGAATTTTTGGATCGTACCTTAAAATTAGCCATTGTCATTCAACAAACTCATAAAACTTTGGCAGAATTTAAAAAAGCTGTGGAAGATCATGCAGATGTTAAGGCTCTTCGTCGTGATGTGGAAGCTTTTGCCACTAAATTCTATATGCCTGGTATTGATGTTTCTAAATTAAAATATCAATCCTAATCAACAAACCATGATATACAACATTGTACCCCTGTAGTGTGTTTGTGTGATGATGTTTCCGTTGGATGTGTTGATGATCATTGNTTTTGTTCTGNNGGTTNGGTTNGGC | |||||||||
gi|11909207|gb|BF644078.1|BF644078 NF058E07EC1F1055 Elicited cell culture Medicago truncatula cDNA clone NF058E07EC 5', mRNA seq TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CAACTATATATAAATAATCCAAACACCACAAAGATCTTAATCATCTAACAATGCAATGAGTCAATACATGGATAAGGACAGTGTGGTTTTGTTGGATTTTTGGCCAAGCGTATATGGAATGAGAGTGAAAATTGCTTTGGAAGAGAAGGGAGTCTCATATGAATGTAGACAAGAAGATTTTCAAGATAAAAGCTCTATGCTTTTAGAGATGAACCCGGTTTACAAAATGATACCGGTTTTGGTTCATAATGGAAAACCTATATGTGAATCACTTAATATAGTTGAATACATTGATGAAGCTTGGAATCACAAACCTTCTCTTTTGCCCTTAGACCCTTACAAGCGATCACAAGCTAAGTTTTGGGGAGATTACATTGACAAACATGTATACAGCATTCCAAGGAAGCTATGGAAAGGA | |||||||||
gi|10521058|gb|BE943299.1|BE943299 EST422878 MGHG Medicago truncatula cDNA clone pMGHG-15I8, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GGATCAAGGAAGTTGTGGAAGTTGTTGGGCGTTCTCAACAATAGCCACAGTGGAAGCTATAAACAAGATAGTCACAGGGAAGCTTGTGTCTTTGTCAGAACAAGAGCTTGTTGATTGTGACAGAGCTTTCAATGAAGGCTGCAATGGTGGTCTCATGGACTATGCCTTTGAATTCATCGTTGAAAATGGTGGCATAGACACTGAACAAGACTATCCATATAAGGGATTTGAGGGTAGATGTGATCCAACAAGGAAAAATGCCAAGGTAGTGAGCATTGATGGATATGAAGATGTTCCAGCTTATAATGAAAATGCATTAAAGAAAGCTGTTTCTCATCAACCTGTGAGCGTTGCTATTGAGGCCGGTGGCCGGGCTTTGCAACTCTATCAATCGGGTGTATTTACTGGTAGATGTGGAACAAACTTGGATCATGGTGTGGTTGTTGTTGGATATGGTTCTGAAAATGGTGTTGATTATTGGTTGGTTAGGAATTCATGGGGTACAAATTGGGGTGAAGATGGTTACTTCAAGTTGGAACG | |||||||||
gi|161108560|gb|EY477304.1|EY477304 METB155TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GCAGATGCTGAGAAGGAGTTTGAAGTTTGCTCAAGTCTGTTTGCTTCAGCTTCAGAGAAAGAGTACGAGCAGATTCAGAAAGATGTGGAAGCTTTTTGAAAAGGAATTCGGATAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGAAGAACTAAATGGGAAGTGAATAACCAAATTACTGAGCTGAATTCTGATGCCAAAAAAACTGCAGTACAACAACTTGAAGAAGAAATCAGAGTTTGCAAAAACATGATCAAGTGTACTGTCTGTTCTGACC | |||||||||
gi|57493053|gb|CX524334.1|CX524334 s13dNF14E11AT085_448012 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GCACGAGGCTCTCACATTTCTCTTCTTTGTCTTGTTCTTGTTTTGTGCGTAATTTTCACATTCATTCATCGCTCTCTTCCTCAAAACCTCTTTCTCTTTCAAATTAGGGTTTCAAATTCTTCCATTTCCTCCAAATTCAATATCCAATTCGATTTCCTCACCCCTTCAATCCCCACTCTCCAATCGATTAATTCCATCTGCACCGATTTCAGCTTGATTGGTGTTTACGAGTGTTGAAATCGACGATGAAAGAGTGTTCAGTAGTTTATGGGAGCTACTATGAAGATTAAAGTTTGAACCTTTTTGCTATGATATTTAGTTTTTGATTGATTTGGGATTTTGGGATTTTTTGATTTTGATTTTTGAGGGGAGTGGATTTGATTAGAGAAAAAGGGTTATGGAGAATGGTTACGATGGGAAATTGGCTGACAAATTTTCAGGATTGGGTATTAACAATCAGAACGGTAAACAACAACAAACACAACAACATGTGCATGATGATCATCAACCTGATAACAACAACACCAATAATGATAACTTGTTTCAGGTTATGAAAGCTGTTGAAGCTGCTGAAGCCACCATTAAGCAACAG | |||||||||
gi|83666534|gb|DW016942.1|DW016942 EST1225903 MTY Medicago truncatula cDNA clone MTYAN54, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CGGCCGGGGAAGCATATGAAGATATGCAGACACAGCACCAACGTCTATTGCAGCAAGTGGCTGAGAGGGATGACTGTAATATCAAGCTTGTATCAGAAAGCATGAAGGCAAAACATTTACATAGCACTTTATTGTCTGAAAAGCAAGCCTTCGTTGATCAACTTCAAAAGATTAATTCTTTGATAGAAAATTCAAAGAAGAGGATTGCAAATAGTGAAGAACAGATCAAACACATTCTATCAGAAGCTGCTAAATGTACTCACGATGAAAAACACCTCGCAGCCGCCTTAGAGTTTGCCAGGTGGGAATTGGCAGGTGCTGAGAAGGAGTTGAAGTTGCTCAAGTCTGTTGCTTCAGCTTCAGAGAAAGAGTACGAGCAGATTCAGAAAGATGTGGAAGCTTTTGAAAAGGAATTGGATAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGAAGAACTAATGGAAGTGAATAACCAAATTACTGAGCTGAATTCTGATGCCAAAAAAACTGCAGTACAACAACTTGAAGAAGAAATCAGAGTTTGCAAAAACATGATCAAGTGTACTGTCTGTTCTGACCGTCCAAAGGAGGTTGTGATTGTGAAGTGCTATCATTTGTTCTGCAATCCATGCATACAAAGAAATCTTGAACTCCGTCACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGACAGAGTGATGTTCGCTTTGTTAAAATATGAGACTGATAACTCATGTCATGATAACCTTGTGCTGTTAATGTATTGGATCCTTTTTCATGGGTGTTTGTTTGTCCTTGATAGTACTTTGTA | |||||||||
gi|57566462|gb|CX539437.1|CX539437 s13dNF70H11GS092_462134 Germinating Seed Medicago truncatula cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GCGAAAGGTGCAGTTGCTCATATCAAAGATCAAGGAAGTTGTGGAAGTTGTTGGGCGTTCTCAACAATAGCCACAGTGGAAGCTATAAACAAGATAGTCACAGGGAAGCTTGTGTCTTTGTCAGAACAAGAGCTTGTTGATTGTGACAGAGCTTTGAATGAAGGCTGCAATGGTGGTCTCATGGACTATGCCTTTGAATTCATCGTTGAAAATGGTGGCATAGACACTGAACAAGACTATCCATATAAGGGATTTGAGGGTAGATGTGATCCAACAAGGAAAAATGCCAAGGTAGTGAGCATTGATGGATATGAAGATGTTCCAGCTTATAATGAAAATGCATTAAAGAAAGCTGTTTCTCATCAACCTGTGAGCGTTGCTATTGAGGCCGGTGGCCGGGCTTTGCAACTCTATCAATCGGGTGTATTTACTGGTAGATGTGGAACAAACTTGGATCATGGTGTGGTTGTTGTTGGATATGGTTCTGAAAATG | |||||||||