| mature miRNA: TTGACAGAAGATAGAGAGCAC species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|9674643|gb|AL374891.1|AL374891 MtBB09H10R1 MtBB Medicago truncatula cDNA clone MtBB09H10 T7, mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CCAAAAATGTCTGATTGGGCACCAGTGGTTATTGGACTTGTGCTGTTTGTGTTTCTTCAACCAGGGTTGTTGTTTTCATTTCCAGGAAATGGAAAACAGCTTGAGTTTGCTGGTACTGAAGACACATGGAAAAGCTATTTTCATTCATACACTTATTTTCTTTGGTCTTTATGCCGTTATCATCTTGGCTCTTCGCGTTCATATCTATACTGCTTGATATGGTTACACCTGGATCTGAGGTAGAAACTCCATTATTGTAAGTTGTAATAATTGGATGTCTCTCTTTCTTCTGTTAATGATTTTGTTGTTGTTGTTGTTAGAAGTTACCTATGAATTGAAATAAAGTTAAGGTTTTTTATTTTGCTGATTGGAAATACATAGATCTTTTTTTTTGGCAATACATAGATCTGATCTGATATGTTATGGGTTTGTGTTATTTTTAATTGTTGTTGATTAATTAATTAATTTTAGTGTAATTTTTTGGATTTGAAGTGACTCTATTTGAAGCTAGCATGATAAAAAAAAAAAAAAAACTGAGGGGC | |||||||||
gi|11930893|gb|AW686119.2|AW686119 NF033G12NR1F1000 Nodulated root Medicago truncatula cDNA clone NF033G12NR 5', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): ATTTAGCGAGAAATTGGTGGAGTGCCTCCATTTGTACTACTTATCTTCTGTCAACTAATTAACAACATGATTTATGTTTTCAACTGTTGCTAGGATTAATTTGGCGATCTGAACTTAGGGAGAAATTGGCGGAGATGAGTGTCTCTGTCCTTTTGTTTGTACTACTTATCTTGTTTCTATGATCAACGTAGTTTTCATTGATATTTGTAATTTATGAAGATGTCATCTTCATTACAGTGGCCCAAGGACTCCTGTATTTGAGTTTTATGTGTGTGATACGGAGGAGAAACCTATAAATGTGGCAGGAAGCGAGGTTCCATTCAGCCTTGGGATAAAAATGGTAATTTTCTAGCGGTGTCCTCTTATGGTTTCTTGCAAGTGTCAAGTTTTTGTTGATCTGTATCAGGAGTGAGTATGAAGCATATAAGAATTCTGGACTGGTTTGACACTTTACTTTGTTGATTTGTCCCTTCCTCCTGCTATAAATCCTTTTCTATTTTAACACACAACTTTGCACTTTACTGTTTATACAA | |||||||||
gi|209566340|gb|GE347410.1|GE347410 MEUB696TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GTTGGCAAGAAATTCTCCCTAAATCTGGCGATGTTAACAAAGCAGCGCCTGGAACTCCTATCAGCCATCCTATCCGCGGTGCCGTTGGTTCATCCGCAGGTGAAAAAGGCGGTAGGAAGCTCTCTTCTGATGGCAAGCCCGGATCTTTTGACTCGGGTTGTGCTCTCTATCTTCTGTCAACACTTCAAACACAAAGCTCAGAGTTGAGTTTGATGCAGTCAAGCATCAACAGTCCAACACAATCTTCGTCTGGAACGTTGCATTTTGATGCTACAAAGGAGTACTCTTACTCCGGAAAGGTGAAGGATAAGCCGAATGGTCCGGTATTTGTTCTAGATGGAAACACAACAAACCTTCATTGCAATGGGATGCTGCAAATGGGTCCTAATGGATTGATCGAAAACGATAACTCAATGACTCTTCCATTCTTCTGGGAGTAACGTGCAGCTGAGTGGTGTCACGGCTTTTTGGTTGTTCTCGTCATTAGTTTATTGTTGCTCCTGACGCTCCCCCAGAGTTTCCAACACCAAGTTGTTTGGTCTTTGTTTGGAAATTTATGAAATTGTTGGTTTTCGAAACATTATGTGTACTCTTTTCCTTATGTATGAGTTGAACTCGATACCTTGGAAATTACAACATTCAAACACATTGCGCATCAACCATTCGCGCTAGACCCCTA | |||||||||
gi|161107900|gb|EY476556.1|EY476556 METAS72TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGAAACCACACATAAAAAAATTGAAAAACTTTGTCTTTGATCCAAACACCAAGTTAGCTGCAGTTTAATACAATAGGGGAAATCACCCCATCTGTTCAGGATTCGCACTGATGTCACCCTCTCTGGGTTGAAAGCTCAAATGGATTAAATCTACATCCAACTCAACTACAGAGACACACAGAGAGTGTATGGTGTTGAGTATCGACGTCTATCGACCGACTCAGTTAGAAGTGTGCGGTTCAGTCGGATGAAGCTCATGAACGACGACGACGTGAGAACCATGTTCTCGATCTTTTGTCAGTATAGTACAAGAGGGACAATCAAGTTGGATGCTTCGTTGGTCAGATCTATTTGATAGATAGCTCTCTATTTGACTGCATGATGAAGAACGTCAGCATGTTGTAGAAACTATATAGATAGATAGATAGATAGATAGATACAAAGAGGTTATAAATCTTTATTTGAATACCAAGAGGTTGCTCTCTATTTGAATACCAAGAGGTTGCCATGAGCTAGATCTTGCTTCCTTGGCATATAAATATCTCAGTTGGCAAGGCAGCAGGATCTAACTCAAAATAATCCTCCTGAAACACCTTGTCTTTCATCGTTGTGTTGCAGATCTAATTCCGAAGAGGTTCTTATAAAATCGATCCAGTTGGTCTCCCGATCAAAATATGTCAGTTGGCAACCTTTTGGATCAAGTTCAAAAACACC | |||||||||
gi|7765311|gb|AW775498.1|AW775498 EST334563 DSIL Medicago truncatula cDNA clone pDSIL-2A7, mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CATGGAGGGGTCCTTGTGTGATTCTGGGACAGTGGAAGTTATTGGACCCATTGCTTCAACAGTAGAGGATGCGATGCTAGTGTATGCGGCAATGTTGGGTGCATCACCTGCAAATAGAATCAGTATGAAACCGTCAACACCTTGTCTGCCAACTCTGTCGTCTGATGATGATACAGATGCTTTGAGATCATTAAGAATAGGGATTTATACACCGTGGTTTAATAATGTCCATTCAACTGAAGTCTCTGATAAATGTGAGGATGCTCTTAATCTGCTGTCAAAGGCACATGGTTGTGAAGTGGTAGAAGTTGTTATACCAGAGATTGTGGAGATGCGAACTGCCCATCTTGTTTCCATTGGCTCTGAATGCTTAAGTTCACTGAATCCTGATATTGAAGACGGGAAAGGTGTAAAATTGTCATATGATACTCGCACAAGTTTGGCACTTTTCCAGTCATTTACCGCAGCAGATTATGTTGCAGCTCAATGTATTAGACGAAGGATTATGCATTACTTCATGGAGATTTTCAAGAAAGTTGATGTCATAGTGACTCCAACAACTGGTATGACAGCTCCCAGAATACCTCCAAGTGCCCTTAAAAGTGGTGAAACAGATATGCCGACTACAGGTTACCTCATGCGGTTCGTTGTTCCAGCAAATCTTTTGGGACTCCCTGCCATTTCTGTCCCGGTGGGTTACGATAAA | |||||||||
gi|83668422|gb|DW018830.1|DW018830 EST1227791 MTY Medicago truncatula cDNA clone MTYBB44, mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CGGCCGGGGCTCCTCCTCATATGAATAGTTTGAGTTTTCTCCACATTAATAACCTTGTTTTGTTTCTAGATCTCTCTGGTCTTTTTCCTCGAAACTATGGAGACAAGAAGGTCAGAGGGAAAAAGAAGTTTGAAGTACAAAGAGGATCATGAGGAAGAAGAAGAAGAGGAAGAGGATACGGATTTTGAAGAGGAAGAGGATGGTAGAAGGAAGAGGGTAGTGACAGATCTCTATAGCAAGAGAAGTTCCAAAAAAGCTGGAAGCTCAAACATTCCACCTTGTTGTCAAGTGGAGAATTGTGATGCTGATCTTAGTGAAGCTAAGCAATATCACCGGAGACATAAGGTTTGTGAGTATCATGCCAAAGCACCTGCCGTACACATTGCAGGGTTGCAGCAAAGGTTTTGTCAGCAATGTAGCAGATTCCATGGACTATCTGAATTTGATGACGCAAAAAGAAGTTGCAGAAGGCGTTTGGCCGGGCATAATGAGAGGCGTCGCAAAAGTGCAATTGACTATCAAGGAGAATGATTTCATGGTTGAAACAAAATCTCAGGTTCAAGCCCTTCGTATGTTGCTGGTCTCTAAGGATAGACCAATGCTCTCTATCTTCTGTCAATCTTTTATCTATGTATGCAATGATTTCTGTTTGCTGCTAGTTACATCTATCTATGTCATGTAATATTTAATTTTCTCACTTAGACTACTTATCATTAAAATCATGCATGAACACATGACATTTGAATTTTGC | |||||||||