| mature miRNA: TTGACCGTTCATAGGAACCCT species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|14881954|gb|BI272539.1|BI272539 NF023D09FL1F1077 Developing flower Medicago truncatula cDNA clone NF023D09FL 5', mRNA sequenc TTGACCGTTCATAGGAACCCT EST sequence (targeted fragment marked with yellow): GTTTCTCTCATTTTCATCCAGTATCGAATAAATTCGGATTATATAATCCGAAAACCGTGTGTAGGACCAAGTCAGTGTTTTTGGCCGGTGGTCTGCACCACATAAAACACGTTTTCAAATGTTTTTACCAGCATTAATGGTGGGTAAAACCCATTTGAAACATATTTTTTGACCCAACATTAAGTGTAGATACAATCTATGCAACCATTCTTCCTATAAATAGCCTCCAAACCTTCACCATTTCTCACCGTCATCTCACACTCTCTCCTCTCTCCTCCTCTTCCTTCTACAACAATGTGTTTTCACCGTTGGCCTTTCATAAAAAGATGGCTATACTTTGGAAATTCAGGGATTGTATGAACGGTCAATGAGGATGGCAACGCACTGCAAAGAAGTGTGGTTTGTCTGGGTGCAAGATTGACCATCAAGATCTCTTTCGCCCTAAAGAGGAAATAAATCTTGCCTCAGCCCCCATCACCATCTATTTATCCTCTCCCATTCCTCCCCAGCTTTATTGTAAATGTATTACTATAATAATAAAATGAAATTTTATGTGTAAAAAAAAAAAAAAAAAA | |||||||||
gi|157979187|gb|EX527459.1|EX527459 MTGland_A029_2007-06-18/MTGlandA029_A10_040_1 Medicago truncatula A17 glandular trichome Med TTGACCGTTCATAGGAACCCT EST sequence (targeted fragment marked with yellow): TTAACAAATTNATGANCCCTGTTTGANGTAAAAAAAAATTGAATTTAGGNTCAAAAAANAAAAANAAGTCATTTATAAATTATTAAAATACACACTTCAATGGGACTTGAACACATCATAATANACTAACCATGTAACTGAAGCATTGTGAACAAATTGGAAATTATTCACTTTCAATGTATATAACCATTATTTTACGACTATTACTTTTCCCACCCTACAGCCTTCTCGCGCGCCCTATGATTTTGACCAAAATACCCTTTGTTCGGATTGTATAATCTGAATCAGATTGTTAGTGATTTCCAGAAACAGAAATCCGGACCAGATGTTATGTAATTTTTTGTGTCTTTCTTTGATGTCAAGGGTCTCTGTTGACCGTTATATGAACCACACACAAGCTGCAATGCATTGCAATTGTAGGGTTCCTATGAACGGTCAACAATGACCATGACACCNTCGACACCCCTAAAAAACTAAAAAAAACATTTGAAGAAAATGTAAAAAAAGNNNNGAAGTGAAGAATGTANGTATTTGTTGAAGATGGAAGCCTATTTATNNNCTAAAACNAGTTCT | |||||||||
gi|209567533|gb|GE350737.1|GE350737 MEUAS74TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence TTGACCGTTCATAGGAACCCT EST sequence (targeted fragment marked with yellow): ATTGGAGTTATTCTGACCACTCTCCTTTGTGCAAGCCCAATCGGGCAAGTCGCGGAAGTGTTAAAAACTCAAGGAGCACAATTGATATTGCCAGTCCTTGCTTTACATGCTGCTGCATTTGCTATTGGTTATTGGATGTCAAGAATATCATTTGGTGAATCCACATCACGCACAATATCTATCGAGTGTGGGATGCAGAGCTCTGCACTTGGATTCTTGCTTGCTCAGAAGCACTTTACCAACCCCCTTGTAGCTGTTCCTTCTGCTGTCAGTGTTGTCTGCATGGCGCTTGGCGGGAGTGCTCTAGCTGTGTATTGGAGGAATAGTCCGATTCCCGCTGATGACAAAGACGACTTCAAGGAGTGAAAACCATGACATATTTTCTATCCACTGCATGCCCTATGAATTATTTTCCGCTCATTGTTTAGAAGACATTAATTTATGCATTAGTTGATAAGAAAGTTTTGTTTTATGAATTCATGTAGCCTTGCAATGTCAGAGTTTCGTAGAATTTAGGATAAGCTTGCAACAATTTAAACCAGTGTGAAGAGTGGCAACAAATAATATGCCCATGTAGCAACAAAAAGGGACAACCTATAGCTACTGAGCTCTTGCCATGGTAGGGTCCAATGAACGGTCGAATCCATTGTGGTTCTATTATAATTATTAGTCTTGTCTTGCATTGTGGTTCAACCACTTCAACTAGTGATATTCAGTTACAACAATTGTGTCAAGAAGACTCTATCAATGTATCAACTAATTCCTTCTTAGTAACTATGAAGTTATATTATATTATTATCTGAAGTTCTCGAAAAAAAAAAAAAAAAAA | |||||||||
gi|157980980|gb|EX529252.1|EX529252 MTGland_A051_2007-07-11/MTGlandA051_H11_041_1 Medicago truncatula A17 glandular trichome Med TTGACCGTTCATAGGAACCCT EST sequence (targeted fragment marked with yellow): ACGGCCGGGCCTCTCCTCTTCTTCCTTCTANNACCATCTTCTCCTCCTCCTTCTACAACCATGGTTTTCCATCACCGACCTTTCATAGAAACAGGCCTCTTTGAAAATTTTCAGGGATTTTATGAATGGTCAATGGGGCTAATGGCCATTGGTTTCTTCTTCCCGCCCTCCTATTTCCTCCTCCCCTGTCTCCCCTCCAACGGTGAAGCCACTGGTATGTCCTATCAGCCGGAGTCACTGGTATAACTTACCCCCGCCCCTCCCTTAGAAATAGTTTTAGGTTCTTATGTAAAAAGCTTCAACATTATTGTAATGAATTATTCAAATATCAATAAAATGAGTTGTTTTTATCTTTTTATTTCTGTTTTATATGTTTATTTGAATTTATATTACGAATTTCAAAGCTTAAAATTGTAAAAGTTTTGGAAAAAGACCATTCCGGAATTTAAAATCCGGATAAATCTGGAAAACATTAACAATTCATTCCGGATAATTGTTGTGTGAAGGCAATTTCATAGTTGTGCCTTATCGTTTTTCTATGTCTGTTTGATATAGATTTTAGGCCAATTTTGTTGTTTGAGTTTTAGTCCATATTTTGTATTTTAAGTTTTAATATGTAGTTTAAATTTAATTTTTCTATTGTAATATCCCAACCGTATCATATCTTACATTTTAAAATATTCTCATATCAGCATANNNNNGTCGTATTATATCTGTATTGTATCATATAGTTGGGCTTCATATTATCTTATCTTATTGATTGAAATTTAATTGACATCCACTTAANTATCCTACATAAATTTTTANGGTCTATATACATTTTACCCAATAAAAAAAATAAANAAATCACTATTCACCACCAAAATTGNNNGGTCGGACATTTACCCCANTNGTGAATAATCANNAAATACTCTATTTGNATTACGTCGANCAAGTTTNNCNTTGATAACNTGTATCGTATCTTTACGATCNAATTTANTATANTACTTACTAGCATATNNTCCCCNAAATTAAANA | |||||||||