| mature miRNA: TTTCTAGAGATGAGCATATAT species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|260525985|gb|GT141295.1|GT141295 METBQ40TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence TTTCTAGAGATGAGCATATAT EST sequence (targeted fragment marked with yellow): CTTCTTCAATTCACATTCACATTCCGCTTCCAAATCCCTCTTCAGATGTCAACTCTCTAGATGCACTCACAAGACGGGCGGCAATGTATCAGGATTACATGAAGCATATCCCAATCCCAAGTAGTCGAGGCTCTCTCATCCCGTTTACTTCATGGATGGGATTAGGTAGATCCATCAAGCAGCTATATGGACAGCCTCTTCATTACCTCACAAATATCCTCCTTAAGCAATGGGACCAATTGAGAATCGGCAGTGAGGACGAATATACGCCCTTGGACGACATAATTCATCCGCGCAAAGCAGAATCCACCATCTGGCTCATGGAAGAAATCCATCGACAAACCTCATCACATTTTCATATTGCTGATCTCTGGAAAAAGGACCCAATGTACCATGGGTTTATTGATTCCATTTTCCCAAAATTGGAGGACACATCTTGAAGCCATTTTGTTTAGAGGCTTTGTACCGTAAGCCTGCAAATCGTTTGTCTTATTTTCCTATTGGTAAAGCGAAATTGAACCAGATCCTTGATCCTTTCATCTTAACTTTATGCTTTAGAGTTTAGACTATTGTTCATTTTAATACACAGACAGCTACTTCAAAGTATTTGTCTCCCAGGATGCTGTTAATGATATTCCAGTCTTGGTCACAATCTGTGTTGTTGTGAATGTTCGTCACTGCAATTGCTAATATCATATCATTCAATATAAATAGAAATCGATACTGCTTTCCCATTTTAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|161106833|gb|EY475449.1|EY475449 METAG48TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence TTTCTAGAGATGAGCATATAT EST sequence (targeted fragment marked with yellow): GTAAGATACCTCTATCATTACCTCGATCAATTGAGTCTTTGAAGAATATTCGATCTCTTCTTTTTACGCTCGTTGATTTGGGTGATATCTCTACTTTGGGAAATTTGCAAAGTCTTGAGACACTTGATTTGAAAGACTGTAAAATTGATGAATTGCCACTTGGAATTGCAGATCTAGAGAAATTTAGATTGTTGAATTTGGAAAGTTGTGAAATTGTAAGGAATAATCCATTTGAAGTGATTGAAAGATGCTCATCTCTGGAAGAGTTGTATTTCACAGGTAGTTTTAATACTTTTTGTCGAGAAATAACTTTCCCAAAATTGCAAAGCTTGCAAAGGTTTTGCATCGATGAATATTCGAGACCAGTGAATGATTCATCATCAAAGTATGTGTCAGTTGTAGACAACGATGAGGTTTTCTTATCTGAAGCAACACTCAAGTACTGTATGCAAACAACCGAGGTTCTTAGACTAAGAAGAATCGAGACGGGATGGAGAAATCTCATACCCCAGATTGTTTCTATGGATCAAGGTATGAAAGATATAGTTGAACTTAGTTTGAGTTGCATTTCACAACTTCGGTACCTCGTTGACACGAAGGATATTGTGTTCCAAGGACCGAATGTTGTGTCCAAGTTGGTTGTACTAAAATTGGACAGAATGGAAAATTTGGAAGAACTGTTTAA | |||||||||
gi|260520859|gb|GT136695.1|GT136695 METBQ40TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence TTTCTAGAGATGAGCATATAT EST sequence (targeted fragment marked with yellow): GGGACAGAGGCAGAGGCAGTATTATTTGTGTGAAGTTCTTCGATGCTCATTCTCAGTCTCATCAATTTCTGACTCCAAATAATCATAATCATTTTGAAGGAAGGAAGAAGGGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTGAGATGAAGAGGCCATTTCCATGGGATGAAGATGAAATTGATGTATCAGATTCTTCTTCTTCTGATGATTCACCAAATGAAACCCCTAATGTCGCCACCGTTCTTCCTTCAATTCACATTCACATTCCGCTTCCAAATCCCTCTTCAGATGTCAACTCTCTAGATGCACTCACAAGACGGGCGGCAATGTATCAGGATTACATGAAGCATATCCCAATCCCAAGTAGTCGAGGCTCTCTCATCCCGTTTACTTCATGGATGGGATTAGGTAGATCCATCAAGCAGCTATATGGACAGCCTCTTCATTACCTCACAAATATCCTCCTTAAGCAATGGGACCAATTGAGAATCGGCAGTGAGGACGAATATACGCCCTTGGACGACATAATTCATCCGCGCAAAGCAGAATCCACCATCTGGCTCATGGAAGAAATCCATCGACAAACCTCATCACATTTTCATATTGCTGATCTCTGGAAAAGGACCCAATGTACCATGGGTTTATTGATTCCATTTTCCCAAAATTGGAGGACACATCTTGAAGCCATTTTG | |||||||||
gi|83665751|gb|DW016159.1|DW016159 EST1225120 MTY Medicago truncatula cDNA clone MTYAD81, mRNA sequence TTTCTAGAGATGAGCATATAT EST sequence (targeted fragment marked with yellow): CGGCCGGGGATTTTCATCTCTCTCACTGCAACTACAGTCTTCACCACCGCCACCGACCTCACCACCTCACCAATTACCACCACCGTCCTCACCATCACACCCTTCGTCTTCGCCCTCACCACCACCGTCTTCGACCTCCAATCCTTCAGATCTGAACACGCCGTCCTCACCACCGTCGCCGTCATCCACCGCATCCGTCGTTTCATTGCGCCTTCAATCTCGGACGAGTAACAAAAAAAAATACATAATACAGTAGAAAGAGGTTTACGAAGAGAAAATCTGAAAATTTAAGATGAAGGAAAGTTCAAAACGAAGAAAACCAGGAGAAGAAGAAGACGATGGTCAAGGCAGTAACACCAACAAAGACAGATTAAGCAGTCTGCCAGACTCTCTCTTGTGCCATATACTTTCCTTCCTCCCCACAAAAACATCTGTGTGTACAATGAGCCTTGTCTCTCATAGGTATCTTCATCTCTGGAAACATCTCCAAGATTTTGATTTCTACGATGTGTATTACCCCGATTCCGATGAAGAGGCCGAAAATTTCAAAGACTTTGCCATATTCGTCAACGCCGTCCTCTCTATGCGAAGTACCCGCGACATTCGGAAGATGCGTCTCTCTTGCGGCCAATCTCAACTTGATTCATTCGCTGAACGCTCTGTTGACACGTGGATCCGCACCGCCGTTGGAGCCCACCTTGAGGATCTTCATCTCGCTCTCTTCTCGTCCGAGGGTGAAGGCTTCAAACTCCCTCTCCCGGTCCTATC | |||||||||
gi|157978304|gb|EX526576.1|EX526576 MTGland-A071_2007-08-18_1/MTGland-71_O16_025_1 Medicago truncatula A17 glandular trichome Me TTTCTAGAGATGAGCATATAT EST sequence (targeted fragment marked with yellow): TTAGCATAACGTAGTACATCAGATGCCAACTTTCGATAATTACTCATAATAGTCTTCTCAAGTTTGAAAGCTTTTCGACAAAACAACTTGCAAGATTCTGTCTGATTCAAAAGTGGAACTTTGTAAACTACATCCACTCCATACACTTTCAATATATGCTCATCTCTAGAAATGATAATAACTATACTACCTGCACCTAACCATTCACGACGCACACCTATTTTTTCAAATTGTTCAACTTGATCAACATTATCAAGAATCAGAAGGGCCTTCTCACGACGTAGCCTACGTCGTATCAAATCAGTTGCCATGTTACGATTGCATATTTGATGGTGTTCTATGCCAAGAGTTTGAAATAGGATTTGCTTTTGTGCTTCGAGTGGACCATCATGTAATCTATAAATTTTGCTTACATCATCAATAAAACATGATGCACTAAATCGATGAGATATTTGGTCATATAAAGCCGTAGCAAGGGTTGTCTTCCCTATTCCTCCCATTCCACAAATTCCTATAGCACGAACACCATCAACTGAGTCCAAAAGCAAATGATTTTGTAATGCTTTTATAGGAGAATCAATCCCAACTAAATCTTTTGAAACACTTAAAGACTTGCACTCTAATATATTGATTATCTTTTGAACAATCTTTTTAATCTCTGCAGCTTGTGGCCTGAAATTCAATTTGTTCAATAACATTAAATCATCACGTAC | |||||||||
gi|9672269|gb|AL372516.1|AL372516 MtBA51E10F1 MtBA Medicago truncatula cDNA clone MtBA51E10 T3, mRNA sequence TTTCTAGAGATGAGCATATAT EST sequence (targeted fragment marked with yellow): CAGGCAATATCAAGAAATATTTCTTTTTCCTTTTCATCTAACCCATCAAAACTTAAGTGCAGCACATCCATGACATCATTATGCGGACTTTCTCTCAATCTAGCCAATGCACTCTTCCATTCAGCCACACTATGACCAAACAAAAATGAGCCCAATACTTTAATTGCTAGTGGTAGACCTTTAGCATAATCTAGTATCTCATTTGCCAAATTTTGATAATCACTCATAATAATTTTCTCAACTTTGAAAGCTTTTCGACAAAATAACTCGTAAGAATCTGTACTATTCATAAGTGGAACTTTGTAAACTACATCCACTCCGTACTCTTTCAATATATGCTCATCTCTAGAAATGATAACGATTCTACTACCCGCACCTAACCATTCACGATGCACAGCTA | |||||||||
gi|260525473|gb|GT140783.1|GT140783 METBK45TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence TTTCTAGAGATGAGCATATAT EST sequence (targeted fragment marked with yellow): GATTGGAGGCTAAGTCAGTTCTGGTACGATTCAGAAACTGCTAAAACGGTTGCTGAAGAAGTTCTTACTCTTTGCAGCAATGGCGTTGATTCTCGTGTTGCCTGTATTGCTTGTCCCACTCTTTATGCTTATCTCAAGAAAATGGATCCTAATGTTTCTGCGCAACTTCTTGAGTATGACAAACGTTTTGAGCAATATGGAAGTGATTTCACATTTTATGACTACAATCACCCCGAGGAGTTACCATCAGAATTGAAGAATTCCTACAAAGTTATAGTTGCCGATCCTCCTTACTTGAGCAAAGAGTGTTTGGAGAAAGTTGCTGAAACAATTTCTTTTTTCAGACAACCTGGAGAGTCATTTTTGCTTCTACTCACAGGTGAAGTGCAGAAAGAAAGTGCAGCTGAGATCTTGGGCTTGCATCCTTGTGGTTTTAGACCTCATCACTCCAGTAAACTTGGAAATGAATTTCGGCTGTTTTCTAACTACGACCCTGAAACAAGACTAGGAGGGTGGGAAAAATAGGTGTTTTTCTTTTGCTTGCTTTGATTTCTCTAAATTGATATATCTGTAAGAAGTTCAACTTA | |||||||||