| mature miRNA: TTTGGATTGAAGGGAGCTCTA species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|11906925|gb|BF642767.1|BF642767 NF072B01IN1F1011 Insect herbivory Medicago truncatula cDNA clone NF072B01IN 5', mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CACATATACTCCATGTTAATGTTATCCCTAATTTTCATGCAATAATCTCTCCCTCACTTCACTTACTCACATAAAGACTCTCTTCAATCCAAACAACCCATCTTTTCTCTATTCCTCCTCTCTTTCTTGTTATCAATTATCCTCAATTCAAACAGGAAATATTAGATTTGTACCTCAACATCAACATCCATGGCGAGTGAAACTGACATCAAATATGAAGAGGGTTTCGTATTGAATTCACGAGGAATGAAGCTATTGGCAACAAGTTGGATTCCTGCAAACGAAAATCCAAAAGCATTAATATTCATGTGTCATGGATATGCCATGGAATGCAGCATCACCATGGACAGCACTGCAAGAAGACTTGCAAATGGTGGATATGCAGTATATGGTATAGATTATGAAGGACATGGAAAATCATATGGGTTACCTGGTCTTGTTAAGAATTTTGATACAATCATTGATGATTGTTTACGCCATTTTAGCAGCATATGTGAAAAGCCAGAGAATAAGAAGAAGATGAGGTATTTGTTAGGGGAATCAATGGGANGAGCTGTGGGCTCTGCTTTGCACCGGAAAAAGCC | |||||||||
gi|11962242|gb|BE316510.2|BE316510 NF055C10LF1F1070 Developing leaf Medicago truncatula cDNA clone NF055C10LF 5', mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): AGAGTGTAGAGGTGTTGTTTTTGTTCTCCAACAATGGTTTCCTTCACAACAGTGGTGTCGCTACCTTCAATCCAAAGCTCAATACACCATCGATCTCGGCTACAAGAATCATAAAGGTGGTCATGTGAAAGATAATGAGCTAATGGATTTTATTTTCAAGCATTTCACTAATGGAAAGATGACCTTTTTGCATTGGACTAAAGGAGAGGAGATGGCCCCTACTATTGATGCCAAAGGAGCTACTCTTCTTGTTCGCAGATTACCGATTCCGGACCAAAAACGTGTTTATGTAGGAGATGTTGTGGTCTTGAAGAACCCTGAAAAGCCCGATGACTATCTAGTCAGAAGATTAGCTGCGACTGAAGGTTATGAAATGGCTTCTACTGATGAAAAGGACGAATCGTTTGTTCTTGAAAAGGATCAGTGTTGGGTAAGTGGCTGAAAAT | |||||||||
gi|151387340|gb|EV257211.1|EV257211 MTYD577TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GGTTGTTTTTGTTCTCCAACAATGGTTTCCTTCACAACGTGGTGTCGCTACCTTCAATCCAAAGCTCAATACACCATCGATCTCGGCTACAAGAATCATAAAGGTGGTCATGTGAAAGATAATGAGCTAATGGATTTTATTTTCAAGCATTTCACTAATGGAAAGATGACCTTTTTGCATTGGACTAAAGGAGAGGAGATGGCCCCTACTATTGATGCCAAAGGAGCTACTCTTCTTGTTCGCAGATTACCGATTCCGGACCAAAAACGTGTTTATGTAGGAGATGTTGTGGTCTTGAAGAACCCTGAAAAGCCCGATGACTATCTAGTCAGAAGATTAGCTGCGACTGAAGGTTATGAAATGGCTTCTACTGATGAAAAGGACGAATCGTTTGTTCTTGAAAAGGATCAGTGTTGGGTAGTGGCTGAAAATGAGAAATTGAAAGCCAAGGAAGCAATTGACAGTCGAACATTTGGTCCAATTCACATGACCAACATCGTAGGCAGAGTCCTATACTGTCTGCGTAATGCTGTAGACCACGGCCGTGTTCAGAACAGTCCTTTCAGCATGCAAAAGGATTCACCAGTGTTGGAAATGGAACTTGATGTTGATGAGATGGTAAAAAGTCACAAAGCCTAAACTTTAGTTCAGAGAAGCACTAACTTCTTGAATTTATCAATCCTTTTGTTTCTTCTTGTGGATTTTACTTGAAGCAAGGATGAAGATAAATATATGATTTTTAAATTGTTGCTATGGGATGGTTACATAACTCTGCATATTAGACATTTATTGATCTTTTCCCAACAGAAATCTGAAGCGGCTGTGTTA | |||||||||
gi|57502932|gb|CX534213.1|CX534213 s13dNF0TG05MJ036_322185 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GGCACGAGGTCTCTCTTCAATTCAAACTTTTCGGGTTTTGATTTGTGTTGATTTTCCAATTCCCAATGAGCGATCACTTGGTAGTCATCGTTGACCAACTCGACCACCCAGTTGTTCCTGTTGACCAACAACCTGCCCACCTTCCTTCCGATCCTTCCCCATCGCCATCTCCTGCCACTGCCGATGCCGGATCATCTGGATCTGGCTCGGCAGTGGATCGTGATGGCGATGATTGCGGTGATGAGGAGGAGCCTCTGATCCAGATGGTTGAGTGCCGTATCTGTCAGGAGGAGGATAGTGTTTCCAACTTGGAGACTCCCTGTGCCTGTAGCGGTAGTCTCAAGTATGCTCACAGAAAGTGTGTCCAACATTGGTGCAATGAGAAAGGAGACATCACTTGTGAGATCTGTCATCAGCCTTATCAATCTGGGTATACTGCCCCACCACCTCGCCCTGTTCCTGAAGAAACCACTATTGAAATAGGAGGAGGCTGGACATTATCTGGCTCACCCTTGGACTTGCGTGATCCTCGACTTTTAGCGATTGCAGAGGCAGAACGTCAATTCCTGGATGCTGAATATGATGAGTATGCTGCTTCTAATGCTAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTGAT | |||||||||
gi|11965821|gb|BE323785.2|BE323785 NF010B01PL1F1009 Phosphate starved leaf Medicago truncatula cDNA clone NF010B01PL 5', mRNA se TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GCACGAGATAATCGCTTCTGGTTCTGAGGGTCCCACTCAACAACAACTTTTCAACTTCCTTCAATCCAAATCCACCGATCAT | |||||||||
gi|157983267|gb|EX531539.1|EX531539 MTGland_B025_2007-06-01/MTGlandB025-_B09_039_1 Medicago truncatula A17 glandular trichome Me TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TTACGGCCGGGNNGGTTATGAAATTTTTAACATGCCNACATGGTTTGAAACCACAACTTTGGTTCTTAGTAAGATAATCCAAAGAAATATACTATGATCATCCAAGATATTAAGAAAATACTTACGACCATGCACATAAGAAGTATAAATAGGGTCCCAAATATCAAAGCAAATACGTTCGAAATTGACGGATGCATGAGAATGACGACTATATGTAAAAGGTAAATGCTTGTGTTTAGCAAAATAACAAATGTCACAAATACCTTTACTATTAGGTTCCTATGCTGCAACCTATTACTAGCAACTATGCTAGTTTGACAGCTGATAAGCTCCCTTCAAGCCAAACTTTGGTTCATGCTTCCAAATCCTCCTTTCATTCTGCTGCAGCCTTAAAAAGTGTGCAGATTCTTTCCAAATTTTGGGGGGGACGAGGTAGATGAAGTAGAAGAGGTGATAGAGGACACTATTAATCATGACAAGAGGCTTGAGCTGGAAGACTATCCAAGTCTATCTGAGAGCACTAAGACAAAGATAAAGAAGAAGAAGCACGTGAATAAAGTGATGCCTTCAAGCTTTAACTGAGCCAGAATGAGGACCCGTGCCCAAAAGGATACATCCAAATCCGCCTTGGCAGATACAGAATAGTTGGTCCAATTGCATTAGAATATCCGAGAATGTCAATGCTTTTGTTCAAATTTTCATAGAGAGGGTAGTCTTTTAGCTATTGTTTGGTTAAGTATGGNTATAATTTGACTAGTTTTCTTCTTTANGTCTTTTCCTTTCTTGGGANTGATCCGGANTCTCTTTTCATAGGNTTTACTCTATGTATCTCTGTTGTATTGGTCCNGGCCTCTCCTGTCTTTTATATTTTATTGCTTTGATGNNNANNAA | |||||||||
gi|148765781|gb|ES612475.1|ES612475 MTGland_A020_2007-05-03/MTGlandA020_H01_001_1 Medicago truncatula A17 glandular trichome Med TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TCAACAATGTCACCGACTGAATTCTACTCAACCCCAAGTTTATTCGGGATACCAACCTAAGAACTTCACTAAGCAAGAAGTTCAGAAAAGCAAGGATGCTTCTGTTTTGTTGGTATCACAGAAAGTCACAACAATGATAGAGTCCCTTCAATTTAAATATACAACAAGCATACGACCAAGAATCAAGCCTCAACCTCTCATAGTATTGCTATGGGTGTGGTTAATACCGATCTGATTCTTGGTAAGAAGCAAGTCCAATCCCTGAATGATCCTGAAAAGGTTACTGATTTTGATGTTTTGGCCATAGAGGATGAAGCTCGTCTAACCTTGCATAATGCATTTGATATGCTTGTTCCTGAGACTGATAATGTGTATGGGAGGCTTTACAGATAGACCTGAATACCGAATCACCCTCTGCAGGGAAGTTGGCTGCTAAACAGACGATTGATTTGGCTTTTCCTATAGATGTTTGTCCAGTGAGTGACACTGATTCTGAGGTACCCATCCCTAGTGGATCAAGGCCTGCAGCTACAGTGATTACTTCTGCCTCTGTCCATC | |||||||||
gi|7643223|gb|AW736295.1|AW736295 EST332379 KV3 Medicago truncatula cDNA clone pKV3-12H2, mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): ATTTTCAACCTTTTAGCCGAACCAGATTATAGGGACTCTCTAAAGACCTTCCTTTGATCCAAAAATCTGAGAAAGATCTCTTGGATTATTGTTCGATACTTGAAGGTGATGAATCATATAGTTGCTGGCAGGCTTATTTTGAGCTCAAAGATCTCCAAAAGGAGTCACCTAGAGCAGAGATAGAGAGGCTGATTATTGAGATTGGTGGTGTGAAATCCTTAATAGGATGTTTACATGGAATTGCACTAATGCGTAAACTGAAAAAGAATGATTTGAATTTAACCAATGAAATATATTCAGAAGAAGAACAAAATCCTTGTCCTAGACCAGATGGATTACCAAAATCTGCTGATGAAATGATGGAAGAGGAGCAAGCAAAAATGCCTGATTCATCATATACTAAACTTCTTAGATCCATGGGAAAGTCACCTGCATGGTATTCTGAAGCACCAGATCATGAAACAGATTGATGATTTTGTTTCAGTTTATAGGGAGGGATTAATGATGTGAATGTGTTAGTCGTAGGCTAGTTATGGATATGAATGAATTATGGAATAGC | |||||||||
gi|57493136|gb|CX524417.1|CX524417 s13dNF15F04AT032_448178 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GGCACGAGGAACTTCTGGTCTTTACTTTTTCCTTTTTATCTATTTGGAGAAGGTACTACCTTATAGATCTCAAAGTCCATCGTCATCAAAATATTGTGATGGATCTGATCTGAGACATGAGATCTAGTCTCTAGATTTTTTTGCAGTTAATTATTTTCTTTTTCCTATTTTTGTTAATTTCTCTATGATTCTCATATTTTCTAAACGATTTTTGCAGCTAATATTTTTTTGACTAGATTTACTTATTTTAAATTTTACTTTATACAAAATAAAATCTAAATTATTTCAATGAAGGTGAAGCTTTGATGTTAGGGTTTAAAGGGGTGGAGCTTCCTTTAGTCCAAATATGGATCTTGCTATGTTGATAGAGCTGCTTAGCTATGGGTCCCTCAACTCTACCCATCTTGTTCTTTGTGGTAGTTTTGTGGCTTCCATATCTAGGGAGCCTTATCACCTTTAGTTTAATCTTTCTTTGGATTGAAGGGAGCTCTACATCTTGCTCTCTTACTTTAATTTTA | |||||||||
gi|13373191|gb|BG454481.1|BG454481 NF112F05LF1F1044 Developing leaf Medicago truncatula cDNA clone NF112F05LF 5', mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): ATTTTTTTTACTCATAAGTCAGGATTCGATCGTAAGTTGATAATCCAAGTTATTGATGATCCAATTTGAATAATACTCTAAACAATAAAACCATCAGCCAGTTTTCCTAAATCAACAACTGTATTTTCAGGTCACCCCAGATCCAAAGAAGATCAAGATGCTCACTTTTCTATCATAAAGCTAACAAACCCTTCACTTGGCACTGTGCTTGGCCTTATTATGAGAACCTAAGGCATCTTCAGTCTTAAAAGACCTGTTACAGGGCTTGCAGCTGTAATCTCCACTAGACTTTGGAGTCTCCTGCTTCTCTGGCTGCTTGTTATTTGCAGCAGATTTACCAGCCTGCTTAGGGTAAGGAGTATCAACGTGGACACTACTCCTGCCACCAGTCTTCTCTGGAGTGACAAATTTTGCCTTCTTCACAGGTACAGGTGTTTCCTTGGAAGATTCAGCAACCCTCTTGTTGCTCCCTTCAGTCTAAAACAAAACTCAAAATTAAATTCAAATTCAGAGACAAATCGAAGCACAATATAGTCTCCAGTTACCTTCTTCGGTGTCTCCTCATCAGAATCTTCATCGCTTTCATCTTCACTACTACTTTTAATTTGACCATTCGCCATGAGCTAAACGGCACATTACCAAAATAAACTAAAAATATGAATT | |||||||||
gi|151392159|gb|EV262037.1|EV262037 MTYEQ71TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GAGATAGATATCACTCAAAACTCAGAAATATTTTTCGAAACAAACAAAAAACAATGGATCTTCGTGAATCAATAGCCAACCAAACCAACGTATCACTCAGCGTTGCAAAACATCTCTTCTCCAAAGAATCAGACAACAACATCGTGTTTTCTCCACTTTCACTCCAAGTTGTGCTAAGTATAATCGCTTCTGGTTCTGAGGGTCCCACTCAACAACAACTTTTCAACTTCCTTCAATCCAAATCCACCGATCATCTCAACTACTTCGCTTCACAGCTCGTTTCCGTCATCCTCTCCGACGCTTCTCCCGCCGGTGGTCCTCTCCTCTCTTTCGTCGACGGTGTTTGGGTTGATCAAACCCTTTCTCTTCAACCTTCCTTCCAACAAATCGTGTCCACTCATTTTAAAGCAGCTTTGTCTTCCGTTGATTTCCAGAACAAGGCTGTTGAAGTGACCAATGAAGTGAATTCATGGGCTGAAAAAGAGACAAATGGCCTTATTAAAGAACTTCTTCCTCTTGGGTCGGTCAACAATGCAACCCGGCTCATCTTTGCCAATGCACTATACTTCAAAGGAGCGTGGAATGATAAGTTTGATGCTTCAAAACGGAAGACTACGAGTTTCACCTTTTGAATGGTAGCCCAGTCAAGGTTCCCTTCATGACCAGCAAGAAGAAGCAGTTTATTAGAGCTTTTGATGGTTTTAAAGTTCTCGGTCTTCCTTATAAGCAAGGCGAAGATAAGCGTCAATTCACCATGTACTTTTTTCTTCCAAATGCAAAAGATGGGTTGGCAGCTTTGGTCGA | |||||||||