| mature miRNA: TTTTAGTTTATATGACCTAGA species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|157977983|gb|EX526255.1|EX526255 MTGland-A070_2007-08-17/MTGland-70_O23_041_1 Medicago truncatula A17 glandular trichome Medi TTTTAGTTTATATGACCTAGA EST sequence (targeted fragment marked with yellow): AAATCAAGTAGTGAAAATGATGAACATGAAGGTTGTGTGTGCATTGATGCTTATGGTAGTGCTTATGGTTGAAGTGGCTACCATTGCTGAGGCTCAGAATTGTGACCCAAATGAATTGCTCCCATGTGCTGGGGCAATTATTTTCAATTCTACACCTTCAGCTGAATGTTGCTCCAAATTGAGGGAGCAAACCCCATGCTTCTGTGAATACATCAGAGACCCAGATTACAGTCAATATGTTAACTCTCCTAGAGCTAGAGAGGTTGCTAGTGCTTGTAATGTTGTCATCCCGAATAATTGTTAAGTTCAAATAAACTAAAACCATCCATAAGGTATTGTCTTTCTTAAATAAAAAAGCTTGATCACTATATATATTGTGTGTACGATATATATGTGATGGTGTAGCTTTGAACTTGTGATATGTACTACAACAAT | |||||||||
gi|20277982|gb|BQ141859.1|BQ141859 NF037H11IN1F1095 Insect herbivory Medicago truncatula cDNA clone NF037H11IN 5', mRNA sequence TTTTAGTTTATATGACCTAGA EST sequence (targeted fragment marked with yellow): ATAATAATATTTTAGGTATATAAGTTAAAAGTTTGTTTTTAATTTGGTTTTGTTTGTATGTGTTCTTTTTCTGCTCAATTAACCCTTACTAAAGGGAACAAAAGCTGGAGCTCCACCGCGGGGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCGCGAGGTTGATTAATTACTTGAACGCTTACAGCTACATCAGGAAGAGAAGCAAATGGCCAAGCGTTGGATTCCTACCTTCAATGGTATGCTTGCTGAAAAAATTGTCCGTCCTTCCAAGAACTACGCCGGTGTTATCCTTCTAGAGAAGACTTCCAAGCTTAAACCTGGAAATGTGCCCGCCCGTTCCGCCCCGGATCCCAAATACACCTTTGGGAATTTCATTCTCCTCGTATTGCCAAGGAATGTCGAACACGTTTCCCTTGGCGGAACACGGTGGTCTCCTACATTCAACTTGATGAACCGAGTATCTACAACTCGCACAGAATATATATAGAATGCCATATCTACATCGATCCCACACCATTTCCTGATTGCTTTCAACAGTAACCACTTTAGTACCACATCCTCTTGACTATTAGTGAAAAAAACGGCCCCTATCGTAGAAAAATAAATAAAAACCCTACCCGGGATCTCCCATTAAACCCCCGATTAATCTGCCATTGATCCCCATATATCATTTCCAACGTTCTCCGGTAATATATTGTATATCGACACACTGCCAGAACACGCACGCTGCGCCTTCAGTTGGCCCTCCGTTGCAATGTAGTAATATATTTCTATCCCATATCTCAGATTGCATCCATACTGTGTATGCAAGCACAGCTCAACATCGCACGCGTGGTGCGATTCCATGACGCCGAGCACAGACGTTTCTGTCACGAATCATTATGACCGCGACATAGATACTATTAACACATATACAGCGTGGACCATACATCACTGCTGCTCACTCGCCCCCGCAGATATATCTCTCACACCTAGACTATAATGACGCTCGCCGCCTCGCACTATAATACCC | |||||||||
gi|157983851|gb|EX532123.1|EX532123 MTGland_B032_2007-06-24/MTGlandB032_D11_045_1 Medicago truncatula A17 glandular trichome Med TTTTAGTTTATATGACCTAGA EST sequence (targeted fragment marked with yellow): TCTAAAATTTGTCCAATTACTTGCTAATTAGAAATCAAGTAGTGAAAATGATGAACATGAAGGTTGTGTGTGCATTGATGCTTATGGTAGTGCTTATGGTTGAAGTGGCTACCATTGCTGAGGCTCAGAATTGTGACCCAAATGAATTGCTCCCATGTGCTGGGGCAATTATTTTCAATTCTACACCTTCAGCTGAATGTTGCTCCAAATTGAGGGAGCAAACCCCATGCTTCTGTGAATACATCAGAGACCCAGATTACAGTCAATATGTTAACTCTCCTAGAGCTAGAGAGGTTGCTAGTGCTTGTAATGTTGTCATCCCGAATAATTGTTAAGTTCAAATAAACTAAAACCATCCATAAGGTGTTGTATTTCTTAAATAAAAAAGCTTGATCACTATATATATTGTGTGTACGATATATATGTGATGGTGTAGCTTTGAACTTGTGATATGTACTACAACAATAAATAATAATAAAGTGATGGTGTTATTATATTT | |||||||||
gi|157984999|gb|EX533271.1|EX533271 MTGland_B047_2007-06-23/MtGland_B047_E01_004_1 Medicago truncatula A17 glandular trichome Me TTTTAGTTTATATGACCTAGA EST sequence (targeted fragment marked with yellow): GNNNTACGGCCGGGGNNTCTAAAATTTGTCCNATTACTTGCTAATTAGAAATCAAGTAGTGAAAATGATGAACATGAAGGTTGTGTGTGCATTGATGCTTATGGTAGTGCTTATGGTTGAAGTGGCTACCATTGCTGAGGCTCAGAATTGTGACCCAAATGAATTGCTCCCATGTGCTGGGGCAATTATTTTCAATTCTACACCTTCAGCTGAATGTTGCTCCAAATTGAGGGAGCAAACCCCATGCTTCTGTGAATACATCAGAGACCCAGATTACAGTCAATATGTTAACTCTCCTAGAGCTAGAGAGGTTGCTAGTGCTTGTAATGTTGTCATCCCGAATAATTGTTAAGTTCAAATAAACTAAAACCATCCATAAGGTATTGTATTTCTTAAATAAAAAAGCTTGATCACTATATATATTGTGTGTACGATATATATGTGATGGTGTAGCTTTGAACTTGTGATATGTACTACAATAATAAATAATAATAAAGTGATGGTGTTATTATATTTATCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCNTGT | |||||||||
gi|260527118|gb|GT144348.1|GT144348 METCQ77TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence TTTTAGTTTATATGACCTAGA EST sequence (targeted fragment marked with yellow): AACGATTCCGATCCTACACCTTCAACACAAGATCTTGACTCCGTTATGAAGAGTTTGCAGGATGAGATTTCTGCTTCGTCTTCTCTACGTGTGACGTCAGATTCCGGCGAGTCTCAGATAGGGTATCTTCTTGAAGCTTCCGACGACGAACTCGGTCTTCCACCGCCTGGATATGAATATCTGACGGTGAAGGAAGATAAGAAAGATGAAACTGAGTTGAGCCGAGTTTTGTCTGACTCGTCTGGAATCGGTGAGTTATGGGAGTTTGAGAATCAGATACCGAGTTATGATGAATCGTTTGATTTAGGAACTGGATTTGGAAGTTATGGTTATGAGAATAATAATAATAGTGATAGTGATTATGTTGCGTTTGATGGGATTTTTAATCATTCGGATTTGTATTACGATTCCAATGAATTTTTTGATCCGTGGCGGCATGGAACTTTGCCGGCCCAGTAGAATTTATTATGAAGAAAGAAAAAAAATATCAGGAAAGGGGAAAAAGAATTTTCCTAAATTAATTTGTCTAATGAAATTTTTTCTTAGGCATGTAAATCTTTTTCTCTCTCCGCTATTACCTTTTTGTTCCCTTTTTTTCTAGAGATAAAAAAAGGGAATTATAGGATATATAAATTAAAAATGATGAAGATGTGAATCATGGAACATGCGTTCGTGGTGATGAAATCGTTTATTTATTTAGTTTTTTTTTCTGAAAAAAAAAAAAAAAAAAA | |||||||||
gi|148766615|gb|ES613309.1|ES613309 MTGland_B006_2007-04-04/MTGlandB006_A09_040_1 Medicago truncatula A17 glandular trichome Med TTTTAGTTTATATGACCTAGA EST sequence (targeted fragment marked with yellow): ACGGCCGGGNNTGTCCTTCTTGTTGCCGATTTGCACCACAACACCGCTTGGATAGGGACCAGCCTGGAATAAAGGTCGTANAAACTATAAGGCACATGAAACAGAATGACAAGTATATAAATATAAATATTTGACTTATTAAATGTACTTCTGTTTTTTTAAGGGCTAAATGTACTTCTGTTACTTCTATTTAAACAAACAATATGTAACCAACCATAAACAAAATTTTAGTTCTTCCAAAGTTTTAATATTTTTCTCACAACCAATTTGGAGATTATTTTCATGACATTTTTTTCAATATACATATATCAGTGTTTAATTATATATGAATAGAAGCGGACACTAAGCTGTACCACTAGATCTCTTTGGATGATAAAACCAATCTTCGAAAACACAACATTCATGCACGTACGAGTCATGGCATTACTGTGCATGACCCTTGAACTCTTTGTAGAAGGTCAACAACCTCTAGTGCTATGAAGCCAAAACCATCAAAAGTAAATGATATAAAATCATGTTGATTGTCAGAACATGCTTCCCCATGTTTGGTCACTTTGTTTGACACAACTTGCAGGGCTATATGTCCTACCGTAAAAATCTCGACCTCTAATCTCATGAGTGATGAAACCCCGATCAAGTCCACACACACATGTTTTCCTCCTACCCATCCGTACATCATAACATCTACAGACCTAAGTGACCATCTTCTATCNAGTGGGTCAGTGAGAAAGTTCACATGACCCTCCTTTTTCNCTGATATTCCCGACCGCCTGAANATTCNAAANNNACATGCNTTTCTAACNANGTCNNNAAGNNNNTNNNNA | |||||||||
gi|20271593|gb|BQ135469.1|BQ135469 NF006F05EC1F1044 Elicited cell culture Medicago truncatula cDNA clone NF006F05EC 5', mRNA seq TTTTAGTTTATATGACCTAGA EST sequence (targeted fragment marked with yellow): CTTATTACGCCAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCAAACATCAAGAATACCTCACTAATAACTTCTTTTGCATACTAATTATTTTCCTAAATTCTCTATACATTATATAAAATGATGGCTCAATTTTATATAAGAAGACAACTTAAAACTTGAAGAATTTAGATAATAAATAAAATCTATTATTATTATTCCAAAAAGATGGATCTCTTCTTTTAAACTTCCGGGAATCGCTTATTTAAACTTAATTACAGAAGCTGTACTTTGCGTGAGCATCAACGTTTTACAGTGTCAAATACATGGCCGCAACTTATAACATTGACTGTAAAAAGCAAATTCTACTCATTAACATGACCACACATACTGCTTCTAAAACATTACACATCTCTTTACCATCTAGATTAATTTCTGGTGAATTTGGCACATGACTATAGTGCATACCTAGATATGCGATTGTACTCTCGACATCAATAATTAGCGTACTTTTAGACAAATTGATAATTCTTCGTGAGACTCGCCTTAATAACGTTATATAGTCATCGCGTTCGTCGTACATTAAGTATTCATATGTTGCAATTAGATAGAATATACTGCTCCTTTGTCTATGCAGCGAACACCGTAATTGCAATAACATTTTATGAAAGAATTCATCCCTTTTTGATATAAGATAGTTAATTTTACGCGCTAGTAGTATGTGTCTAATTAGAAAGTTTATGTCACATTATTTTGCTTCTCTTAGTAATATAAATTAAAAATAAAACTAAATCTTCGTTTTATATTATGAAGATCTCATTTTAATAGCAAATATTCGATTTTGTCCATCACATACCAATAACTATTTTGTATTGGTTATATACATGA | |||||||||
gi|157979750|gb|EX528022.1|EX528022 MTGland_A036_2007-05-23/MTGlandA036_B09_039_1 Medicago truncatula A17 glandular trichome Med TTTTAGTTTATATGACCTAGA EST sequence (targeted fragment marked with yellow): ATTACTTGCTAATTAGAAATCAAGTAGTGAAAATGATGAACATGAAGGTTGTGTGTGCATTGATGCTTATGGTAGTGCTTATGGTGGAAGTGGCTACCATTGCTGAGGCTCAGAATTGTGACCCAAATGAATTGCTCCCATGTGCTGGGGCAATTATTTTCAATTCTACACCTTCAGCTGAATGTTGCTCCAAATTGAGGGAGCAAACCCCATGCTTCTGTGAATACATCAGAGACCCAGATTACAGTCAATATGTTAACTCTCCTAGAGCTAGAGAGGTTGCTAGTGCTTGTAATGTTGTCATCCCNAATAATTGTTAAGTTCAAATAAACTAAAACCATCCATAAGGTATTGTATTTCTTAAATAAAAAAGCTTGATCACTATATATATTGTGTGTACGATATATATGTGATGGTGTAGCTTTGAACTTGTGATATGTACTACAATAATAAATAATAATAAAGTGATGGTGTTATTATATTT | |||||||||
gi|7570849|gb|AW696087.1|AW696087 NF101G12ST1F1099 Developing stem Medicago truncatula cDNA clone NF101G12ST 5', mRNA sequence TTTTAGTTTATATGACCTAGA EST sequence (targeted fragment marked with yellow): CCTTCATCAACAAATGAAACCCAAAACAAACAACGAATGTCCAAAATTCTGACTCCGTAAACCTCTAAACGACACCGTTCCGCTTTCAAAACGACGGTGTTTTCCTCCTTGTCTTCATCGTCACAATCATCGTCGTCTTCATTCCGCATAGATGGAACAAGCAGTTTTGGATGACATAATCAATCGACTCCTTGAAGTTCGTAGCCGTCCGGGGAAGCAGGTTCAGCTGTCGGAGACGGAGATCCGTCAGCTATGTTCTACTGCTAGAGAGATTTTCTTGCAGCAACCTAATTTATTGGAGCTTGAAGCACCTATTAAGATTTGTGGCGACATACATGGTCAATATTCTGATCTTCTAAGGCTTTTTGAGTATGGTGGATTACCTCCTCAGGCCAACTACTTGTTTTTGGGTGATTATGTGGATCGAGGGAAGCAAAGTTTAGAAACAATATGCCTTCTCTTGGCCATATAAAATAAAGTACCCTGAGAATTTTTTTCTTTTGCGGGGAAACCATGAATGTGCTTCTATTAACCGTATATATGGATTTTATGATGAGTGTAAAAGAAGGTTCAATGTAAGGATATGGAAGGTGTTTACTGATTGCTTCAATTGCCTACCTGTGGCAGCCCTCATTTGATGAAAAGATTTTTGTGCATT | |||||||||