mature miRNA: ACATCATCATCATCATCATCA species: Mesembryanthemum crystallinum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|86172620|gb|DY033080.1|DY033080 mcr02-1ms1-d04 mcr02 Mesembryanthemum crystallinum cDNA clone mcr02-1ms1-d04 5', mRNA sequenc ACATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CCGGTTGGCTGAAGATGATCACAAGATCTTCAAGCATCTAACTTCAATTGAGGTGGAAGATTCCAAAGACGTGAAATCCGGATACTCCATTACTTTTAATTTCAGCCCCAATTCTTATTTTGAAGATACTAAGCTTACCAAGACATTCACATTCCTTGATGAGGGAACCACAAAAGTCACCGCAACTTCAATCAAGTGGAAAGAAGGCAATGGAGTTCCAAATGGTGTAGATAATGACAAGAAAGGAAACAAGAGAGCTCTTACTGAGGAAAGCTTCTTTAGCTGGTTCAGTGAAACTCAGCAAAGTGACGAAGATATTCATGATGAGGTTGCTGAAATCATCAAGGAAGACCTATGGCCTAACCCACTCACATACTTCAACAATGAGGCTGATGAAGAGGATTTCGAGGAAAATGATGATGATGATGAAGAGGGAAAAGGTGAAGGCTCTGATGATGATGAAGACGATGATGATGATGACGAGGAAGAGGAGTAAGTGTAGTGTTGGATAATCGTTTTATCGCAGCTGCTATCCAATATGATTTTGCTTCACATTTTCGGGTTATAGCTTCTTGTAAAGTGGGTCTCTAATGGGATGATATCGATTAATAGGCTGAGTGTGACAATATGGCTTTTCTTTTGTGTTAGCAGCTCTGGTTATATGTAATAGCTAATCCAGACTTCTACAGTAACTAAGTTGGG | |||||||||
gi|9827105|gb|BE577306.1|BE577306 L48-2132T3 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment Mesembryant ACATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): GTCCACTCCGATCCCTCAATTACATATATGATGGTGGTGATTCCGTACTCACATCACATTGGCTCCTGCCAATTTGGGATTTCTCATTCTCTGCTTTCAGCCCATCAAGATCCAAATTAAAGCTACTTCTTTCATCTTTAATTTCTCACACATAGATTCCTTCTCACTTGTATTTATAGCTATAATCTCCATATATATCCCTTTTCAGTATAAGGAAGTTGTTGGGATGTATTCAAAAGATCAAGCTGGAAGGGTGCACAACTCAATCATGGAATTCTCCATTCCATGGAAGCACAGTACTTCACAGGGTTCCCAATCTGAGCATGGAGATGATGATCATGATGACCATTTGAAAACTTTAAGCATGGAGTATCTTGGCATCCAAACAGGACATACCAAAAGGAGTGGAAATCACTTCACATTCTCTTGCGGGGATGAGCAGAAATCATTAGAACAACCTCGGATAGCTGTTTCTGAGCAATCAACTGTACCAGTACCTCACTCGCGTTTTGAGCTAGCATACGGTGATCAGCAAATGATTTCTGCCAAGTACCCATACGTGGATCAGTGCTATGGGCTCTTTTCAGGTTATGGACCTCAACTCGCGGGACGGATCATGCTACCTATCAGCATGACAACGGAGGAAGGACCAATTTATGTGAATGCTAAGCAGTACCATGGAATCATGAGGCGCAGGAAGTCTCG | |||||||||
gi|86173770|gb|DY034230.1|DY034230 mcr02-4ms1-o08 mcr02 Mesembryanthemum crystallinum cDNA clone mcr02-4ms1-o08 5', mRNA sequenc ACATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CCGGTTGGCATGCAGGCTTCAGCTCTTTTGGGGGCAAAGCCCTTGGTACCATCATCATCTCTTCGAATAAGGTCAGTTCACAGCCCAACCATCGACACCTCCTCTTCATCAATGGCGGCGAATTCTTCTTCCGCTCCCAAATGGGCACAGAAGACCATCACTCTCTCTCCTCACACCCGTGGTTGTCATCTCATCACCCCTAAGGTACTGAAGGAAATTCGAGAAGATTTGTCTGAATTCAAATGTGGGCTTGCTCATCTTTTCTTACAGCATACCAGTGCTTCTTTGACCATAAATGAGAATTATGATGATGATGTTCGAAAGGACACTGAGACATTCCTTAATAGGGTGGTTCCAGAGGGAAGTTCCGCACCTTGGAGGCACACAATAGAAGGAGCTGATGACATGCCAGCACATATCAAGTCATCAATGTTTGGCTGTGCACTGACGATTCCAATTACTGATGGAAAGCTTAACATGGGAACCTGGCAGGGAATATGGCTCTGTGAGCATCGTGATTATCCAACCGCGCGCAGCGTTGTTGTCACACTTAATGGAATATAGGCATGTCAGAATATGTTTTCCCTATGATTTTCCTGCATAGCTCATGTATGAGAACTGAAATGTAGTGAGCTTGTTGATCCACAAATACTTTTGT | |||||||||
gi|8331785|gb|BE036769.1|BE036769 MP05C05 MP Mesembryanthemum crystallinum cDNA 5', mRNA sequence ACATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): NAACGCTCTCGAACCTGAGGGAGCCACGTGAAACTAGTTGGTCCTTACATCAACTGTATCGACTCTCTCTCGCTCTGTATGATTTCGCAACAATGGCGAGCAACCCAACCCGTCGATTGGCATCACTCATCAACATCAAACACCCAAACCTAACCCTATCATCAATCTCCCGATCATCAGAAATGGCGATCCGACCTCTATCGAACCAATCCTATCAACCCAATTCCAACATTGCGGAACAGGCAAAAGCGGCGCTACAGAAGGAGACCGAAATTGCGCAAGATATCGAAGCTAAAGCCGCTGCCAGCGATGGCGGTGAAGAAGATGAAGATGGAGATGAAGATGATGATGGCGTTTTTGTGAATAAGGAAACCGGTGAGGTTGGCGGGCCGAGAGGTCCTGAACCCACTCGCTATGGTGATTGGGAGAAAGGCGGCCGCTGCTGTGATTTTTGATTCTGTTATTGCGCCGATACTGCTACAACAACAACAATCAGAGTGATAATCCTGGCGAAGGCGGGATGCGGGAGGTCTAGATGTAGGCAGCCTTACCTCTAGCTAGTAGAGATGTTATTGCGCTCATNGTGGGTTAAAATCTGCTATTTGGTGGTTTATGAGTTATTTCAGTTATATATATAGGTGAAAATAAGCTCTAATAGGATTACCATTACTTTTATGAAGTGGGTATCTCATTCTTTGTAGGGGGGNTGAATTGNTTGATTCTGGTTGAGCTATTGATTNNNNNNNNNAANNNNNNNNNNNNNANNANNNANNNNNNTCTCTTGGGGGGGGGGCGGGGCCCCAATTCCCCCTAATGGGGGGNNNNNTTTTATTTAAAANNNNNNNGGCCGCCTTTTNTAAAAAAGAAGGCCTTTTTTNAAAAGGGGCCCTTCCNTNNAAAGGGGGCCCNNTNNNTTACCCCCGCCCCCCNNTNNAAAAAAACNGNGCGGNCGTNAAATAAACCTGACCCANATGGGCCCCCCTTTTACATAATTAGAGCGCTGGGGGAAAAAAAGGGACCCTTGGGGTGGGGGGGGACTTCTCATGCTCCCTC | |||||||||
gi|26565575|gb|CA837810.1|CA837810 MCT009F02_165551 Ice plant Lambda Uni-Zap XR expression library, 5 days 0.5 M NaCl treatment, ACATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): GAAACTCTCATCTCGCGCGCGGGAACTTGTCCGTATTGCCAATCACCCTCGCTCACTGCCGCCGCTCCCACCGCCAGAATAAAACCATATTGCTGATCATATAGGAGGACCAGTTTTATGAAGAAATAGTTAAAGCTGTTACCATTATAGGAATAGCATATTGGTCCTACTTCTTTTGATGTCGGGTGAGATTATTAGTTCGAGTGTATCACCTATTAATTGGGTAAGCTATTCTTATGGGAAATACAATTGTGGAACTTCCAATATACTTCTCAGATCACTTCCTTGTAGCCATCTGAATGTGACCTTGAGGGCAAAATATCCATCAATTAGCGGCTTTGTGGGTTTGGCTTCCCTGAAACTTGGCTCCAATGTTTCGATGAGATCTGTTAGCGATGAAATTCAAGGATATTCACCCGATGAAGAAGATGATGATGTGTGTCCTGTTGAATGTGTTAAAGAATTCTATACTGACGAGGAGTTCCTCAGTATTCTAGAGAAGTCCAAGAGAAGCAATGCTTTAGTTGTGGTGGACTTCTATCGCACTTCTTGTGGCAGCTGCAAGTACATTGAGCAAGGGTTTTCAAAACTTTGCAAGGCTTCCGGCGATGATGATGTTCCTGTCATCTTCTTGAAGCATAATGTGATGGATGAGTATGATGAACAATCAGAGGTTGCTGAACGACTC | |||||||||
gi|18022066|gb|BM299691.1|BM299691 MCR053H01_23910 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment presc ACATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CACAACCTTATTATATATGACATTCAACACAAAGAGAGCAATGATGAAATCTATGATCATGATGATGATGAAGAAAAGAAAGAGGAAGAAGGAGAAAAAATGAGTACTAATGAAC | |||||||||
gi|8331799|gb|BE036783.1|BE036783 MP05F04 MP Mesembryanthemum crystallinum cDNA 5' similar to calcium-dependent protein kinase 1 ACATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CCTTCACCCTTCGCACTATGTGAATCCACTTTAAACCCTTGGGTACCCTTTTAAACCCCTTGGTCCCCCTTTTAAACCCCGGGTTCCCACTTTGGATCCCTTATTCCCACCTATACCCTTGGTTTACTCCATTAATCTACTCATTTCTTCCAAACCCCATCTGGGAATTCTCTCTATTCTTTTCTACCCATCTCTTTCTCTTTTGCTCTTGCCAAACATTCACCTTTTCTGGGTGTTGTTTACCAATTACTTCCCCAAATCTCAGAAAATATCAACTTATCTCACTTACCCACCTGGTTTTATCTATTTAATAGCTGCCGGGTGTTCTTCAAATCTCAGAAAAAAAGCTTGGAACTCGAGTATCGATTTTTGACTGAAGGGTAATCGTTGCGCTGCCCCATGTGGCGATAAAACCAAGAAGAAGACTGAACCTAACCCATTTGCTGCTGACTTTTCCGTGATATAAGGATCTGATGCTAATACCACACTTTATGTGTTAATACACCCAACTGGGGCTGACATCAACACACAATATGAGCTAGGGACGGAGCTAGGAAGAGGCGAGTTTGGCATCACCTATTTGGCTACTGATATGGGTACAGGTGAAAAGTCTGCTCGCAAATCAGTATTGAAGAAGAAGAACAGAACTGCTGTTGATATTGAAGATGTGACGAGACAAGGTTAGATTATGAAGCATAAGCCTAAGCACCCTAATATTGTGACCTTGAACGATAGTTATGAAGATGATAATGATGTTCATATTGTTATGGACATTGGGGGAGGGGGGCGAGATGCTTGACACGACTTCCTCTAAGAGGGCACTTCACTGATAGGGGAGGTGCTCTTGTCACTAAAACCATTTTGGAGGTTGTTTCACATTGATAACCAGCATGGTGGGATACATTAAAAACCTTAGACCCGGAAACTTTTATTTTGCCCACCAGAAAANAAACATCTTCCTTTGAGGCGCACCAAATCTGGATTGGGCGGTGATTTTTAAACCCCTTGGGAAAATTTNTGGGNATTTCTGCCCCCCTCCTTTTTAGCGCCCGGGG | |||||||||
gi|8330418|gb|BE035409.1|BE035409 MO04H03 MO Mesembryanthemum crystallinum cDNA 5' similar to histone deacetylase, mRNA sequence ACATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): ATGTTCTCTANTTTTATTGATCTTTTATGCTCATTGACCCCCGTCTGAACGACTTCGGCACGAGCCATTCTCATTCTCAACGACACTGTACACTCTTCTCTTCTCTTCTCCGATCATTTTCTGTGAGCCCTAATTCCCCGCCCTTACGGTTTTCTGCAACCATGATGCAATTNTGGGGTGTTGAGGTTAAGAATGGAAGTACTCTGAAGGTGCAACCTGGTGAAGCGAAGGTTGTGCACCTGTCACAGGCCTGTCTTGGGGAGGTCAAGAAGGACAAAGGAAATGAATCCATTCGTCTTTATGTCCAGAAGAATTCCCAGAAGTTTGTCATTGGAATTCTTTCCCTTGAAAAATTCCCTCATATAAATTTTGACCTTGTATTTGAAGATGAGTTTGAGCTATCTCATGATTGGAAACATGGAAGTGTGCACTTTGCCGGATATAAAGCTGACAACCCAGATTCAATCCTTGACGAAGATGAATCTGATGATGATGAGGAGCCTATTCCTATTGAAGTCATGAACAATGGGAAACCAGAGACATAAGAGCCAAAAGCATCTGGTGACATGGCCGGTACTAGTGTGAAGCCTCAAAATGCAGAAGGTAAGCCCAAGGTGAAGATTGTCGAACCTGCCAAGAAGGATGAAGAGGATGATGAAACTGAGGATGAGGATGATGATGATGACGACGATGATGATGAATCTGATGAGAATTGAGATGAAGAGGACGAGGACATGCATAGCGCATGTGGAAGTGATGATGAGGATGATAGTGACGAGTAGATGAGAGTGATGAGGAGACACCCAAGAAGTCTGTGCCATGCATAAGAGAGCTGAGGATACACTTATAAGACTCTGTCCTGGCAAGAAGCACATTTGCTACTCACAGTAAACGCTGATGAAAAAAGTAGTTGCATTTGTTCGCACATCCTGAAAAAGTGTGAATCACAGTATCTGTCAGTTACAGGCGCTCCAATCTAGTGAGGTCCTGACTTTGTCGAGTCTATGCTTTACAGGTTACATTATCATGGTATCTGTCTAATGTCAATATCTAAACCTCTTCTGTAGCTGCATTTGTCCTTTTATATATGCATTATATTCTCTTCATCCCTCCACTTAAGATGGTTCGTACATTTATACTTTACTTCTACATCTTTCTTTGCGCTATTTCCTAATTTCTCTATATATTTCTAATCTTTCATTCATACG | |||||||||
gi|8578895|gb|BE131532.1|BE131532 L48-1516T3 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment Mesembryant ACATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CTGAGTTCCACAAAGCAGAAAAACCTGATCCAGAGAACAAAGATGCGAATGAGGACGACGATGATGATGATGACGACGACGCTGATGAGAAGGCAGGTGGAGAAGATGAAGGTGGTGATGATGATGATGGTGAGGAGGTGAACAATGAGGAAGCAGAACCAGAAGAGGAGCCAGAGGCCAACGGCGAAGGTGCAGAAGGGGAGGAAGACGATGACGACGAGGATGAGGAGGATGATGACGATGATGATGACGACGATGACGATGATGGTGGAGAGGAAGAGGACGAGGAAGAGGAGGAAGAAGAAGAGATGAGGATGAAGAGGAGCCACCATCTAAGAAGAGGAAAGGAGCTTAATAAACCCCCTCTTTGACATTTCTTTTTTTCCATTAATCTTGTTCTCAAAGGGGGTGAAGAGTGTCTCGGTAGCAACAACCTTTGTTCAGATGTGAGGAGGATTAAGCTTGTCAAGAATGTAGAAAAAAATGAGGATATTGTAACTGGTGGCGATGTATTAACCTTAGTTTGATTTTACAATTTTAGATA | |||||||||
gi|86170863|gb|DY031739.1|DY031739 mcr02-1ms1-o08 mcr02 Mesembryanthemum crystallinum cDNA clone mcr02-1ms1-o08 5', mRNA sequenc ACATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CCGGTTGGCTCTCATTTTCTCTCTCTCTTCTCCTCTTTCGTTCACAGTCACCGTTACATCAACACTCAACCAGCCATGACTGCTCAGACTCAAGAAGAGCTTCTCGCCGCTCACCTCGAGCAACAGAAAATCGACCATGATGAACCTGTTGTGGAAGATGAAGAGGATGATGACGATGATGATGATGAGGATGATGACAATGATGATTTAGAAGGAGCACTAGATGTAGATGGCAGTGGTAGGTCAAAACAGAGCAGAAGCGAAAAGAAGAGTCGAAAAGCCATGTTGAAGCTAGGGATGAAGTCCATCACCGGTGTCAGCAGGGTCACTGTGAAGAAGAGCAAGAATATTTTATTCGTCATCTCAAAGCCTGATGTATTCAAGAGCCCAACATCTGACACATATGTCATCTTTGGTGAGGCCAAGATCGAAGATTTGAGCTCACAACTTCAAACTCAGGCAGCAGAGCAGTTCAAGGCTCCAGACTTGAGCAATATCATTCCCAAGCCCGAGACATCTGNCATGGCTCAGGATGATGAGGAAGTCGATGAGACTGGGGTGGAACCCAAG | |||||||||
gi|8578895|gb|BE131532.1|BE131532 L48-1516T3 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment Mesembryant ACATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CTGAGTTCCACAAAGCAGAAAAACCTGATCCAGAGAACAAAGATGCGAATGAGGACGACGATGATGATGATGACGACGACGCTGATGAGAAGGCAGGTGGAGAAGATGAAGGTGGTGATGATGATGATGGTGAGGAGGTGAACAATGAGGAAGCAGAACCAGAAGAGGAGCCAGAGGCCAACGGCGAAGGTGCAGAAGGGGAGGAAGACGATGACGACGAGGATGAGGAGGATGATGACGATGATGATGACGACGATGACGATGATGGTGGAGAGGAAGAGGACGAGGAAGAGGAGGAAGAAGAAGAGATGAGGATGAAGAGGAGCCACCATCTAAGAAGAGGAAAGGAGCTTAATAAACCCCCTCTTTGACATTTCTTTTTTTCCATTAATCTTGTTCTCAAAGGGGGTGAAGAGTGTCTCGGTAGCAACAACCTTTGTTCAGATGTGAGGAGGATTAAGCTTGTCAAGAATGTAGAAAAAAATGAGGATATTGTAACTGGTGGCGATGTATTAACCTTAGTTTGATTTTACAATTTTAGATA | |||||||||
gi|9826707|gb|BE576999.1|BE576999 L0-1610T3 Ice plant Lambda Uni-Zap XR expression library, 0 hours NaCl treatment Mesembryanthe ACATCATCATCATCATCATCA |