| mature miRNA: GTTCAAGAAAGCTGTGGGAAA species: Mesembryanthemum crystallinum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|8331261|gb|BE036252.1|BE036252 MO21E10 MO Mesembryanthemum crystallinum cDNA 5', mRNA sequence GTTCAAGAAAGCTGTGGGAAA EST sequence (targeted fragment marked with yellow): GCACGAGAGGCGGCGACAGGGGCGGTTTCGGCCGTGGATTCGGCGGTCGTGGCGGCGACCGTGGCCGTGGCGACCGTGGACGCGGCCGCCGCCGTGCCGGACGCCGTGACGAGGAGGAGAAATGGGTGCCAGTCACCAAACTCGGTCGTCTCGTGAAGGAGCACAAGATCGCAAGCTTGGAGCAAATCTACCTCCACTCGCTCCCCATCAAGGAGCACCAGATCATCGACCAGCTCATCGGACCGGCCCTCAAGGACGAGGTGATGAAGATCATGCCGGTCCAGAAGCAGACCCGTGCCGGGCAGCGAACCCGGTTCAAGGCGTTCGTTGTTGTCGGGGACAACAACGGTCATGTCGGGCTTGTGGTGAAGTGCTCCTTGGAAGTGGCTACCCGCATTTTAGGTGCGATTATTTTGCTATAGCTTTTTTGGATTTTCGTGAGGAATAGGTTCCTGAAGTTCCATGATTTGGAAGCCCCACACTTTTTTTGTGTAATGGTGTTTGGAAATTGTTGTTTGGTTTCATATATGATGGTTTTTGAATTTTCTGTTTTATTTTTTTTGTTTTCTTTTTTGGGTCCTCAATTTTTTTTTTTTTTTTTTTTTTTTTTATATTTTTCTATCTTTATTTGCTGGTTGTACATTTTCTTGTGGTTATTTTTTTGTTGGTAATTTTTGCGTGTTTATATTCCTCGTTTTAATTTTGTTTTTCACTTATTCTCTTCGTAGGTTTTTTATTGTGTTCGTTTATTTTTTTTTTTGATTTTTTTTTGTTTTTCTTTTTTTTCGTTTTTTAGAAATTATACTTTCTTTTGTCATATATTTTCTTTTTCTAACTATTTTATCCTTTTTGTTTTCTTTTTTTTTTTTCTTCTTTATTTTATCTTGCT | |||||||||
gi|26561010|gb|CA833245.1|CA833245 MCS020A12_151768 Ice plant Lambda Uni-Zap XR expression library, 5 days 0.5 M NaCl treatment, GTTCAAGAAAGCTGTGGGAAA EST sequence (targeted fragment marked with yellow): CGATCTCAGGATCGATTCAATGTTGATCAATGAGCGAGCTAGCTCCACAGGCAGGAACAATTACAAGTCCTGCCATGCTTTTCCACAGCTTTCTTGAACTTTCCGGTTCTTTTCTTCTTTTTTTTTCTTTCTAGTGAGAAACAAACCATCATTGGGAAAGTTCAAGAAAGCTGTGGGAAAATATGGCGTTTCCCAGGACTTGGACCGACTTATTTCCAATGACAGACCGTACACGGTTCATCTATTCCGTTTTGTGGTAAGTTTTTCCCCAATTATGTTCTCCTGGTAGTAATCAGGAAGATATATATATAAATCAGTATCATATGAGCAATATTTGATGAGCATGAATTATTGCATATCTGTAATCTTTGAGGAGTCATTAGAATTTAGTTGTTGATCTACAGTATCAGATTTGGGTAATTATTCCTTCTGCTGTTCCAATTCTTGAGATATTCTAGGGAATTTATTTGGGATCTGTTTGGATGGTAACTCACTGAAATTCAAGAAGATTTGAACACAAAAAAGAAGAAACTTTCAAAATGCTATCATTTTATTTATCTTTTTCTCTATTTACTTCTTCCTTGCTAATTTCAGAAAACAATTCCCATTCACTGCACCATTATTGCCCATGCAGTTGTAGAAAATACAAATTATATATNTTGCTAATATTTATTTTT | |||||||||
gi|18024526|gb|BM302151.1|BM302151 MCA047H12_23486 Ice plant Lambda Uni-Zap XR expression library, 0 hours NaCl treatment prescr GTTCAAGAAAGCTGTGGGAAA EST sequence (targeted fragment marked with yellow): CTCTTTCTCTCTCTACTTTTTTTTTCTCTGTTTCTCTCTCTACCCCTAACTAGGGTTTAGCCCCTTCCTTAGGTCGGGCCAAATACCTAATAGATACACATACATACCCAATCAAATCAAAATCCAAATTATCAATACATATGGTCCTCTTTGTATTCTTCCTCAGCTTTCTTGAACTGCATCTTCCCTAATTTTTTTATCTTTTGTTTTTCCTCTCTCAGATCCAATTTTTTCTTTGGTAAATACTTATAATTTATCAAAAAAAAAAAAAGATGGATTTTTGGGAATTGAAAGATGGAAAATTTTAATTTGTGGGTTGCGGTTCAATAAAGCTGTGGGAAGATACAAATAGGCCCAACAAAAATTCAAGATCCGCCCTTTTTTTTTGCTGATCGATGATGGCTCTCTTCTTCTATTATGGTTCCTAAGTCCATCTTTTTTTCAATATATTTTTATCTTTTTGATCGCTATTTATTTAGATTTATCTTTTTTTTTTTCACGTCTTTTTATTTTTCTTACCTCATCTTTGTGGGTCTAACCCTAGTGTCCATAAGGGAAAGGGAA | |||||||||
gi|18024524|gb|BM302149.1|BM302149 MCA047H09_23482 Ice plant Lambda Uni-Zap XR expression library, 0 hours NaCl treatment prescr GTTCAAGAAAGCTGTGGGAAA EST sequence (targeted fragment marked with yellow): CTCTTTCTCTCTCTACTTTTTTTTTCTCTGTTTCTCTCTCTACCCCTAACTAGGGTTTAGCCCCTTCCTTAGGTCGGGCCAAATACCTAATAGATACACATACATACCCAATCAAATCAAAATCCAAATTATCAATACATATGGTCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCTTCCCTAATTTTTTTATCTTTTGTTTTTCCTCTCTCAGATCCAATTTTTTCTTTGGTAAATACTTATAATTTATCAAAAAAAAAAAAAGATGGATTTTTGGGAATTGAAAGATGGAAAATTTTAATTTGTGGGTTGCGGTTCAATAAAGCTGTGGGAAGATACAAATAGGCCCAACAAAAATTCAAGATCCGCCCTTTTTTTTTGCTGATCGATGATGGCTCTCTTCTTCTATTATGGTTCCTAAGTCCATCTTTTTTTCAATATATTTTTATCTTTTTGATTGCTATTTATTTAGATTTATCTTTTTTTTTTTCACGTCTTTTTATTTTTTTTACCTCATCTTTGTGGGTCTAACCCTAGTGTCCATAAGGGAAAGGGAATTGTATGTAATTTTTTTTCA | |||||||||