| mature miRNA: TACCGGTGGAGGAGAGAGAAA species: Mesembryanthemum crystallinum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|86173992|gb|DY034452.1|DY034452 mcr02-2ms1-m17 mcr02 Mesembryanthemum crystallinum cDNA clone mcr02-2ms1-m17 5', mRNA sequenc TACCGGTGGAGGAGAGAGAAA EST sequence (targeted fragment marked with yellow): CCGGTTGGCTGAGAAGAAATGAGGGGTCATTCGGTATGGGAAGAAGCGCCGCCGGTGGTAGCGGCGGAGGAAGCGGCGGTGGTGGGATGTTGAAGACAGTGGGTAGGGTTGTAAGAACTGGGATTAGTGGTGAACCTCTATCATCATCTTCTTCTTCAAATACTACTACCCATCATAATTCTCCCACAAAATCAGCATCAACAAAAACTACCCACAAATCCACCACATCCAAACACGCCCTATCTCTCTCCTCTACTGGTAATAACAATAATAATGGGATTAATAGCAGTTATATGCCTGTTTCTGCTGCTTGGCCTGTTACCCCTTATTTCTCTGTTGCTGATTCTGATGAGCTTGGTCAGTGGGAATGTGTTGAGGATTATTTTGATGATCGTGTTTTTGGGGGTGTACCTAGTGCACATGAAGTTGAGCATGCCCTTTTGTCTCTTCAACAGGTCATTCGTCCAGTCTCACCCTCGCTATCCACCAATGGAGAAACAGTTTCCGATTCAGACAATGATGCTGCAGATGTGATACAAAGGACATCCTCAAAGGGTTCCGATATGATAGATTGGATTGAGCCATCGATGCAAATTTATGATCAGACACTTGCAAAAACTTATGGATTGGGAGAGGGGTTTATGATGCTTT | |||||||||
gi|29408265|gb|CB543937.1|CB543937 MCU016D06_323518 Ice plant Lambda Uni-Zap XR expression library, 5 days 0.5 M NaCl treatment, TACCGGTGGAGGAGAGAGAAA EST sequence (targeted fragment marked with yellow): GCTCCTAGCCCGGTCGACGGCCCGAAACGCCGCCATTAATGGCCACCTCCCTTCTCTCTCCGCCATCGCATCGATCCACACCACCACCCCCTCTCTCTCCTCCACCGCTACCGCCCAGCCGACGCCCTACAATCGCCCTCCGCCGCCAGCGCCGGTGTCGAAGGCGGCGGAGTTCGTGATCTCGAAGGTCGATGACCTCATGAACTGGGCCCGACGTGGGTCCATCTGGCCCATGACTTTCGGGCTTGCGTGTTGCGCTGTTGAGATGATGCATACTGGTGCTGCTCGTTACGATCTGGATAGGTATGGGGTTATTTTCAGGCCCAGTCCCAGACAATCTGATTGTATGATCGTTGCTGGTACTCTCACCAACAAGATGGCTCCTGCTCTTCGCAAGGTGTACGATCAAATGCCCGAGCCTCGGTGGGTCATTTCTATGGGAAGCTGCGCCAATGGAGGTGGATACTACCACTACTCCTACTCTGTTGTCCGAGGCTGTGACAGGATTGTGCCAGTCGACATCTATGTCCCTGGTTGCCCACCAACCGCTGAGGCCTTGCTTTACGGAATTCTGCAGCTACAGAAGAAAATTAACAGGCGTAAGGATTTCCTTCACTGGTGGACCAAGTGAGGTGTTCAAGCTTTGCTTATTCCTTCCGTCTGGCTACATCT | |||||||||