| mature miRNA: TTCCACAGCTTTCTTGAACTG species: Mesembryanthemum crystallinum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|8330421|gb|BE035412.1|BE035412 MO04H09 MO Mesembryanthemum crystallinum cDNA 5', mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): TGTTCCTCAACTAAGTTACNTACTCNCAGCTCCTTGACCCCCGTCTGAACGCATTCGGTACGCGATCATAGCATTTAAGCCAAATCAAAGTAGCTACTCAGCAATAAACATCAACAGCAACCCAACCCAACCCATCCCAACATCTCCTCTTCCCTTCCATTCTCCCAAAATTCCCAAGACCAAACTTCCAATGGACAAAAGATCCCTAAACCACCTACCCAGATTGTAGCTCAATTTGGGTACTAAATTTCCCTCACCCCTTTACCTTGAAGAAATTGAACAACAAACCCTTGAGATTAAAGCAACCTTATTAGTACTACACTAAATTAGATGTACCACCAACCCAAATGGATATGACCACCACCACCACCACCACAACCACCATTCCCACCACCACCACCGCAACTAAAAGCCCAGAAACCGAGACCGAGACCCCGCCTCGGATCCAACCAACGAGGCCCATTTCCTTCTTCAACGGCGTCTTGAAACGGCACACGACCACAACCAACCCCCACATCACCACCTACACAGAATGTCTCATGAACCACGCCGCAAGCCTTGGCGGCCACGCGCTCGATGGTTGCGGTGAGTTCATGCCCGTCACTACCGNCACGGNCTCTGACCTCACCTGCCTCAAGTGCGCCGACTGTGGCTTGCATCGCAACTTCCATCGNCGTGACCCCGATGACCACCATCAGCACCACCACCACCTCTCTTCAGTCATCGAGTACCATCCCATCACCGCANCACCTGTTCAACGTCTTTCCGGCGTGCTTGGTGGAGCCCCGTCGTTCTCGTTCCCACTGCGATCTTTCTTCTACTACCGGCTCATGTCCACATGTTTCGATGAGCGCGCTTGATACACACTGAAGTCAATCCAGACACACACATCCCAGTGTGATTACTGCATTGGATATCTACGCTGACGTTAGGCCAGTTATCAGTCTTGGGAGATCCAGTTCGGTAAGCTGTGGAAGCGTGCTAATCCGTGTATGGTCATGCCCATGTCTGCCAGTGCAAGCTGTGCCTACAGATTCCCTAAGACCTTCTTCCCTAGTTGTCATGTGTTATACTCATCCCACTGGTCCTTTTTATTCTTCCCCTTATGTCCTCTTCTACGGTCCACTTGCTCTTCACTTCCTCCTTTTATACG | |||||||||
gi|18024526|gb|BM302151.1|BM302151 MCA047H12_23486 Ice plant Lambda Uni-Zap XR expression library, 0 hours NaCl treatment prescr TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CTCTTTCTCTCTCTACTTTTTTTTTCTCTGTTTCTCTCTCTACCCCTAACTAGGGTTTAGCCCCTTCCTTAGGTCGGGCCAAATACCTAATAGATACACATACATACCCAATCAAATCAAAATCCAAATTATCAATACATATGGTCCTCTTTGTATTCTTCCTCAGCTTTCTTGAACTGCATCTTCCCTAATTTTTTTATCTTTTGTTTTTCCTCTCTCAGATCCAATTTTTTCTTTGGTAAATACTTATAATTTATCAAAAAAAAAAAAAGATGGATTTTTGGGAATTGAAAGATGGAAAATTTTAATTTGTGGGTTGCGGTTCAATAAAGCTGTGGGAAGATACAAATAGGCCCAACAAAAATTCAAGATCCGCCCTTTTTTTTTGCTGATCGATGATGGCTCTCTTCTTCTATTATGGTTCCTAAGTCCATCTTTTTTTCAATATATTTTTATCTTTTTGATCGCTATTTATTTAGATTTATCTTTTTTTTTTTCACGTCTTTTTATTTTTCTTACCTCATCTTTGTGGGTCTAACCCTAGTGTCCATAAGGGAAAGGGAA | |||||||||
gi|18957834|gb|BM658323.1|BM658323 MCR058F10_70429 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment presc TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GGGAATTCTTCCCTCAAATTCCCAAGATTAAGTATGAGGGGCCTAATACCAAGAATCATCTGGCTTTTAAATATTACAATGCTGAAGAGGAGGTCCTAGGGAGGAAAATGAAGGATTGGCTTAGATTCAGTGTAGCATTTTGGCACACATTCCGTGGAACAGGGGGTGACCCGTTTGGTGCACCCACCAAACATTGGCCATGGGAAGATGGCACCAATTCTGTGGCCATGGCCAAGAGAAGAATGAGAGCTAACTTTGAGTTCATCGATAAGCTCGGAGTTGAGTTCTGGTGCTTCCATGACAGGGATATTGCTCCAGATGGTAAAACTTTGGAGGAATCGAATAAAAACCTGGATGAAGTGGTAGCTCTAGCCAAGGAACTGCAGGGTTCAAAGATCCATGTATTGTGGGGTACAGCTCAATTGTTCCATCATCCTCGTTACATGCATGGTGGTGCTACGAGCCCGGAGTTGGGTGTATATGCATATGCTGCTGCACAGGTGAAGAAAGCTATGGAGGTTACACATTATCTTGGTGGTGAAAACTATGTTTTCTGGGGCGGTCGTGAGGGATATCAGACGCTGCTGAACACAGATATGGGAAGAGAGCTTGACCATTTGGCAAGGTTTCTTCAGGCTGCTGTGAACTATAAGAAGAAGATTGGGTTTAATGCAACTNTGCTTATTGAACCGAAGCCCCAAGAACCTACCAAGCATCAGTATG | |||||||||
gi|26561010|gb|CA833245.1|CA833245 MCS020A12_151768 Ice plant Lambda Uni-Zap XR expression library, 5 days 0.5 M NaCl treatment, TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CGATCTCAGGATCGATTCAATGTTGATCAATGAGCGAGCTAGCTCCACAGGCAGGAACAATTACAAGTCCTGCCATGCTTTTCCACAGCTTTCTTGAACTTTCCGGTTCTTTTCTTCTTTTTTTTTCTTTCTAGTGAGAAACAAACCATCATTGGGAAAGTTCAAGAAAGCTGTGGGAAAATATGGCGTTTCCCAGGACTTGGACCGACTTATTTCCAATGACAGACCGTACACGGTTCATCTATTCCGTTTTGTGGTAAGTTTTTCCCCAATTATGTTCTCCTGGTAGTAATCAGGAAGATATATATATAAATCAGTATCATATGAGCAATATTTGATGAGCATGAATTATTGCATATCTGTAATCTTTGAGGAGTCATTAGAATTTAGTTGTTGATCTACAGTATCAGATTTGGGTAATTATTCCTTCTGCTGTTCCAATTCTTGAGATATTCTAGGGAATTTATTTGGGATCTGTTTGGATGGTAACTCACTGAAATTCAAGAAGATTTGAACACAAAAAAGAAGAAACTTTCAAAATGCTATCATTTTATTTATCTTTTTCTCTATTTACTTCTTCCTTGCTAATTTCAGAAAACAATTCCCATTCACTGCACCATTATTGCCCATGCAGTTGTAGAAAATACAAATTATATATNTTGCTAATATTTATTTTT | |||||||||