| mature miRNA: ATAATGTGTTGTTTTTGTTGA species: Mimulus lewisii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|238473953|gb|GR208336.1|GR208336 CBPI8770.g1 CBPI Mimulus lewisii floral buds (L) Mimulus lewisii cDNA clone CBPI8770 3', mRN ATAATGTGTTGTTTTTGTTGA EST sequence (targeted fragment marked with yellow): CATCGCCAACATTAGCTACACCAGCAACATCAGCATTGCACACTATAACAGCAGGTAACAAAAATAACAGTAAAACTGGCGGCAGTCAACAACAACAACAGCAACACATTCTGTCATCACACACGCATATCAAGTCAAGCAGCGGGAGCAAGGTAGTAACAAAACCAGTTGGTAATAATAAGCTAAAAACACAGTCGCTGCAAGTGACGTTTCCAAACGCACATCAGGTAGGACATGTAACTGCTGCAGCCCAAAACTCCACTGTTTTTGCAGTTCAGCAATCAGACAATTCCCAGAGAAAAGACATGAGTGGCGCTGCTCAGGTGCCACCGGGTCATGGCCCCACTCCACCTAGCATGATCTTTTAGCGAATAATTGGGTAGAAAAAAAAAAAAAGTTGGAAGAGTTTTTTTTTTTTTTGTTTTTTGTTTTTTTTTTCCCCATTATCTCATAATTTTGAACAGAAAATGCTGAAATTAAAAAAAAAACAAAAAACTGAACAATTTTTTTGAATGAAGGACAAATTTTCTCTGAATTGAGGAAGAATTGAATTTTAGGGGGAAAAAATT | |||||||||
gi|238469887|gb|GR200706.1|GR200706 CBPI4246.b1 CBPI Mimulus lewisii floral buds (L) Mimulus lewisii cDNA clone CBPI4246 5', mRN ATAATGTGTTGTTTTTGTTGA EST sequence (targeted fragment marked with yellow): ACTTTACACAGCAAGGAGAATAAAACTGGTAAAACAAATAATAATAATAATAACAACAACAACACATTTTTTAAAAAAGTGAAATGTCGCGAAGGTCTTTTTCGCTTTTCCTGCTTCTGGGATCGCTGATGTTCATTGTTGTCGCCCTGTTGGGGACAGTTTCTGCTGAAGATGACGATTTCCTTACGAAAGTAGCCGGCAAAGAAGCCGACGCAGGTAGCGATTCCTCTGAAGAAGACGATGATGACGATGACGATGACGATGATAGCGACGATGATGACAGTAGTGAAGAAGATGATAATTCCAGCGAAGAAAAAACAGGTGGCCTACAACCTTGCAGACTTAATAACCTTCTCCGGAGACTGGACACAGTCTGCCCCAAAATCCGGGATGACGAAATCAAAGTTCTGGAAGAGACCATCGAAGGCGTTGCCGGCAATATGAAAGCAATTGACGATATCATTAAACAAGAAGAAGAAAGCCAAAACCTGAAAGAAGATATTTCTCAAATATGGAAGGACTTCCGAGGACCGTCTGTCTCAGTTTTACCGGACGACACCTACCTGAATGTGATTAATATAACAGTACCTGGAGAACTGTCAGATTGCTCAGATGCTTTAAAAAAGGACCACAAGAAACCTGGAGTCTATTTAATTCATCCTGTTGGATCACCATACAAAGTTCATTTACTTTGTGTTGACGGCTGGACTGTCATACAAAGACGTTTTGATGGATCA | |||||||||
gi|238465064|gb|GR199438.1|GR199438 CBPI3439.g1 CBPI Mimulus lewisii floral buds (L) Mimulus lewisii cDNA clone CBPI3439 3', mRN ATAATGTGTTGTTTTTGTTGA EST sequence (targeted fragment marked with yellow): CTGGAAAGAGTAATTGGAACAATAGCAACACTACTCCTATGTCTTTTGATTTCTATTTTTGCGTCTGACAAATCTTGTAATCGACAAAAAAGCACTTCCTATTAATTATTTTAATTGTCCTTGTTTTAAATTAATTAAAAATTGTTTCAGTTGATTGTTATATAAAATGGTTAATGAATTGAAGTTATTGTATAAGTAGTTGCACCCTCAATAACATCAGTGTAGGAAGCAGCAGCAATAGCGAAATAAATGTAGGTGTTTATTGATAAATCTATGCATGTCCACCTATTTAGACAGTAGCATTCAATGATTAAAATTGTTATTTTAATGTAAAAAAAAAAAAAAAGGGCGGCCGTTTGTTTGTTTTTTTGAAACTAGAAAAACAAACAAACAAAAACAACACATTGTCCGACCCCCAGCCCTAAAACCCATTTTTCTCTCCCCTGTTATTTTGAATTGAGATGATGCAAACATCCAATGTTGTTGTTGTTGTTATAATCCTCATCATCATCATTATTTTTCTTTATCATCATCATCATCATCATCATCCATTCAGCAACAGCCTTTCTCTCCTTTCAAGAGTTTACTGTGAGGGGGGGCGGACAATGTGTTGTTTTTGAAAGCT | |||||||||
gi|238465206|gb|GR199581.1|GR199581 CBPI3542.g1 CBPI Mimulus lewisii floral buds (L) Mimulus lewisii cDNA clone CBPI3542 3', mRN ATAATGTGTTGTTTTTGTTGA EST sequence (targeted fragment marked with yellow): ATTAGCAGCCCAGTCTCGGAGTTTACCAGTCAAGAACAGTTTCACCACCTACAGTAAACCTTTACCAGCGATACCAAAGCTACCATATTCCTAGACTTCTTAGACTTGCACTAGCAAGAAAATATTCAGGTAACAATGATAAAAATATTTTGAATATTCAGCAGACTTTAAAACAAAAAAGACAAAACATTATTTTCATGTAATTAGAGACCTGATTCCAATAAATCTACCTAAAAACATTGTATAACTATACAATTTAACAACCCCTTCATTATGTATTCTGTTTCTTATTGAAAATAAGAAAATGTTTTTCAACCATTTTAACATTAAGAAAAAAGTTCTAGAGAATCTGTTTTGAAATGTATATTAGGGAAGTCTAAAAATAAATTATAAATCTTCAACAGGCAAAAAAGAAAAAAAAAGAAAGAAAGAAAGAAGGAAAAGAAACCTTAGAAAAGAAATTGTCCAAAATTTCTTCAAGTTATCAATTATAAATTCTACTCAAAATTGGAAATGCACT | |||||||||
gi|238469650|gb|GR203061.1|GR203061 CBPI5712.g1 CBPI Mimulus lewisii floral buds (L) Mimulus lewisii cDNA clone CBPI5712 3', mRN ATAATGTGTTGTTTTTGTTGA EST sequence (targeted fragment marked with yellow): AAGAGAATATGCACATATAGACATGACTGTGGATTGGTTGAATCGGTAGAGCATCGGACAAAATACCTTGCGGTATTTAGTAACGGTGCTTTACTTACTGTTTTCAAATCCCGCCGAGGTTAACTTTGCCTTTCATCCTTCGAGGACTGGATAAAATAAAGTACCAGTAAAATACTGGGATCGCATATATATATATATATATATATATATATATATATATCATGTGAATGGAATTATAGTTCAAAACTAAGACTAACAACTTCATTTAATTCATCCAACTCTCATTACAGAAAAGAAAGAAAAAGACTATATATATATATATATATATATATATATATACAAAAAGAAAAATGAACGTCTTTCCTTCTTCGTCAATATTAACAACACATTACACAACTGAAGGTAACTCTACGTGGTCGATCGACCCTGCTAGAACTAGCAGGCAACACTATTCTCAGATCATACCCTGCCGTCTTGCGGGAAAGGACACGTTAAATAATGTAGTCCTTCATACCCTTACAAAAAGACGGGATGGTCACAGTTGGAATGCTCGATACGGGTTGACCTGTGGCTAAACAACATCAAGAAACTAATCTTATTTTTATTAAAACTATGAGGTTTCATAACCATGTGAGAAATTAT | |||||||||