miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GTTCGGTTCGGTTCGGTTTTT
species: Mimulus lewisii
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|238473050|gb|GR207865.1|GR207865 CBPI8491.b1 CBPI Mimulus lewisii floral buds (L) Mimulus lewisii cDNA clone CBPI8491 5', mRN

GTTCGGTTCGGTTCGGTTTTT
.|||.||||||||| .||| |
TAAGTCAAGCCAAGGTAAACA

EST sequence (targeted fragment marked with yellow):
GGAGAGTGTATTAATACCACTGCAAAAGAGACACTTGCTGATTTTCCTTCAGTGCTCAATGGAAACCAGTTAGGAAATTTTGATAAGAAGTCTGGAAAGTCACCAACTAGAGCTAACATCAATTCTGCTGAGGACGATAAGGCTGCCCCTAGAGATTACGGTATGCGTCATCACAGGCGTGGTAACCAGAGTTATGGGAAAAACGGTTTTGGCGAGGGCAAAGGTAGGTATTTTCGCAACAAAGAAAACTATAATGGGCAACGTTGTAATAGCCCTAACCAAAACAAATGGAACCGAACTGAATACAATAACATCGAAGATTCCAATCTATCTTCTCCGAGAGGTGACCGTCCTCTTGCTAAGATGGATGCTCAGTGTTCAAATGATAAGCTGAAAAATGCTGACTTGCAGGTTCAAAACCATCAACATACTTACAAAGAAAGTAATGCCAAACCCTTTGAAAAGCAGCACAAAAAGTTTGACGTAAACCAAGATAACCGTAGGTACAACAACAAGTCTTCTAATCATTTCCAAAGGAAAGGAAACAACAATAGTTACAAAGATAAAGGATGTTTTTATTCTAATTCTTATAATAACAATTCTGGACAAGGCACTCAGGAAAAATTTGCTTATTCTCATAGACATTCTGATAAGAGCAAAGCTGTAAATATATCTAAAAATACTGCTAATCCTTGCCCAAAATCTGAATATCATGACTCTCAGGAAACTCCGGTTGTGACGTCTTCGGACAAGCCTCAACACAGATATA