| mature miRNA: TTCTTCTTCAAAGGCTGCTTT species: Mimulus lewisii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|238471301|gb|GR205576.1|GR205576 CBPI7158.b1 CBPI Mimulus lewisii floral buds (L) Mimulus lewisii cDNA clone CBPI7158 5', mRN TTCTTCTTCAAAGGCTGCTTT EST sequence (targeted fragment marked with yellow): ATACATTCTTCGAAGATAGAACAGCTGGTGGCTGAAATCATACGCAAGTAAGACTATAAGCAAGCAATATGGCAATAGAATTCAAATACCCAGATGGTACTGTTTACAATGGCATGTTTGATGACCGTGGACTTCGGATGGGAATTGGCTCCATTATTTTCGGTGACAAAACAACTTACAAAGGATCATTTGAGAGTGGACTGTTCACTGGCAAAGGCAGCATCAACTTTCCGGATGGCGCTTCGTATGCTGGAGAGTTTTGGCAAGGTAAATTTTACGGTTATGGTGTATTCGTAAATGTTGACGGAATGAAATATGAAGGCCAATTCAAGGACGGAGAATTTCATGGCTACGGTTTAGTTACATATGCTGATGGAACTAATGGCTTTCCGAAAAAAGAAGGTATCTTTGATAGAAATGTATGCAAAATGATATGCGAAAGTTCTGACCATGTAGAAAAAGCAAAGTCAATAGCTCGAGCTGCTCAGCAGATGCGAGTATAAGAAATGTGCTTTAAAACGCAAGTGTTTTCATTGATAATGAGACCATTACTGCACAAATATGATAACGTCACTCTCTCATATTATTATTAGATGAGATTCCTGCACTATTCCACATCTATTTTGTAGTTTTGCACTAACAGCAGTAATCTTTGAAGAAGAAGAAGAAGAAGACGAAGA | |||||||||
gi|238471328|gb|GR205603.1|GR205603 CBPI7174.b1 CBPI Mimulus lewisii floral buds (L) Mimulus lewisii cDNA clone CBPI7174 5', mRN TTCTTCTTCAAAG-GCTGCTTT EST sequence (targeted fragment marked with yellow): GCGACATGGAATGGGAACTGAGTAAAGAGAATGTTTTACCACGGAAAAATGGTCGAACAGTTTCACAGCTCGTCTCAGCTTTACAACCCAAAGGAGATCATGCTAGCCAGACTCGTGCTACGAAGCAGCAATTTGAAGAAGAATTAAGAACATACCAGGGTAATGACCCCTTAGATATTTGGTTCAGGTATATCACATGGATGGAAGAAACCAACCCACAAGGTGGGAAGGATCTTCCCTCTCTGCTCAGAAGCTGCTTGTTAACATTTTCTGAAGTGGACAGATACAAGAATGATCCAAGATATGTTGAAATCTGGGTGAAATTTGCCAATCTATATGACAATCCAATATTGTTGTATGAACATATGTTTGGTAAAGGGATTGGTTCTCAGAATGCAATGTTTTATGAATCCTGGGCCAGTGCGTATGAACTCCTAGGAAATAGCAAAAAAGCAGATGCCATCTTCAGTGAAGGTGTAAGAATGAAAGCAGAGCCCTTCAATTACTTACAAAGACGACACTATGAATTTCAAAGTCGTACATTTATTGGCATGATGAAAACGGCTTCCCTGACTGATAAGGACTCTGTGGATACTATTGAGGCTGAAGGCAGAGCTGCTTTTATGAGTTTGAAGACCAATGNG | |||||||||
gi|238464453|gb|GR197129.1|GR197129 CBPI1987.g1 CBPI Mimulus lewisii floral buds (L) Mimulus lewisii cDNA clone CBPI1987 3', mRN TTCTTCTTCAAAGGCTGCTTT EST sequence (targeted fragment marked with yellow): GAAAAGAAGGAAGAAAAAGTGGAGTTTGAAGAAGAGTTTGACGAGGATATGGGTATCCAACTTTGGCTTCTATACCACATCTTCTTGTCAATGGCTTCAAAAATTTGGTTGCTATATCTTTGGAAACAGATATTGAATTTGAAGAAGCAAAAGAGATCAAAGAGTTGTTTTCAGATCCTGAAAAGATGGCAGCTGCTTTGGCAGCAAGTGCTGCTACTACTGTTGCTGCAGCTCCATTTACCCCTGCAGCAGAAGAAAAGAAGGAAGAAAAAGTGGAGTCTGAAGAAGAGTCTGACGAGGATATGGGTCTTGGCTTGTTTGATTAAAGATGAAAATAAACATCCCCTTCTTCTT | |||||||||
gi|238468166|gb|GR207240.1|GR207240 CBPI8122.b1 CBPI Mimulus lewisii floral buds (L) Mimulus lewisii cDNA clone CBPI8122 5', mRN TTCTTCTTCAAAGGCTGCTTT EST sequence (targeted fragment marked with yellow): CACAATTAACATTGAAGAATCTTTGCGAACATTTACTTTCAAAGTATGGATTGATTGTGTCCGAACAAACTATAGCCAGTCATCTAGATGGAAGAATAATTTCATTGAAGCAAGTACATTTATGCCCAGAGACAGTCAACAATCACAAAAACAAGCTTTTGAGGAAGGAGTATATCGAGAATGTGATGAAATCATCTGCTGAAGGAAAGTTCTTTGTATATATCAGCAAGTCAAATGTCAACCTTTTCCTTAGAAAAAGTAAAGGAGGGTTAACGAAAGGAACACGTGCAGTTGCGCATCTGCCTTCTTCCAAAGGTCCGACTATCCATATGATTGGGGCTCTTTGTCAAGCTGGATTGATCGATTTCCAAAGAATAAGAGGAACTTACCGGAGTGACTCGTGCAGTGTATGGGTACGAGACCTGTTGCAAAAAGTTATTGGCAATGGTACTTCGTGTGAACAAATTGTGATGGTTATTGACAATGCCTCTTGCCACTCGGATTTAGAAAACGTCTTAAGTGAGTTCGAAGGAGCAACACTTCTTCGTCTTGCGCCTTATTCACCCATGTTAAATCCATTTGAGAGTGTCTGGAGTGTGATTAAGACTCAACTCAAACAGAAGGAAGCCAATCAGCTTTCCGAAATGACAGCAGGTGATCCACAAAATGTATTATCAAAATCTGAACGGAAACTTAGATTTGTGGAAAGGTTGATTGACGAAAGTGTAACCGTCATAACGCCTAGTAT | |||||||||
gi|238461080|gb|GR193300.1|GR193300 CBPH2402.g1 CBPH Mimulus lewisii floral buds (H) Mimulus lewisii cDNA clone CBPH2402 3', mRN TTCTTCTTCAAAGGCTGCTTT EST sequence (targeted fragment marked with yellow): TCCTGATTGTCACTGCATTTATTACCGTGGCGTTGACATACTTTCAACTTGCTGCTGAAGATCATGAATGGTGGTGGAGGTCTTTCCTATGCGGTGGATCCACGGGCTTGTTCATTTATGGCTACTGTCTGTATTACTACTATGCACGATCGGATATGTCAGGCTTCATGCAGACCTCGTTCTTCTTCGGGTACATGGCTTCTGTGTGCTATGCTTTCTTCCTAATGCTTGGAGCCGTAGGTTTTCGTGCCGCTTTGTTCTTTGTGCGCCACATTTATCGCTCGATAAAGTGCGAATGAGAAATGAGATTATTCATATTTCTCTGAAAGTTCAACAGGTATATTTCTTCGATAAACTTTTAACCTATTAAGTCTGTCTTAACATATACCAGTTTCTAAAGAAGCATTTGAAGAGGATGCATTTGCTTATATGTACAGAAGAAGAATATGTTGATTCGTGAGAATGGCGAGGTACCATATGATAGGTAATGTGGCATGACAAAGTATTGAACATGGCAGCGTTCTGAAGTAAAATCTCCATTAGGTTTACCTGTGGAAGCATTTCTGATCAAAAGAATTAGTTTATTGTCTAAACTTATATCAAATAATAGTGTATGGATTTTGCTATTTGCTATAGTTTCTATTATTGATTTTTTTTTTTTTTGAAAAGATTTTTGTATCAAGAGATGTGATGAAGGAGGTGAAATGTTGGCTCAGTTAAC | |||||||||
gi|238459704|gb|GR192520.1|GR192520 CBPH1863.g1 CBPH Mimulus lewisii floral buds (H) Mimulus lewisii cDNA clone CBPH1863 3', mRN TTCTTCTTCAAAGGCTGCTTT EST sequence (targeted fragment marked with yellow): TTGCTGCACAGCAGACAATCCAGGAGCAGCTGAATGCTGTCACAGCTAACATGGTCATGCTTGCTGCCAACGAAGAGAAGGCGAAATCTGGGAAGAGCTCTCCACGAGGCGAAGCGAAACCTAAAGCTAATGGACAGACAAACGGCGTCAAATCGGGCAAAGCAGAACTTGTTGATGCGATCAAGGATTACGTAAAGAAGGGTTCTCCTCCAGCTCAGCTCATGGAGTCTCTCTCTGGCACTCACCAAGAGATCATCGATGCCCTTTTCGAAGCCCTGTTTGATGGAGTTGGAAAAGGACTCTCTAAGGAGGTTTTGAAGAAGAAGAACTACATTGCAGCTGCTGTTCAAGACGAGAGCTCGCAGATGATGCTGCTTCATTCTGTGGAAACCTTCTGCGGGAAAGCAGGCCCTGATGCAGCGAAAGAGATAGCTTTGGTTTTGAAGGCGTTCTATGATAATGATGTGCTGGAAGAAGAGTTCATTGTTGATTGGTATGAGAAGGGGTTGATTGGCGACAACAAAGGCTCGTCGATTTGGAAGAACGTGAAGCCGTTTGTCGAGTGGCTGCAGAGTGCTGAGTCCGAGTCTGAAGAGGAGTGAGCTCTAATGGACTATGCTTATTTTGCCATTATACACAATTCTATGTTTTATGTCTTGTGATCTTTTTACTGGTTTTATAGTTTGTGCTGCGTTTTCTTTTGGACCGGGACACTCTTTTACTATGTGGTGTGTGTTTGTTGGACTTTGTTTATTTAATAAAGCTGGTGTTTGGTTGTGCGACTT | |||||||||