| mature miRNA: AGTCAAGGATGACTTGCC species: Nicotiana benthamiana database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|120549908|gb|EH368772.1|EH368772 C03_j001_plate_65 j001 Nicotiana benthamiana cDNA 5' similar to Hypothetical protein, mRNA s AGTCAAGGATGACTTGCC EST sequence (targeted fragment marked with yellow): GCTACTCATCCTTGATTATTCGGTTGGATAAATTAATCTTTTTTATGGTAACTATATTTTTATAATGTAAACTATTGTAAGATTTGTGCAAATGTATTGTAAGATTGTCTAAAAAAAAAAAAAAAAGG | |||||||||
gi|39878686|gb|CK294866.1|CK294866 EST757580 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana AGTCAAGGATGACTTGCC EST sequence (targeted fragment marked with yellow): CAGTTCCACTGTTACGTGCCTCAGGCGATTTTCACCACCTCCGCCGGCACGACCACCCATCTCCACCGTACCATGGAAACAGCCACCACTGAGGCCATTAATCCATCCAACACTCGTCTGGGATGGATCGGTACCGGTGTAATGGGCCGCTCTATGTGCGCCCACCTGATTAATGCCGGTTACACCCTCACGGTTTTCAACCGTACACCATCCAAGGCCCAGGAACTAATCTCCATGGGAGCTCACTGGGTTGACTCCCCAAAGGCCGTCGCTTCCCAATCGGACGTCGTTTTCTCTATCGTTGGCTACCCTTCCGACGTTCGCCACGTCATCCTCGACTCGAACTACGGTGCTCTTTCCGGTATGCGTCCCGGTGGTGTCATCATCGACATGACTACTTCGGAGCCTTCCCTGGCTGTTGAAATTTACTCCGCCGCGTCTGCCGCTGGCTGCTCCGCTGTCGATGCCCCCGTCTCCGGAGGAGATCTCGGAGCTCGGAATGCTGCTTTATCCATCTTCGCTGGTGGAGAGGAATCCATAATCTCGAGGCTTAACCCGTTATTTAACCTTCTGGGCAGAGTTTATTACATGGGTGCCCCTGGAAAAGGGCAGTTCACAAAACTGGGAAACCAAGTAGTTATTGCTTCCACAATGGTGGGACTATGCGAGGGTTTAATTTACGCACATAAGGCTGGTTTGGATTTGAATATGTTTTTGAATGCGATATCAACAGGGGCTGCTGGCTCAAAATCTTTAGACTTGTATGGGAGCAGGATACATTGTAGGGACTTTGAACCTGGATTTTATGTGAATCATTTTGTCAAGGATTTGGGGATATGTTTGAGGGAATGCCAGAACATGGGACTTGCTTTGCCCGGGCTGGCGTTGGGCTCACAGCTCTATC | |||||||||
gi|120550478|gb|EH369342.1|EH369342 C08_j001_plate_74 j001 Nicotiana benthamiana cDNA 5' similar to Kinesin, mRNA sequence AGTCAAGGATGACTTGCC EST sequence (targeted fragment marked with yellow): CCCGTTAGAAAGTCTCCTAGTTGGTGGTGGGGGAATCAAGCTCCTGAATTGATTTGCATAGAAACAAGGAATTCAAGTTCATAAGAGTCAGTTGTTGCAGATTCCACGTAATCCAAATCATCCATGGAACCTGCTTCAGACTGAATCCTACTTGCCTCGTAGTCTTGGACATCCTTTTTATTTGCTGCAACTTTGGATATAGGCTGATCAGGATACACCTTTGAACTGTCAGACGAGCATTTCCTATATAATAAGACTATTGACTGGTGGCCAGGGAAGAGAATTCTTCTGAAAGTCTTTGGGATCTAAGCTTCGGCTTCTCATCTTTGACTCAGACTTCTGTCTTAACCTGAGAAAAGATTTGAA | |||||||||
gi|120546445|gb|EH365309.1|EH365309 d02_j001_plate_140 j001 Nicotiana benthamiana cDNA 5' similar to unknown function, mRNA sequ AGTCAAGGATGACTTGCC EST sequence (targeted fragment marked with yellow): TACTACGCTATTATAGACTTGCATATTTAACAGAAAGACCCTTGCTCCTTATACACATGACTTGTCCATAATAGCTTAGTATTTGATTAGTTTACCATTTTACATAATAGAAAGTCATCCTTTACTATTAAACTCATGGCATTGCCTGAATAAGATATGAGTTTAGTAGTAAAGGATGGCTTCTTTTATGCAAAGT | |||||||||
gi|227566863|gb|GO603950.1|GO603950 NBERO1CH_T3_043_D03_09JUL2006_025 NBERO1CH Nicotiana benthamiana cDNA, mRNA sequence AGTCAAGGATGACTTGCC EST sequence (targeted fragment marked with yellow): CTCAACCTCACGCGCCGCGCTCGAATCAATCGTTTTTCTCTTCTACCACCATGTCTAACATTGTCTTCCCGATCCACCACCTCCGTAACCACCTCACCCCCCTCCTCCCCACCCTCCCCACCTCCTCCAGACTTCATGATCTACGATCGCTTAGCTGAACAAGTCAAATCAAAGATCAAACGCCTCGAAGACCCTAACCCTAAGTTCCTCCAGTACAATTCCCCGCACCCTACGGTAGCGGATCACACCTCAATTCTCTCATCACCGGAGACTAAAATCACCACTCTCCCTAACGGTCTACGTGTCGCTACTGAATCGAACCTGTCATCCTCAACGACTACCGTCGGAGTTTGGATCGACGCTGGATCTCGATTTGAGACGGAGGAGAATAACGGCGTCGCGCATTTCCTTGAGCATATGATTTTTAAGGGAACGGAGAAACGGCCTATTAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCGTATACTTCTAGGGAACAGACTACATATTTCGCTAAGGTTTTGGGATCTGATGTGCCAAAGGCGATTGATATACTTGGGGATATTTTGCAGAATTCGCTTTTGGAGGAAGATAAGATTGTTCGGGAGCGTAGTGTGATTCTTCGGGAAATGGAAGAGGTGGAAAAACAACCGGAGGAAGTCATCTTTGACCAATTACATACTACTGCATTCCAGTACAGTCCATTG | |||||||||
gi|120543739|gb|EH363620.1|EH363620 C04_j001_plate_1 j001 Nicotiana benthamiana cDNA 5' similar to Hypothetical protein, mRNA se AGTCAAGGATGACTTGCC EST sequence (targeted fragment marked with yellow): GCGCCTACTCGTTTGGTTACCTCTTTCTATTTTTACCCTGAAGGTGATGCCCTTGCTTGGTTTGATTGGCTATTTCGTAACAAACAATTTTATGATTGGAACCATTTCAAGGAGAAAATATATTTGCGATTTCGGAAACGACCTGTTATAGAATCAAAGAGAAGGCTGGCCGATTCATCCTTGACTTATCATAGCTATATTAATCCCTCTAATTTGGATTCCTTTGAGGCTCAGGTATCTTCTTTAGCTGATTTGCGCCATAATTCCAACTTCTATGGTTTAGAATCTGCATCTGAAGTTGGTAACTCAGACTCCAAGCATGTGTTCAATGAAATGTCTCCTGGATTTTCACCAGAGCAGTAGAAGAACATTATTATGTTACAACAGCATGCCAAAGCACCAATGCAAACACTTATGTCTCGCACTTTATAGCTGATTTGGACGACATTCAGTCACCTAAGGGGTTCGACACAATGTTACATAGCTGTTGTCCCAATGATTTGTTGACGTACAATCAGATGCTCGATCTACAGGCCCCGAAAGCAGCGTCGTCCAACTATTGATAAAAATGCTCATAAAGATATGTCAGAGAGGTATGTTATGCAACTTCTCTTGATTGTGTCACTAGTTAACAACACATTGAATTTGAGACCTGGGATGATCTGTATCTTACTGATTTTTTTATGGAGCTTGAGACTATTGTGAATCTAAAAAAAAA | |||||||||
gi|227563005|gb|GO603031.1|GO603031 NBERO1CH_T3_032_H09_7JULY2006_065 NBERO1CH Nicotiana benthamiana cDNA, mRNA sequence AGTCAAGGATGACTTGCC EST sequence (targeted fragment marked with yellow): CATCCACCATCTCAAAAACCCGAATCAAATTACTCCGATTTTCGCCGGCCCAAACCGAAACCCAGGCCGTTGAGTAATACATACTCGGCCCGGTCTTTTTCGTCTGGTTCGGTTTGTTCGTCGCTTGCTGCTGAATTCCTCAGTGAAAGTTGTTCAAACTCACCTTTGGTTGTTGGATTAATTTCGCTGATGAAGTCTACTTGTGGGCCCTCTGCTACGATGAGTGTTTTGGGAATTTCTCCTTTGAAAGCGTCTTCGATACTTCCATTTTTTCAAGTCTCGAAATGGCTTCCTTGTAATGTGCCCAATACTATTGGGTCCTCGGCTGCTCATGTGCCCAGTACTATTGGGTCCTCGGATACTCGGCCCGAGGTGGATAAGGGTGGAACTGAATGTAGTAATAAAAAGTTTGTTTGTTCGGAGCCTTTGGTTTCGAATGAATTGAAGGCTGTTTCGAATTCGAAGAGCTGTTGGTTGTCAAAGGTATTGAACGTTTGTTCTGATGATGCAAAAGCTGCATTTACAGCATTGAGTGTGAGCATAATGTTTAAGTCATCTTTGGCTGAGCCAAGATCAATTCCGTCTGCTTCCATGTCACCTACTCTCGATGTGGGTGACCGTATAATGGCT | |||||||||
gi|227577148|gb|GO612356.1|GO612356 NBREL4_JP_006_H08_13NOV2004_050 NBREL4 Nicotiana benthamiana cDNA, mRNA sequence AGTCAAGGATGACTTGCC EST sequence (targeted fragment marked with yellow): AGTGCAGATATAATCTGGTATTAGCCATACTATATACATAAGAAAATAAAAAGAACATCTTGCTGCTAGTCCAAATATTCGAAAAATCATCCTTGGCTTTTCCCTGCAAAAGATTCTTGACCAGATGTAGCATCAACGAGTTTGGTATACTTGCGGTGACGCCTCTCTCTTGCATATA | |||||||||
gi|120548458|gb|EH367322.1|EH367322 f03_j001_plate_142 j001 Nicotiana benthamiana cDNA 5' similar to Fgf, mRNA sequence AGTCAAGGATGACTTGCC EST sequence (targeted fragment marked with yellow): GCGCGCCTACTCTCTAGTTCTAGAGTTTACTTTGTGAACTACTATTAACTAGTTATTGTACTGGAATTTTGGTTCATTTCTGTTGAGTTCTCATATTACCTCTTCATCCTTTCGGATGATTCTATGTGTTTTTGCCTATGCACTTTGTAAGTCATCTTTGGCGATTATTTGATGTAGATGAATCTAAAATTGGTCCAAAAAAAAAAAAATG | |||||||||
gi|39879175|gb|CK295110.1|CK295110 EST757824 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana AGTCAAGGATGACTTGCC EST sequence (targeted fragment marked with yellow): GCGTGTGCCTCTTTGGTGATTGAGCGGAATCTGCAGAGTCTGGTTTTCTGGAGCTTCGTTCACATTTTCCATCTTTTCCCCCTTGTATAGGAACCGGACAAACCCTAGCCGAATTAAGAAGCCACAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCTCGAAACCTCACCACATGCCAATCACTCCGACGTCTCTCTACATCTTCATCCGCAGTCGCCGCCACATCTTCCATCGCCCCGGCCACCGGTCCACCTCCTCCAGATGCAATGATCTACGACCGACTAGCCGAAGACGTTAAGCACAAAATCAAACGGCTCGAGAATCCCGATTCACGATTCCTCCAGTACAACTCCCCTCACCCAACCTTAACCGACCACTCACCAATCCTCAGCTTCCCTGATACGCGCGTGACCACACTTCCATCAGGCCTGCGCGTGGCTACTGAGACAAATCTTGCTGCCAAGACATCCACTGTAGGTGTATTCATTGATGCAGGGTCACGGTTTGAGACTGATGAGACTAATGGAACAGCCCATTTTCTGGAGCATATGATTTTTAAGGGGACTGAAAAGCGGACTTCATGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGGCATTTGAATGCTTATACTTCTAGAGAGCAAACTGCGTATTATGCTAAAGTTTTGGATAAGGATGTGCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCCAAGTTTGAAGAGAAAAAAATTGAACGCGAACGTGATGTCATCCTTAGGGAGATGGAGGAGGTTGAAGGTCAAACAGAGGAAGTCATCTTTGACCATTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGA | |||||||||
gi|227572001|gb|GO608294.1|GO608294 NBERO1CH_T3_094_B09_15JUL2006_077 NBERO1CH Nicotiana benthamiana cDNA, mRNA sequence AGTCAAGGATGACTTGCC EST sequence (targeted fragment marked with yellow): AAAAGGCAGTATCCTCATTTCTCCTCCGCTATCACTCGTAAAACTTTCACTCCGCTTGGCTCCCTTTCAATCCTACACCATGGCCACGCGCCACCTTCTCAACCTCACGCGCCGCTCTCGAATCAATCGTTTTTCTCTTCTACCGCCATGTCTAACACTGTCTTCCCGATCCACCACCTCCGTAACCACCTCACCTCCCTCCTCCCCACCCTCCCCACCTCCACCAGACTTCATGATCTACGATCGCTTAGCTGAACAAGTCAAATCAAAGATCAAACGCCTCGAAGACCCTAACCCTAAGTTCCTCCAGTACAATTCCCCGCACCCTACGACAGCGGATCACACCTCAATTCTCTCATCACCGGAGACTAAAATCACCACTCTCCCTAACGGCCTACGTGTCGCTACTGAATCGAACCTGTCGTCTTCAACGGCTACCGTCGGAGTTTGGATCGACGCTGGATCTCGATTTGAGACGGAGGAGAATAACGGTGTCGCGCATTTCCTTGAGCATATGATTTTTAAGGGAACGGAGAAACGGCCTATAAGGGCATTGGAAGAGGAAATTGAGAATATGGGAGGGCATTTGAATGCGTATACTTCTAGGGAACAGACTACGTATTTCGCTAAGGTTTTGGGATCTGATGTGCCAAAGGCGATTGATATACTTGGGGATATTTTGCAGAATTCGCTTTTGGAGGAAGATAAGATTGTTCGGGAGCGTAGTGTGATTCTTCGGGAAATGGAAGAGGTGGAAAACCAACCGGAGGAAGTCATCTTTGACCAGTTACATACTACTGCATTCCAGTACACTCCATTGGGTAGAACTATTCTTGG | |||||||||
gi|120552633|gb|EH371497.1|EH371497 b02_j001_plate_185 j001 Nicotiana benthamiana cDNA 5', mRNA sequence AGTCAAGGATGACTTGCC EST sequence (targeted fragment marked with yellow): GCGCGCTACTCCCAGGAGGTTTATACGGAAGTAGGGCAGGCTATAGTGGCAGCGGCCGTTACCATCCCTATGCCAGGTAGATTATCTTAAGCATTTCCTAGGAGTTGCATTCAGGCTCTTGGTAATGCATCTTTGGCTCAGATTTGAGTAGATATGGGAGCGCTAGCAAGCAGACGTCTAGAAGATTGTAGAACCCTAGTTTGTTCCTGCTTATTATTGTGGGACCTGAGACCCATAGTGAAAATCTCATGATTTGTCTTTAGTTTAGACATTTTCTCCTTTATGAACTATGAATTAGCTAGAACCTTCTCTTTT | |||||||||
gi|120547828|gb|EH366692.1|EH366692 B07_j001_plate_122 j001 Nicotiana benthamiana cDNA 5' similar to unknown function, mRNA sequ AGTCAAGGATGACTTGCC EST sequence (targeted fragment marked with yellow): TTTAAATTTAGGAATTTCAAAATTGTACCCAAAAAAATTGCCAAACATCTACAAAAGTAAATTTCTGTTTTATCTTCCCCTCTGGAAAACCTTAAATAAGCGCCCCTACTCTGAGGACCCAAAGTTCCATATGCCCAATTCTGGCAATTTGCATAATAAAACATGTGGGATGTAATTGTGAATCAAAAATTTTATTGAGCTGAATAGTTATCAAAAAATTAACGTATCAAAATGATCATATGTGACTAACTGATTTGATCTCCAAATGCTCAAATGGTTAAAAAAACGTGCGGAAACAACGGTCTCCCTCCTGGTAAGGCGAGGCTGATTCATGACTGTCTACATGAAGCTGGCTTTCAAATTGGGGAAAGAACAAACCCCCTTAAATAGGGTATCCAAAAACCAACAGTCGAAAGCAAAGGTCCATGCTCAACATGATGGTTTAAATGGAGCGTCATGCTTGACTGGTTCCCCAA | |||||||||