| mature miRNA: ATGTTTGGGAAGCTTTTGGTG species: Nicotiana benthamiana database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|227573472|gb|GO609312.1|GO609312 NBLEL3_JP_009_C02_26JUN2004_012 NBLEL3 Nicotiana benthamiana cDNA, mRNA sequence ATGTTTGGGAAGCTTTTGGTG EST sequence (targeted fragment marked with yellow): TGCCGTTGCTCCATTCCTTAAGTGCAACACCTGCAATAACAATAAAGGATGAAGGAGGAAATTCAACAGAAATCCAATGACCATCCTTTGTTTGGATCTCCAAACCATTTACTTGATTTTGATGGAGTATAGTAATGAAGCCCATGACACAATGAGGTGGAAGACCAATGTTAGGCTCATCGGACTTGGGAACTTCATATTTCATGACACGAACATGGTTACCCTTAGATTTAACGCACGATTCATGATGTTTCTCCACACCATAGCTTGCAAACATCCTGTTTGTCACCATGTTGTCTAGTTCCATCAATTGCTTTGAATGGGAATGAAGTAGTCCACAAAAATAAGTATTCCAGAGGGCCACATGAGATTCGTGAAGCTTTGAACTGATTCAAGATTGGTGGCATTCTCAATTCCCATGCTTTCATAAAGAGGCCGAGTGTCGGATTCTGGTCCAATATAACCAAAATTAGGAATTGTCGAAGTGTTTTTAGTTTTGGTCTCCACAGGTAAATCAAACAACTTCTCCAATGCCTGGAAAACTTGTTTACACTGCTCCATTGAAATTTCTTCATAGATTGCTAAGAAACATCCATAGATTTCAAAAGCTTTTCAAACATCTTGGCATATTGAAATCCAACAACTTGAACTTGGGCTCATGTTTTCTTGGCTAAATCTGATAACAGGAATCACTCTTTGGGATTCCATGGTTATTAAC | |||||||||
gi|39872927|gb|CK291960.1|CK291960 EST754674 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana ATGTTTGGGAAGCTTTTGGTG EST sequence (targeted fragment marked with yellow): CGTCTCTCTCTCCCCCCCTCTCTCCTCTTCACATTCACAATCTCTCTTTCCCTCCCTCTCTCGTCGCCCACCGACGCCGGCACCAGATTCCGGCGAACGTTGTCTCGCCCTAAAATCTTCCCAAATATCCGCCACATTTCGCATTCATTCTTTTTTATTGATTTTCTTCTCTTAGAAAAGATAAAACTGAATAATCAGTTAGGGTTCCCTTCCGTTATCACTCAAAGATCGAACTTTTGGTTGATTGTTTTCCTTGCTATGCGAGAAATTTAGGGTTTCTGGTGCTGCTCCGAAAAAAACTAGTCTCGGGAAGATCTAATAATCCAAGTTTTGTTCACGTTTCTGAAGGATCAAATTCCGTCCTCTTCTTGCTGCTCGGATTTGATCCGCTCACGTAATCTGTTAGGCTTTTTTTCTTTTAAAAAAAATTCCTTTCGTCTCTGACTGATTTTCGATACTACATTATCAAAAAGCCTTGAGCTTTTTTGGAGTAAACAGATAAGAATTTTGAGTAGAGGGAGTTTGTATGGGTGGGATATGTGCAGAATAGAGGGGAAAAAGAGTGAATTGGAGGACAGAGAGGAGAAAAAGAAGATAATGGGTTTCAAAGCAGTGGCTTTAGGTGATAGTCGTGTGGAGAAACTGAAAAGATCAATGATGTCACGGTCTAGAATGAAGTTATGGATGATAAGGGCAACAACTTCGATACTGTTGTGGACTTGTGTGTTTCAATTGATGACTTTAGGGGAGACTTGGGGTCCTAGGGTTTTGAAAGGCTGGCCGTCTTGTTTTTCACAGGAGTCTGCTGCTTCATTTGTTGTCAATTCGTCGCCGGAGGTCCCTGCTAGAGTTCTTCCACCCAGAGGGTTTACA | |||||||||
gi|39864563|gb|CK287736.1|CK287736 EST750458 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana ATGTTTGGGAAGCTTTTGGTG EST sequence (targeted fragment marked with yellow): AAAAGAAAAAAAAAAGCCCTAGAGAAAACCCTGAACCCTTAGAGCCGCAGCAGCCCCAACCCGCCTCCCCCTCCGCCTTCAGTCTAAAAACCAGCCTTCCACACCACCTTTCAGCTGCCAGCCACCCGCCACAAGCTCGCCGGACGTCCGGCAATAATCTTCAACAATGAGCCGCCCACCCCTAAGACTCCGACTGTCGCACCACAACTTTCCCAAAAATCAATCTTCATTCCTTAACTTGAAACACTGATTTCCCTCCAGCCAAGAGACAAAACCAAGAACCCTAGACACATATCCAATTCGCCACAAATAGCAATTTTATTTGTTACCAAAAAGTGCTTGTGAACATACTTTTCCTTCACAGAAAAACCAGTACACTCCAAAATAAAATTAGGAGTACATCGTTGCGGGATTACATTATTGTTCCCATGTTTTCGGAAAACGACAAATCAAGAGATGAAAGTCGTTGGCTTTAACACAAGGGAATGGACTGTATAAAGTGGAGTATTCCGGCGAAATTGGAGGCATGATCGAGGCAGCGAGGTTTTCCGATTGAGGTGTCCATTCGCGGTTTGCTGTCTCCGATTGAAGGCTCCTGCTTGGTCGAGTTAGACATCAAAGGAGGAGAACACTAGGGATTGAAATGAATGGAGCTTCCTCATCTGGTGGTATAAGAGCTGCTTTATCCTATTGTGTGCAGCAAGTACGAAGTTATGATTATCATCACTACCTTTGCCTTCTTGAACTTCCTACAAACATGCGGAAGGCTGCATTTGCGCTCCGAGCTTTCAATGTGGAGACATCCCGAGCTATGGATGTTGCATCTGATCCCAGAATTGGTCTTATGCGCTTGCTGTGGTGGCAAGAAGCTTTGGACAAGATCTATTCCGACCAGGTGATTGAGCATCCAGTAGCTCAGGC | |||||||||
gi|39853628|gb|CK282231.1|CK282231 EST744953 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana ATGTTTGGGAAGCTTTTGGTG EST sequence (targeted fragment marked with yellow): TAGTTTGGTTAACATTGGCGTCTCAATCAGACTAGAATAACCAGAATCCAGCAAAAGCTTCACAAACAGCAGCTGAAGATCATCAAGATTCCAAGCCTGAGGCTACAAATGGGAGCTCTCCGGCTTCTGTGTTTGTAAACTCCGAACCAATTTGGGAGGAGCAAGTCCAAAATGCTATGAAGTTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTCGAGAGAAAGGGTCTCACGAAGGAGGAAATAGACGAAGCCTTTCGTCGAGTTCCAGATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCAAATGAAGATGGGAAGCTGAAGCCTTCATCAACTAGTCCACCACAGGCTGCTTTACAAAATATGCAGCCTGCATCAGCTACACCGAGCAATAGCGTGATCAAAATGGGGTATCTCTCTCATTTCCGTTGGACTCATGAAGTTATTGCTGTAGGTTTACTTGCTGCTTCTGGAGCTGGAACAGCCGTACTCTTCAAGAAATCCATTATTCCTCGATTGAAGTCTTGGATACGCATGGTTGTAATGGATGAAGAAGATGAAAAGATATTGTAAAACCAAGTTAGCAGAAGAAGCTGCTGTTGCTGCGAAAGCTGCTGCAGCCGCTGCTGCAGATGTCGCCCGAGCAAGCCAGAAGATGTTGGCATCAAAATCCGAAGACAAAAGGTATTTTGAGGAGCTGACAAGTCTGTTAAACTACCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAGCCTTGGGAAGTTGGCCAGATTCAAAA | |||||||||
gi|120549934|gb|EH368798.1|EH368798 B03_j001_plate_175 j001 Nicotiana benthamiana cDNA 5' similar to Kinase like protein, mRNA s ATGTTTGGGAAGCTTTTGGTG EST sequence (targeted fragment marked with yellow): GCGCCTACTCGTCGCCTGTAAGATTACAGATTGGTGTTTAAGAAACACCCGAAAACAAGATTTTCTAGAGATCATTCCACATTCTCTTATTGATCTTGTGGACAAGTGTTTAACGTCGAATCCAAGATTGAGGATTAGTGCAGAGGAAGCCCTCCGGCATGAGTTCTTCTCTCCATGCCATGAAGCTTTGAGAAAGCATAGGCTTTATCGTCAAGGGCTCAGCCAAGAGATCCAAGACCCAATATCTACACTTCCCTTACCAGAAAATTCTCAAACATATGGAGTATTGTAAACACAAAGTGCATCTGGATTTTCTATTCCTTCTTTAACCAGTAGTGATGTAAAAATAGCTAACTAATGAATGTAAATCTTTCAGCAAATCCAGAATTTAGTTGTGTATTCATATATTTTACAGTTGTATTCTAGTCGTGCATAGCAACTTAAAGCCATTGTGCATTAACATTTGACAAAAAAAAAAGG | |||||||||