| mature miRNA: TCGGACCAGGCTTCATTCC species: Nicotiana benthamiana database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|227566701|gb|GO603164.1|GO603164 NBERO1CH_T3_034_D05_01AUG2006_041 NBERO1CH Nicotiana benthamiana cDNA, mRNA sequence TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): CTCCCTTGCACCTCTAACCCACCCGATTTCATATCCAAATCCACCACCAAACCTTCTGAAATATACAAACAAGTGCACCCCAATCTGCAAAAAGATGCACATCAACTTCTGTATTTTCAATTCTAATCATTCTATTAGTTCCTAGCTTTTCTAATTTCAGAGTTTGAACCTGGCCCACGTTTTCTCTTTCTTCTAATTGGATTTGTAATTGTATATGATCGAAGATGTATAGCAATTTCAAGGAGCAAGCGATCGAGTACGTGAGGCAAGCAGTGCAGGAAGACAACGCTGGTAACTATGCGAAAGCATTCCCTCTTTACATGAACGCTTTGGAGTACTTCAAAACCCACTTAAAGTACGAGAAAAACCCTAAGATTAAGGAAGCGATTACCCAGAAATTTACCGAGTATTTGCGCCGGGCGGAGGAGATCCGAGCTGTGTTGGATGAGGGTGGGACCGGGCCTGGTCCGAATGGAGGGGATGCGGCTGTGGCGACAAGGCCCAAGACGAAGACGAAACCCAAGGATGGAGAAGATGGGGAGGATCCTGAACAGTCCAAGTTGAGGGCTGGGCTTAACTCCGCGATTGTTAGGGAGAAACCTAATATTAAGTGGAATGATGTTGCTGGGTTGGAAAGTGCTAAGCAAGCTTTGCAGGAAGCTGTTATTTTGCCTGTCAAGTTT | |||||||||
gi|39873268|gb|CK292130.1|CK292130 EST754844 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): TTCCCTCCAACCAAACCCTTTGTCTTGTTCTCTCTAAAAGTACCTCATAGGCATCCCCTTTATAGCCTCTTTCTAAACCATGTTCAGTCAAGTTGACAAAACCAGGATGGAGGAGGAAACTAAGGTACCACTTCTCCTCTCAAAACATGAAATTCCAAAATATTGGCCATCTGATGAAGATGACATCCTCCCCATTAATGGTATCAGAAACTTTTTCCGGGAGTTCAACTATGAGTCCAAGAAACTTTGGTACCTGGCCGGACCGGCGATATTCACCTCCCTTTGCCAGTACTCTTTGGGCGCTGTCACTCAACTCTTTGCTGGCCATGTTGGAACCCTTCAACTTGCCGCTGTCTCCGTTGAGAACTCGGTTATTATGGGAATCGCAGAGGGCGTTCTGTTGGGTATGGGAAGCGCATTGGAGACGTTATGTGGGCAATCATATGGAGCAAAAGAGCTAAATATGTTAGGGATTTACATGCAAAGATCATGGATAATCCTCAATACTGCAGCAATACTATTGACTCTAATCAACATATTCGCCACCCAAATTCTAATGTTAATCGGTCAGCCCGAAAACATCTCAAGGTGGGCGGGGAAATTCGCGCTGTGGATGATACCACAAGTGTTTTCATTTGCTTTGGAATTCCCAATTATGAAGTTTTTGCAAGCTCAGAGCAAGATAATGGTCATGGCTGTTATAGCCGGGGTTGCATTGTTTTTGCATACTTTTTTTACTTGGCTTTTGATGCTGAAGCTAGGCTGGGGTTTGCCGGCCGGCGCGGCGGTTCTCAACGGCTCGTGGTGGTTCATGGTGATCGGAAAACTTGTGTATATTTTTTGGGGGAGTTGTGGTGAAGCTTGGTCTGGATTTTCTGGGAAAGGCTTTCATCATCTCTGGGAATTTCTTAGATTATCCCTTGCATCTGGTATAATGATTTGCTTAGAATA | |||||||||
gi|39875359|gb|CK293192.1|CK293192 EST755906 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): GAAATATCACTGGTGGTTAGTTATTTATTTATCTGGTTCGGAATTACACCATCTACTGTAATGCTCATTAACACATCTATTGTGGACAAAGTCTTCGTTTATTATAAACGATTATAGTCGCGATCCCATCTGATCACAATCACACACTTCACTCATTTAACTTTATTCATAGCCCTGGTCCCTGAAGGGATTCAACAAAACAGACCATAAAATTACATAGTATCGACTAAAAGTCCGTTTCCAAAAGACCTCTGGTTGCCGCAATCAAGATTGTCACCAGGACTAACTCCAAGAATACTGCAATACCTTCTGTAAAACCCAACGCGATCCTGGACCCTTGAGTCAGTGCCATGACCACATTCCAGGCCACCGTTGATGATGTTCGTGATGACACCAAATCCAGGGAGACGATTGGCTGCGCGGTCAGCAGACGATGGTTGCCATCTTCCGATGATGACATCGTGGCAAGAAGGTTTTGGTGATTGAGGGGTCATCCAAAACCAGAGAGCTGACTTAAATGAGATAACTGGATCTGTGGCCACTAAATCAGGATTGTTTAGGAGGTCCACTCCTATGGCTCTTCCACAAGGTCCGTAGTTATAGTTGTGTGAAATTTGGATGGGGCCTCGTCCGAAATATTTGCGACCAGGAGCACAAGGCCACTGACCACTTGGTGTACAGTAGTCGCCGGGGCTACCTCGTTCTCTAAGCCAGCAATAACCCCATGCATATGGACCATCTGGTGCTGTTGCCCATCCTCCGGTCGTTTCATGGGAGGTTTGAGCAAAGAAAGCCGCGATTTCT | |||||||||
gi|227569746|gb|GO607183.1|GO607183 NBERO1CH_T3_082_A02_03AUG2006_016 NBERO1CH Nicotiana benthamiana cDNA, mRNA sequence TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): ACGCTTGCAACAAAAGATACGAGTTGTGAATCAGTGGTGACGAGTGGTCAACACCACTTGACATCTCAGCATCCGCCAAGGGATGCTAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAACAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCATTGCTATTTCTCATGGTTGCACGGGCGTGGCAGCACGAGCCTGTGGCCTGGTTGGTCTAGAGCCGACGAGGGTTGCTGAAATCCTTAAGGATTGCCCCTCTTGGTTTCGTGACTGCCGGGCCGTTGATGTTCTCAATGTGCTGCCTACTGCCAATGGTGGAACCATTGAACTTCTTTACATGCAGCTTTATGCACCAACGACGCTGGCACCTGCCCGTGACTTCTGGCTGTTGCGGTATACAACTGTTATGGATGATGGCAGTCTCGTGGTGTGTGA | |||||||||
gi|39883902|gb|CK297477.1|CK297477 EST760191 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): GAAATTCCAAAATATTGGCCATCTGATGAAGATGACATCCTCCCCATTAATGGTATCAGAAACTTTTTCCGGGAGTTCAACTATGAGTCCAAGAAACTTTGGTACCTGGCCGGACCGGCGATATTCACCTCCCTTTGCCAGTACTCTTTGGGCGCTGTCACTCAACTCTTTGCTGGCCATGTTGGAACCCTTCAACTTGCCGCTGTCTCCGTTGAGAACTCGGTTATTATGGGAATCGCAGAGGGCGTTCTGTTGGGTATGGGAAGCGCATTGGAGACGTTATGTGGGCAATCATATGGAGCAAAAGAGCTAAATATGTTAGGGATTTACATGCAAAGATCATGGATAATCCTCAATACTGCAGCAATACTATTGACTCTAATCAACATATTCGCCACCCAAATTCTAATGTTAATCGGTCAGCCCGAAAACATCTCAAGGTGGGCGGGGAAATTCGCGCTGTGGATGATACCACAAGTGTTTTCATTTGCTTTGGAATTCCCAATTATGAAGTTTTTGCAAGCTCAGAGCAAGATAATGGTCATGGCTGTTATAGCCGGGGTTGCATTGTTTTTGCATACTTTTTTTACTTGGCTTTTGATGCTGAAGCTAGGCTGGGGTTTGCCGGCCGGCGCGGCGGTTCTCAACGGCTCGTGGTGGTTCATGGTGATCGGAAAACTTGTGTATATTTTTTGGGGGAGTTGTGGTGAAGCTTGGTCTGGATTTTCTTGGAAGGCCTTTCATCATCTCTGGGAATTTGTTAGATTATCCCTTGCATCTGGTATAATGATTTGCTTAGAATATTGGTACTTTATGTCGCTCATTCTCTCTGCCGGATACTTAAAGAATGCAG | |||||||||
gi|39866370|gb|CK288648.1|CK288648 EST751370 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): ACCAAACCCTTTGTCTTGTTCTCTCTAAAAGTACCTCATAGGCATCCCCTTTATAGCCTCTTTCTAAACCATGTTCAGTCAAGTTGACAAAACCAGGATGGAGGAGGAAACTAAGGTACCACTTCTCCTCTCAAAACATGAAATTCCAAAATATTGGCCATCTGATGAAGATGACATCCTCCCCATTAATGGTATCAGAAACTTTTTCCGGGAGTTCAACTATGAGTCCAAGAAACTTTGGTACCTGGCCGGACCGGCGATATTCACCTCCCTTTGCCAGTACTCTTTGGGCGCTGTCACTCAACTCTTTGCTGGCCATGTTGGAACCCTTCAACTTGCCGCTGTCTCCGTTGAGAACTCGGTTATTATGGGAATCGCAGAGGGCGTTCTGTTGGGTATGGGAAGCGCATTGGAGACGTTATGTGGGCAATCATATGGAGCAAAAGAGCTAAATATGTTAGGGATTTACATGCAAAGATCATGGATAATCCTCAATACTGCAGCAATACTATTGACTCTAATCAACATATTCGCCACCCAAATTCTAATGTTAATCGGTCAGCCCGAAAACATCTCAAGGTGGGCGGGGAAATTCGCGCTGTGGATGATACCACAAGTGTTTTCATTTGCTTTGGAATTCCCAATTATGAAGTTTTTGCAAGCTCAGAGCAAGATAATGGTCATGGCTGTTATAGCCGGGGTTGCATTGTTTTTGCATACTTTTTTTACTTGGCTTTTGATGCTGAAGCTAGGCTGGGGTTTGCCGGCCGGCGCGGCGGTTCTCAACGGCTCGTGGTGGTTCATGGTGATCGGAAAACTTGTGTATATTTTTTGGGGGAGTTGTGGTGAAGCTTGGTCTGGATTTTCTTGGGAGGGCTTTCATCATCTCT | |||||||||
gi|39880657|gb|CK295854.1|CK295854 EST758568 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): CTCCTCTCAAAACATGAAATTCCAAAATATTGGCCATCTGATGAAGATGACATCCTCCCCATTAATGGTATCAGAAACTTTTTCCGGGAGTTCAACTATGAGTCCAAGAAACTTTGGTACCTGGCCGGACCGGCGATATTCACCTCCCTTTGCCAGTACTCTTTGGGCGCTGTCACTCAACTCTTTGCTGGCCATGTTGGAACCCTTCAACTTGCCGCTGTCTCCGTTGAGAACTCGGTTATTATGGGAATCGCAGAGGGCGTTCTGGTAAATAAATCTATATTATTTGGCTTTATTAATTTTATCCTCAAGAAAATAATTTGGATATTGTGGTTGTAATCAGTTGGGTATGGGAAGCGCATTGGAGACGTTATGTGGGCAATCATATGGAGCAAAAGAGCTAAATATGTTAGGGATTTACATGCAAAGATCATGGATAATCCTCAATACTGCAGCAATACTATTGACTCTAATCAACATATTCGCCACCCAAATTCTAATGTTAATCGGTCAGCCCGAAAACATCTCAAGGTGGGCGGGGAAATTCGCGCTGTGGATGATACCACAAGTGTTTTCATTTGCTTTGGAATTCCCAATTATGAAGTTTTTGCAAGCTCAGAGCAAGATAATGGTCATGGCTGTTATAGCCGGGGTTGCATTGTTTTTGCATACTTTTTTTACTTGGCTTTTGATGCTGAAGCTAGGCTGGGGTTTGCCGGCCGGCGCGGCGGTTCTCAACGGCTCGTGGTGGTTCATGGTGATCGGAAAACTTGTGTATATTTTTTGGGGGAGTTGTGGTGAAGCTTGGTCTGGATTTTCTTGGGAGGCCTTTCATCATCTCTGGGGATTTGGTAGATTATCCCTTGCATCTGGTATAATGATTTGCTTAGAATATTGGTACTTTATGTCGCTCATTCTCTCT | |||||||||