miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGACAGAAGAGAGTGAGCACA
species: Nicotiana langsdorffii x Nicotiana sanderae
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|94465085|gb|EB700960.1|EB700960 NecGex_226A10 Ornamental tobacco (LxS8) Stage 6 Floral Nectary subtracted cDNA library Nicoti

TGACAGAAGAGAGTGAGCACA
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ACTGTCTTCTCTCTCTCGT-T

EST sequence (targeted fragment marked with yellow):
ACCATAGGAGGCATAAAGTCTGTGAATACCATGCAAAGGCTCAAGTCGTTGTCGTCGCCGGACTCCGGCAACGCTTCTGTCAACAATGCAGCCGATTTCATGAGCTGACGGAATTTGATGAATCAAAAAGAAGTTGCCGAAGGCGTTTGGCTGGACACAACGAAAGGCGAAGAAAGATGAGCTCTTCATCATCTGCAGTAGAGTCTCAAATTGCTGAAATTAAAGTTCAAGTAGAAAAGGGACAGTGCAACTCAATAATAAGGACATTAACATGATGTGTGGTCAAGTAAATGACAAGGGAAGAATTCAGATTTCAATCCAAGAAAATTCCACTTTCAAAAATTTCCACCTCCGTTGAAGAAATGCCTGCATATTACTTAATTGCTCTCTCTCTTCTGTCATTCTCTCCAACTTCTATTCCTGAAATAATCAGCACTAGAAACAGACTATCAATTATTATGATGATGTATTAAATAGTATTAAGAAAAAGCAAGATCATATGCTTGTGGAGTAGTTGGGTAGCCCAGT