| mature miRNA: CCAACATGGTATCAGAGCTCG species: Nicotiana tabacum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|156674762|gb|AM801320.1|AM801320 AM801320 COL, cold overnight library Nicotiana tabacum cDNA clone nt006209025, mRNA sequence CCAACATGGTATCAGAGCTCG EST sequence (targeted fragment marked with yellow): AAAGCTCTGATACCATTTTGGGACCCGGCACACAATGTCTTCCACTTCTCCGACTTTAAATTGACCCCTACACTGGAGGAAATAGCAGGTTACGCTAGTTTTGACGGGAATCTCAGGCGCCAATATCCGGTAGCACCTAGAATTGTAACCTCCCATAAGTTTTTGGACCTTTTAAGAATTAACCGGCAGGTTAAAGATGAAAATTTGGTCAAAGGATTCTGTACACTCCACTTCTTATATAGCCGGTATGGAGACCCCCGTGGATTTGAGGCTCCAGACACTGGTTTAAGCCATCAGAGAAAGAAAGACAAGTGGGAAGCCCGTAGGGGTTTAGCCTTCGTGGTTGCATTCTTAGGCACACTGATATGCCCAAGGAGTAATGGACACATAGAACTGGGACTTGCAGGAATGGCTGACTTTATGGTTAAG | |||||||||
gi|156646318|gb|AM840168.1|AM840168 AM840168 COL, cold overnight library Nicotiana tabacum cDNA clone nt006202088, mRNA sequence CCAACATGGTATCAGAGCTCG EST sequence (targeted fragment marked with yellow): TATCTACTCTGGTGGCTCTGATACCATGTTAGTTGCCATGGGATCTGAAGGTTGAGCTCAAAGAAGAAGACATGCAAGAGAAGGCAACACTCAGAGGATGAGAGAAAACAGAATCTGTTATTATGAGAAAAAAATGATACAACCGTGTATCTATAAAGCTACAGTATAACTACCTTCTAACACCGTACTAACTAACTTACTTTTAACTACAATCCACTAGTTAAATTTCTAGGTATAATTAACTTATCAGCTTGCCTTATTAACTCCAGTCAACTATTATATGAAAGTATATTTCCACCACATATATATCTCTTTTCTCGTTTCGTGCGTAATTATACAACTAAAATACATTCATCCATCGTCAAATTCATCTCAAGGAAGAACTATTCAATTTTATAGATGCATGTAAAGAGTAATAACCCAAAAAAAAAAAATTATATGAGCAAAGAGTTGTAAGAACATGAGGTAGTAGTGGCTAATTAATCTGCATACAAATAATGGAACAACTGATCTTAATAGTTACACAAAAAATTAGGACAACTAATCTCAAACATAGAAGCTACTAATACG | |||||||||
gi|190137810|gb|FG638454.1|FG638454 TT-48_I10 Samsun trichome library Nicotiana tabacum cDNA, mRNA sequence CCAACATGGTATCAGAGCTCG EST sequence (targeted fragment marked with yellow): CAATTCAGCAACTAGCAGATACAATTGCTGGGCCATTTGTTTACAGTGTGATGACATTATCAGCTGCAACATTTGGGTTCTGGTATTATGTTGGATCACACATCTTCCCAGATGTTTTACTGAATGATATTGCCGGACCAGAAGGAGATCCTTTGCTTCTGAGCCTGAAACTTGCTGTAGATGTATTGGTAGTCTCCTGCCCTTGCGCTTTAGGCCTTGCAACACCAACTGCAATTCTAGTTGGCACCTCACTAGGAGCAAGACAAGGGCTTCTTATTAGAGGAGGAGATGTACTGGAACGCTTGGCAAGCGTGGATCATGTCATGCTGGACAAGACAGGAACTCTGACTGAAGGAAAACCTGCTGTCTCTGCTGTAGCGTCCTTGGTTCATGAGGAATTAGAGATTCTTCAAATAGCTGCTGCAGTGGAGAAAACAGCATCTCACCCCATTGCTCATGCTATTATAACCAAAGCAGAATCGTTGGATTTGAGTATCCCTGTCACACGTGGACAATTAGCTGAACCTGGCTCTGGAACCATGGCAGAAGTAAATGGGCTCTTGGTTGCAATTGGAAAGCTGAAATGGGTTCAAGAACGTTTCCAGCAAAAAGCAGACCTTTCTGATTTGAGGAGTCTTGAGCAATCTGTGATGCATAAATCATTAGAGGACAGGCAATCATCTAACCATTCAACCACAGTTGTATACGTTGGTCGGGNNNGNGAGAGTGTGATTGGGGCTATTGCGATCTCTGATAAATTACGCGAGGATGCTGAGTCTACCATAAGAAGGCTTCAGGACAAGGGAATT | |||||||||
gi|156675380|gb|AM806348.1|AM806348 AM806348 DL, diurnal library Nicotiana tabacum cDNA clone nt005120089, mRNA sequence CCAACATGGTATCAGAGCTCG EST sequence (targeted fragment marked with yellow): AATAAGTGACGGTGAGACTTGAACCTAGGACCTCTATCTAGCTTTGTTACCATGTTAGATTGTATCAACAATAAAAAT | |||||||||
gi|156700499|gb|AM795512.1|AM795512 AM795512 COL, cold overnight library Nicotiana tabacum cDNA clone nt006052050, mRNA sequence CCAACATGGTATCAGAGCTCG EST sequence (targeted fragment marked with yellow): CGCTATCTACTCTGGTGGCTCTGATACCATGTTAGTTGCCATGGATCTGAAGGTTGAGCTCAAAGAAGAAGACATGCAAGAGAAGGCAACACTCAGAGGATGAGAGAAAACAGAATCTGTTATTATGAGAAAAAAATGATACAACCGTGTATCTATAAAGCTACAGTATAACTACCTTCTAACACCGTACTAACTAACTTACTTTTAACTACAATCCACAGTTAAATTTCTAGGTATAATTAACTTATCAGCTTGCTTTATTAACTCCAGTCAACTATTATATGAAAGTATATTTCCACCACATATATATCTCTTTTCTCGTTTCGTGCGTAATTATACAACTAAAATACATTCATCCATCGTCAAATTCATCACAAGGAAGAACTGTTCAATTGTATAGATGCATGTAAAGAGTAATAACCCAAAAAAAAAAAATTATATGAGCAAAGAGTTGTAAGAACATGAGGTAGTAGTGGCTAATTAATCCGCATACAAATAATGGAACAACTGATCTTAATAGTTACACAAAAAATTAGGACAACTAATCTCAAACATAGAAGCTACTAATACGAG | |||||||||
gi|190775269|gb|FG177021.1|FG177021 AGN_RNC119xm22r1.ab1 AGN_RNC Nicotiana tabacum cDNA 3', mRNA sequence CCAACATGGTATCAGAGCTCG EST sequence (targeted fragment marked with yellow): ATGAGATGCCAGACCATATAAGGAGATACACCCATCAGGATACTATGTGGGACTAACACTCCCTCGCACGCTAGGACTGCACAATTGAAGCGTGCAACACAACAACAGGGATAGATGAGTCTGGATCTGATACCATGTTAGGAAATGAACCTTGGGTCTAACTCAACTCTAAAAGTTAGCTCATGAGGGGAGGATTACCCCGGACCACAATGAGGAGGTCACAGCTGACTTCGTCAATTAATATGGGACTTAACACTATGAAAGGTTTAGACTGGAAAAATGTCCAACTAAGAAACTCATTCAGTTGATGAACCTAGAAGGATTACTATACTTGAGAAACTAAGATCTCACTAGTTTATCTTGCATACGAAATTTTTATATATGGCCTTACCCATCCACATTAGGGCTAATATTTCTGCAAATAACCACAAATTTGACGCTAAACAGGTCACATGTTTATAGCTAAAGCAAAAAACAACCTATATAAACATCATAAAGCTTCTTGATTCTCATTAAACTATGCAAGAGGTAAAGGGTAGCCCGGTGCACAAAGCATCCTGTGTTTACGCAGGGTCCGGCGAAGATCTGCGCCTCAAGGGTGTGATGTAGACAGTCTACCCTAATGCAAGCATTAGTGGTTGCTTCCACGGCTCGAACCCGTATCTATTGTCACATGGAGACAACTTTATCGTTGCAAGAGGTACTTTTGTTTTTTATATGTTTGACAGTTACCTCTATCCGTCTCTTCTCCCAAAAAATGGTTTAAGAAATTATTTACTAAAT | |||||||||
gi|254628891|gb|FS420221.1|FS420221 FS420221 normalized full-length tobacco cDNA library Nicotiana tabacum cDNA clone TBK02GR005 CCAACATGGTATCAGAGC-TCG EST sequence (targeted fragment marked with yellow): GGAATTCTGGGACCTAAATCCAAAAAGAAAACTTCTACCATCTAAACCATTAATTACTCACTTAGTTAAGAAGCAGGAGGTCTTTGAATTACAAAGGAAAACACACACACACATACACACCTGGTCGGAAATACAGCAGAAACAGTGACAGTACATGAGAGTTTTCCAGTCATCAAGCCGTTGATGTCGTCATCGAGGTTCCGCTCGTCGTTCTTTGTTCGTTTTCAGATTTGTTCTCTTCCATCTGAAGCAATATTTTTGATGAGCACAAGTGAAAACAAACCCTTCACCGTCTTTAGCGAGGTCCCTCTCCAGTTCCATATGTGGTGGGGCGATTTGGGAAAAAACAGCAAAGAAATAGTGGTCGGAGTCTTGGGGGGTCTCATCAGTCTACTAAATGTCAAGGCAAGGACGAATGTCATCGAGGCTTTGATACCATTTTGGGACCCGACCCGAAATGTATTTCGCTTTGCGGATTTTGAGCTTACACCCACATTGGAGGAAGTAGCAGGTTATGTGGGTATGAATGGGAATCTGAGAAGTCAGTATCTGTTGTCACCAAGGCCGGTATCGCCACACCGATTTCTGGA | |||||||||
gi|156686393|gb|AM825414.1|AM825414 AM825414 COL, cold overnight library Nicotiana tabacum cDNA clone nt006043041, mRNA sequence CCAACATGGTATCAGAGCTCG EST sequence (targeted fragment marked with yellow): CATGCGGCCGCTGTACCATTAAAAATTTCCTAGATCCCCAATTTATAACAAGCGCTTCACGTCGCATAAGATTGAGAAGGAAGGAAATGAAGGCATAAGCCTTAAAGGAATCAAATCGCACGATGAGGAATCAAAAAGGAAAGTATTCCTAACAGCCCTATAGCCTCTCAAAGATAGGTACAGATGCCTCCGTACCGATCCGCAAGACTCTACTAGACTTGCTCATGACTCGTGAGACCTACGTGAACCTAGTGCTCTGATACCATGTTGTCACGACCCAAAATCCAAAAAAGTCCGTGATGGCGCCGGACACCACTGTCAGACAAGCCAACCATAATCAATTAACTTAATTACCCATTTTAGTAATTTTTGAAATAACAATTTCTTCAATGAACCAGTAAAGATAAAACTCATAGAGTAAATGATAAATATTTTTAGCAATAAAATTTCTAAACAATTCACAAACCATTCCCAAAACTCGGTGTCACAAGTGCATGAGCATTTACTAGGG | |||||||||
gi|190844655|gb|FG185820.1|FG185820 AGN_PNL210af1_d2.trimmed.seq AGN_PNL Nicotiana tabacum cDNA 5', mRNA sequence CCAACATGGTATCAGAGCTCG EST sequence (targeted fragment marked with yellow): TCCCGGGACTTTGCACCTTCCCTCAATAAGAACAAATAATAAATATTCATTCCAACACCCTTCTCTTTCTTCTTTCTATAATTCGGAAGTCAGAGCGCCTGTAACGTAATCATGATTTGACAGATATCGAGTTTGAGTTGGTGGGAAGGGTGTTCGTGAAAAACGTTAGTGAAAAGAACCAATAATTAATTTGGTACGTTCATAATATTAATTATAATACTATACATATATTTATTTTTAGTATATAATATAAAGGAGGGGAGGCTAAAGATAAAAAAGACATGGAGTCATCACCAAAAACACCAGACAGCAAAGGAGCAGCAAGTGCAACAAAATCATTAATGGACAACCTTTTGGGACTTCTGAGAATCAAAATAAAGAGAGGAGTTAACCTTGCTGTTCGTGATGTTCGAACCAGTGATCCTTATTGTGTTGTCAAGATGGGTAAAAAACAGAAACTGAAGACGCGAGTTATAAAGAAGGATATTAATCCTGAGTGGAATGAAGAATTGACCCTTTCTGTTTCTGATCCCACTCTTCCTGTTAAGCTGGGTGGCGGTGGGGCCTCGAACTCAGGACCTCTGCTCTGATACCATGTTGAAATGTGTGACTATCTCGTCTAAAAGCTTAAGCTGTTAGATAGAACACACTATATCTCCAACACGCTCCCTCACGTGCGGACTTGATTCTTTTTTATGAGCCAAACTGTTTATGATCACGACACGTTCAGCATGGACGACAAAATGGGAGATGCAGAATTTGA | |||||||||
gi|190802690|gb|FG163538.1|FG163538 AGN_RNC014xo13r1.ab1 AGN_RNC Nicotiana tabacum cDNA 3', mRNA sequence CCAACATGGTATCAGAGCTCG EST sequence (targeted fragment marked with yellow): TTCTTAATGCTCGAATTAATCTTTGATACAGTAGAAACGATGCCTGAAAAGGTGTGTGCACATGCTATAAATCAGCGATGATGACAGAAATGAAGGTGAATGTGATGGCAGTGAGAAGCTCCCGAGGAGTCTCGTCGTCCAGCCAACTCCATTGTAGAAGCATATAGATTGCTGACTCTTCTGTGAAGGTTCAATTATTAATCTATTTTATGCTGAAATATGCTATGGAGATTTTACTTTCAGCATCTAGTGTCATCACGGCATATTACTTTAGCTGGTCAACGAGCACTGTCGCAATTTTTCTTGCATGTCTGGGCCTCACAGTTCTTCCAGTAAATGTTGTTGTTGGGAGCTACATAAGTAACATCTTTCAGGACAGGCAACTTTTGCTGGCATCTGAAATCATGGTTTGTCTTGGTATACTCCTGAGCTTTAATGTTATAATCCCGTATTCAGTACCACAGTATGTCTGCTCAGGCCTCCTAATGTTTGTATCTGCTGAAGTATTAGAAGGTGTAAATTTATCTCTTCTCTCTCGAGTAATGTCATCAAGGCTTTCCCGGGGAACCTACAATGGAGGTCTCTTGTCCACAGAAGCTGGCACAATTGCTCGGGTGATTGCTGATGTAACTATAACTCTTGGTGGATATTTAGGGCAGAGCAGGCTCTTGAATGTTACTCTTCTTCCTTCACTTTTGATATGCATAGCTTGCATTTTTGCAACATGTCGTACCTATAATTCTCTTTACTGATTCACAATCTTGTATGCATACAAATTACAACGATATACGACTATTGTTTTTCCTTCTCTTTATGGTTTCTGAGTTGATTTGCTTGTTAAATTGAGGGATTTGAAACTTCCACTAACAAGATGGTGAGGGTACATACAAAGTGAGTTGACTCTCATACCATGTTGGATGTAC | |||||||||
gi|156668732|gb|AM783817.1|AM783817 AM783817 seedling library, SL Nicotiana tabacum cDNA clone nt002152030, mRNA sequence CCAACATGGTATCAGAGCTCG EST sequence (targeted fragment marked with yellow): TAGGCATGATATGCGCGGGCATGGACCATAAAGGTAGGCCAACCATGAGACAAGTAGTGAAATTCTTTGAAAGGAACAGTGAGGTTGATGAATCTGAAGCTGAGGATATGGATGTTTACCTTCTGGAGAGTTTGAGATCTAATACCATGTTGTCCAATTTTTCCTTAAGTTTGAGCCATGGTTCACACCCAACATTTGAAGAAATTAGAGAAGGTTTGTCTTCTTCTATGTCTATTTCTTGGACAAATTCTTTGGTGGAAGGTAGGTGAATTTTACACATCTCTGCAGGCTGCAAAGAGGAATGGTTGGTTTTTGATCATCACTCTGCTTGAACTCTTGGTACCTGCATTTCCAATACTTTCAGGGCCTAGCATTACTTGAAATGGTAGTGCTGCTTCATGAACATATTTATAGGTTGGCTAAGGAAAAAGGGTTGGTTTTGAGATATACATGTATTAGTCATTTCTTTTTTTATAC | |||||||||