| mature miRNA: GCAAGAGAGAGAGCACAACAA species: Nuphar advena database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|149368386|gb|ES731319.1|ES731319 Nad03b_30_C01_C005.g1 Nuphar advena flower bud library (Wash U) Nuphar advena cDNA clone 122 GCAAGAGAGAGAGCACAACAA EST sequence (targeted fragment marked with yellow): ATCCGACCAGAGCTTGCAAAGAGTTTCAGACTCTGTTTGTGCTCTCTCTCTTCTGTCATCACAATCTTGGAGCTCATCCACACAGTCATCTGGAATGGCAATGCCTCCAGCTTTGATGATCCAAGGAGGGCACGTCCATTACAACACAGATCAATTTCCAGACAAGCTTTTAGCCATCAGTTCACAGATATCCTCTAGTGTGGCTTCCAGCAGGTTTTCTTCATCAGGAATTAACTCTGGGGAAGACCACATTAGCACTGTAAAGGTTACTGATATTAGTGACTCTATCGACTTTGGAGAAGTTCACACTGATGGCATGCTTCAAAGATCTAACTTCCTGCCATCCAAGGATGAACATACCATTGATTTGCTTCAACTTTCTTCACTGCTGCAGAATGCAGAGCATCACAGACAGGTTGAGCAAGAGCGGCAGGGAAATGAGGCATTTCACTGGAATCATGTTGCATAATCAACAATGTGGCCCATTTTCCAATTGGTATGAATGTCATGTCCCTTGCAACAAACAGTCATCCTGCAACAGCTTTGCTATCAATTGTTAATAATGAACAATACTAGCTTGGGCAGGTCACTATTTAAGTTTCATTCAGTAAATACTCCATTTTGGATATTATCTTTG | |||||||||
gi|149371474|gb|ES732375.1|ES732375 Nad03b_39_F07_C005.g1 Nuphar advena flower bud library (Wash U) Nuphar advena cDNA clone 122 GCAAGAGAGAGAGCACAACAA EST sequence (targeted fragment marked with yellow): GGCAGGGTGATCCTGCTGCTGCTGATATTTTATCTCCAGGAGTCCATCCATTTTTACAAGTTTGGTCTGGTGGGTCTAGCTTTTCCAGCCAGGAGATTTCACCAGGCGACTGTTTCTCAGGAGTCTCTGGCCCCGGTTGTGCTCTCTCTCTTCTGTCACCCCAACTATTGGGCTCAAAAAGCCGAGCTTCAGGCCTTATTTCTGTAAACCACTTGTTGAATGATGAAGAGCCTTCCATGACTCAACCTCCTGTCGCCCAACCCTGCTCTGGTGTCAATGCTGACAAGCTGCTTACTGTTTCTTCACAGTGGTCTGCACCACTTCCTCCATTTTCTGCATACTCTACTGCTGCTATACTTGAACCACTGTCGCCTGCTAGAACCAGAGCTAGTGGATGGAGTTTCAGAAACAATGAGGCCTCACATTCTCATGACATCCAATCCGAAATGGAGTTGAAGCAAGTATCTGAGTTTCATGGCAGCCAGTTTCCTGGTGAGCTCNGGGTTGGTGCCTCAAGGAGGCAGGCGGTTGATGGATGCTGGAAACTTGAGGTCATTTGGACCTTCAGACCACAATTCACATTGGGGTCTGGTAGGTTGGTTCTATCCACGGAGAGGTTTAATTCCTCTTTTTCGGGTTTTTGATCCTTATTTTGCAGAATCCTGTGATT | |||||||||
gi|164500736|gb|FD383490.1|FD383490 Nad03b_97_G10_C005.g1 Nuphar advena flower bud library (Wash U) Nuphar advena cDNA clone 122 GCAAGAGAGAGAGCACAACAA EST sequence (targeted fragment marked with yellow): ACAAAGGTTCTGCCAGCAGTGTAGCAGATTTCATCAGCTCTCTGAATTTGACCAAGGAAAGCGCAGTTGCCGCAGGCGCCTGGCTGGTCATAATGCACGTCGTAGGAAGCCACCACACAGTTCAATATCATCCCACTATGGACGGTTTCCTTCCCTTCTTTATGAGGACAGCAGAATTGGAGGGCTCTTAACAGACTTCACCTTCCCAAGGCATGCTGGGAAAGATGTTTGGTCAACCATTAGAGCCAGTGAACGTGTACCAAGCCAAGGCCAAGCTACCGAAAAATATGTTCCACATGTCTGGCAGGGTGATCCTGCTGCTGCTGATATTTTGTCTCCAGGAGTTCATCCATTTTTACAAGTTTCTTCTGGTGGGTCCAGCTTTTCCAGCCAGGAGATTTCACCAGGCAACTGTTTCTCAGGAGTCTCTGACCCCGGTTGTGCTCTCTCTCTTCTGTCACCCCAACTATTGGGATCAAAAGGCCGAGCTTCAGGCCTTATTTCTGTAAACCACTTGTTGAATGGTGAAGAGGCTTCCATGACTCAACCTCCTGGCGCCCAACCCTGCTCTGGTGTCAATGCTGACAAGCTACTTGCTGTTTCTTCACAGTGGTCTGCACCATTTCCTCCATTTTCATCATACTCTCCAACTGCTATACTTGAACCACTATCACCTGCTAG | |||||||||
gi|164503333|gb|FD385245.1|FD385245 Nad03b_126_D09_C005.g1 Nuphar advena flower bud library (Wash U) Nuphar advena cDNA clone 12 GCAAGAGAGAGAGCACAACAA EST sequence (targeted fragment marked with yellow): CTCAGAAATTGCATTCCCACCTCCCAATTCGACGATGCCCTTGACGGGATCGCGTCGTCGTATTGCAATCTTAACCATCATCAGCATCACCGGGTGACGATCATGGAGGATCTGACAGAGTTGCCTGCTGCCCTGGTAGCAACTTCATACGGCGGCGGCCCCCGCTTCCCTCAGAGGAAGAAATCCATGGCAGCTTCTTCCAGGACGGTCTTTTTCGTCCTCGAACCACCACTACCACAAGCACCTTCACCAACGGCATTCCAATCATTAGAAGGTGACCAACTTCCCTTATCATGAAGGACTGCCCTCTTTTCCCCTTTTTGTTATTAGTTGTCATTCGTTTTATCCCTGTCTGCAATGGTGCTTCTTTCGTGGATTTAGTACTCTCTCTCCTCTGTTCTGAATTGTAACGCTCTGATCGTCATTTTGTAACATATGATCCTCCACTTTTATATGCTGCAAACATGTTCTTGTTGTTTTCTCTTTTTTGAGAAAAAAATGGGGAACACATTGTTGATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|149380386|gb|ES735759.1|ES735759 Nad03b_80_G01_C005.b1 Nuphar advena flower bud library (Wash U) Nuphar advena cDNA clone 122 GCAAGAGAGAGAGCACAACAA EST sequence (targeted fragment marked with yellow): GTATTTTTCATGGCCACCATGGGCATTTTTGTGTTGTGTTTGCTAGCTGTTAGCTAGCCTATTGGCTAGCTCAACTAGCCCTTAGACTATTCTAATGGCTAGTGGCCTCTCTTCTTTTGTATATACATGGAGAATCAGGCCCCTCTTGTAGCTAATGTTTTTCTTAAGCATTTTTAACCAAATAAAATTATTATTCTTTATATTGTGTGCTCTCTTTTTTGTGCCACTGTGGTTTCTGAGTGTGTGTGCCCTTAGTGGCCTTTGTTATTTGCACTTGGTGGCTTTGTGAGTGTTTGACTGCTTCTTGCTTATGTGAGCATATTGATCTTTTGGACTCATTCTATTACAACTTAAACATGCTTTTCCGAGTCATCTTCAAAACAATGGAGCAAACATTGTTAGACAAAATGGTGGTACCACTGTCAAGGTTCGTCACTCACCTCTTTTAAAGTCTTTCGTGCTCCCACAACCAATGAAGCAATTTAGGGGCTGAGCCTGCTTCCTAAGGCCAACTATTCACATGGCTACAATATGTTCAAGCTGACATTCTTTTCCAAATGAATAAACAGTTAATGATAGATTATTTGCTTATTACCTTATCTCTGAAATTTATTT | |||||||||