| mature miRNA: GCCTGGCTCCTTGTATGCCA species: Ocimum basilicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|87060222|gb|DY330539.1|DY330539 OB_MEa0005K22.r OB_MEa Ocimum basilicum cDNA clone OB_MEa0005K22 3', mRNA sequence GCCTGGCTCCTTGTATGCCA EST sequence (targeted fragment marked with yellow): TTGAAACCATTGGAAAATGTAACCAAATCTTGTGATAAACTTGTCCATACATGTCTGTTTCAAATAATCTGTGATACAGATATCTCATTATTAACATTGAAACAATTTATAGGTCGGAAGAATCCAAAGGTACGGCCATTTATAAAAGCTACTATACATTTGTAGCAAGGATTGGATTGTAAACTAAGGAAAAAATTATTTTATTAATTACCTTTGATTTGGACGAGGCACGAAACAGATGATTGAACTACGAAATGATGAAGTTTCATATGTAGTAACTGAGGAGAAAAGCCTGAAAATGAGAGTAGGTGTGGAGACAATGCGAAAGCATGCATGCATGGCTCCGAGCATGCCATCCACGAAGGCTGGCCGCGCATGGATAGACTCCACGAATGGCATACAAGGAGCCAGGCACACAAACATACCTTCAAAACAGAACCAAAACTACTACTTAATTAAGTATACCATAATATATTCTTGAACAAAGTAATGATGCAAAACATTTAAACTGGGTCTACTCTCCGTCTCCGGCCAGCACTTATTTATAGGAAAAATGGCGCAAATGAATTCCTTTTCCAATGCCCTGCCCTGCAGTAGCTTTTGAGTTGGAAACAGTTTATAATAATATATATAATTAGGTAGCTAAGACAATTCACCTGAACATCATTTCCAAGGCTCCTCCATTTCTATAATGTTTCTTTTTTGTCAGAACATAGAAAAGCTTGATGATGATGATGCCAGGTATAAGGGGGGGCCTCCTCGAATCTCCTCTTCTCTAGTTTCATGTCTTTTCCCCCCTACCGCAAACCAATTTCTTGTTATTAATTATATTCGGGAGTTCTTCAAAACACATAAATTTTCTGAAA | |||||||||
gi|87055267|gb|DY325584.1|DY325584 OB_EEa08B23.r OB_EEa Ocimum basilicum cDNA clone OB_EEa08B23 3', mRNA sequence GCCTGGCTCCTTGTATGCCA EST sequence (targeted fragment marked with yellow): GCACGAGGTGATGATTCAAAATCCACAAAAGTGCAAGAGCTGTACGTTTACGAGATAAACGAGCGGGATCGCGGCAGCCCCGCCTACCTCCGATTGAGTCAAAAGCAAGTCAACTCCCTGGGCGATCTCGTCCCCTTCACCAACAAGTTGTACACCGGCGACCTCAAGAAACGGGCGGGAATTACGGCGGGATTGTGCATCCTCATCAAAAACGAACCGGAGAAGAAAGGCGACCGCTACGAGGCCGTGTTCAGCTTCTACTTCGGCGACTACGGCCACATCGCGGTGCAGGGCCCTTACCTCACTTACGAGGACACCTACCTGGCGGTGACCGGCGGCTCCGGCGTCTTCGAGGGCGTCTCCGGCCAGGTCAAGCTCCACCAGATCATCTTCCCCTTCAAGCTCTTCTACACCTTTTATTTGAAGGGGATACCGGATCTGCCGGCGGAGCTTGTAGTCCAGCCGGTGGCGCCCGCGATCGAGGTGGAGCCCACGCCGGCTGCCAAGAATTGCGAACAAGGAGCCACGCTGCCCAACTTTAGTAATTAGGTTTTGAGGCCCTACTGGTTATAGCTAAAAGCATTAGGTCTGCTTTTTAGCGGTCACTTTATTGCTCTTAAAGGGTCGAGATTTAATCATCTTTCTTACACC | |||||||||