| mature miRNA: TTTATTACTCCCTCCGTCCCG species: Ocimum basilicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|87055930|gb|DY326247.1|DY326247 OB_EEa09F06.r OB_EEa Ocimum basilicum cDNA clone OB_EEa09F06 3', mRNA sequence TTTATTACTCCCTCCGTCCCG EST sequence (targeted fragment marked with yellow): GCACGAGGGTTTGGGGAATATATGGTGAGCTCGTGGCTGAGATTAGGGTTTGAGGAGGTGGTTTTCCCGTGGGGGAAGGCGGTGCACACCGGCCCCGTCGTCAGCCACCGCAAGGATATTTGCTGGGTGTTTCCCACGGCGGAGGGGGTGATAAATGCGTTGGTGTCGCTGCCGCCGCCGGAGATGGAGAGGTTCGAGGCGTGTTTCCGGCAGTTTTTCGCGCCGGAGAATGGTGTTGCGGCCATGGCCGCAGTGGAGGCGGCGGCGCCGGTGGAGCTGGCCGCGCCGGCGGTGGTTGTTGTGGAATGAATTAGTCATCATGCTTTGATCTTGTGTTGTGTTTTGGCCTTTTTTTTTCGATTTTTTTTTTTTCTCTTTTCCCTTTTTGGTGGTGCTTAAGTTATTGAAATGGTAGTGTTTGTTGCGGTCGAGTTTCCTGTTATACGATGATGTTACATATTGTGTTTTATTATTTTGATATTTGACCCGTGTATTAATCAATAGAAATAAATCATATTCTAAATAAGGAAATATCTTATCATGATTTACTTTCATTTATAGTACACGTGTCAATCATCTAGGCAGTGTAACATGATTGTGTAACATGCCATCTCAACCGGAAGTACTGGCCCACTCTGGATCTCCAGTTACAAAATGGTGCTACATATTATGTTGCACCACACTGATTCTTAACACCGTGTATTAATTAAAGGTAGATGAATTAAGATAAAACATTTGCTTCTTATAAC | |||||||||
gi|87072404|gb|DY342721.1|DY342721 OB_SEb07J17.r OB_SEb Ocimum basilicum cDNA clone OB_SEb07J17 3', mRNA sequence TTTATTACTCCCTCCGTCCCG EST sequence (targeted fragment marked with yellow): GCACGAGGCCTCGTGCCGAATTCGGCACGAGGGTGGGACGGAGGGAGTATTAAACTTGATAAGATTCGCAAATCTATCAAGCTGAGCATACTCAAGCTGGAGCTAGATACATGGAGTCAATTACAAGTTCTTATAGTGGATAATGTAGCTTGCGAATTAGTTCAACTCATTCACATATCTAGCTTAATTAGTTTGATTTTTTTTAATCAAATGCAATATTATTAAAAATCGCTCTCCAATGTAACCCAAACATGTAACATGTTGGATAAAAACAAACTACGTTTAGACACTTACCCTGGAGTTGGAAACAAGAGTTAATTTTCTTTTCCTTGGTTTAGGGCTTTAAACCTTCATAAGTGGCGGAACC | |||||||||
gi|87068258|gb|DY338575.1|DY338575 OB_SEa08I08.r OB_SEa Ocimum basilicum cDNA clone OB_SEa08I08 3', mRNA sequence TTTATTACTCCCTCCGTCCCG EST sequence (targeted fragment marked with yellow): CGGTCGAGGCTGAGGGAGCCGGCGCTGCCGCCGAACTACTGGCGGCAACGCGCTGCTGGTGGCGTACTCGACGGCGGCGTGCGGCGAGATCGCGGCGGCGGAGTTCCCCGAGCTGGCGGAGAGGGTGGCGGCGGCGCCGGGGAGGGTGACGGAGGAGTATGCGAGGTCGGCGTTGGATTGGCTGGAGGTTCATAGAGGATTGCCGTTTGGGGAATATATGGTGAGCTCGTGGCTGAGATTAGGGTTTGAGGAGGTGGTTTTCCCGTGGGGGAAGGCGGTGCACACCGGCCCCGTCGTCAGCCACCGCAAGGATATTTGTTGGGTGTTTCCCACGGCGGAGGGGGTGATAAATGCGTTGGTGTCGCTGCCGCCGCCGGAGATGGGGAGGTTCGAGGCGTTTTTCCGGCAGTTTTTTGCGCCGGAGAATGGTGTTGCGGCCAAGACCGCCGTGGATGCGGCGGCGCCGGTGGATCCGGCCGCGCCGGCGGTGGTTGTTGTGGAATGAATTAGCGATCATGCATTGATGTTGTGTTGTGTTCTAGATTTTCGAGTCAAGTTCGATGACTAATTCGAGCTTTTTCGAGTCAAGATCGAGTCAACTCGAACGAGTTCGAGCTTTTTTTTCCTTCTATGTAGGGGTGCTTGATTGTATCAATGATGTTATTGAAGTCCTTAAATAGGTTGAGTATTGGCGAGGTGGTATTCTCTGC | |||||||||
gi|87073490|gb|DY343807.1|DY343807 OB_SEb09K11.r OB_SEb Ocimum basilicum cDNA clone OB_SEb09K11 3', mRNA sequence TTTATTACTCCCTCCGTCCCG EST sequence (targeted fragment marked with yellow): GCACGAGGATGAATTCTAACCACTAAATCCTTTCCATTTTTGGTAATGGGACTAATAAATGGGACATCTCAAAAAGGAAAATGGGACAATTTAAGTGGGACGGAGGGAGTATTAAACTTGATAAGATTCGCAAATCTATCAAGCTGAGCATACTCAAGCTGGAGCTAGATACATCGAGTCAATTACAAGTTCTTATAGTGGATAATGTAGCTTGCGAATTAGTTCAACTCATTCACATATCTAGCTTAATTAGTTTGATTTTTTTTAATCAAATGCAATATTATTAAAAATCGCTCTCCAATGGACCCAAACATGTAACATGTTGATAAAACAAACTAC | |||||||||
gi|87069615|gb|DY339932.1|DY339932 OB_SEb01E06.r OB_SEb Ocimum basilicum cDNA clone OB_SEb01E06 3', mRNA sequence TTTATTACTCCCTCCGTCCCG EST sequence (targeted fragment marked with yellow): TGTCGCCGCTACTTGCCGACGTCGTCTTGCCTCCGATGATACGATGACGTTCTGGCTGCGGTCGTTGGGTCGTCGCTGCGCCATTTTGTTGCCATCATTTTTTTCTTTTCAGCCCGTCAATGCTTTCCCGTGCTTTGGCTACGTTGTTCCCATTTCTATATGGACTAAAATGGATTCGATGATTATCAGCTACTTGGATTTGAAGAGGCTGAATGTAAAAGTTTGTTCTCAAGAAATACAACAAGTATGAATCTAAATTGTTAGCTTTTTTTTTTTTTTCTAGAATTGTACTCCCTCCGTCCCATTTAAATTGTCCCACTTTCCTTTTTGGTCTTTCCCATTTATTAGTCCCATTACCAAAAATGGAAAGGATTTAGTGGTTAGAATTCATCAACCTCACTCCTCCACCCACTCACACCACTAATTTTCTTTTTCCTTGATACCCGCGCCTAAAAGTTTTGGGACAATTCTCGCGGGACGGAGGGAGTAATAAATAAAGTGGGCTACATTGGCCAAATGTTGCCCGCTGACCGCTGTATGTAATCTATCGAAATTAGAGAGTTAGCTATTGAGAGATACAAGGAT | |||||||||
gi|87065518|gb|DY335835.1|DY335835 OB_SEa03B04.r OB_SEa Ocimum basilicum cDNA clone OB_SEa03B04 3', mRNA sequence TTTATTACTCCCTCCGTCCCG EST sequence (targeted fragment marked with yellow): GCACGAGGGTGTTTCCCACGGCGGAGGGGGTGATAAATGCGTTGGTGTCGCTGCCGCCGCCGGAGATGGAGAGGTTCGAGGCGTGTTTCCGGCAGTTTTTCGCGCCGGAGAATGGTGTTGCGGCCATGGCCGCAGTGGAGGCGGCGGCGCCGGTGGAGCTGGCCGCGCCGGCGGTGGTTGTTGTGGAATGAATTAGTCATCATGCTTTGATCTTGTGTTGTGTTTTGGCCTTTTTTTTCGATGTTTTTTTTTTTCTCTTTTCCCTTTTTGGTGGTGCTTAAGTTATTGAAATGGTAGTGTTTGTTGCGGTCGAGTTTCCTGTTATGCGATGAAGGTACATATTGTGTTTTATTATTTTGATATTTGACCCGATATAGGGATCAATAGAAATAAATCATATTGTAAAT | |||||||||