| mature miRNA: ACAAAGCTGTAGCGTTATTC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|29662433|gb|CB658708.1|CB658708 OSJNEc14P01.f OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc14P01 5', mRNA sequence ACAAAGCTGTAGCGTTATTC EST sequence (targeted fragment marked with yellow): GCCGTGCTCGCGCTCGCTCGCTCGGGCAGTCGGTCTCCCTCCGCGAGGAGAGAGGAGACCCTTGGCAAGCGTGGAGGACGACTCGGTGCCGGCCGAGTGCGGCTGCTGCTGCTGCGGCTGTCTCCTGCCGTGGCCGCGAAATCATCGGGTTGGCCGGTGGTCGGCGCACGCAGGTGCTAAGAGCTACAATACCTGAGAATTCAGTTAGTGGATCATCAGTTCGAGGAAAGCTGCGAGAAATGGAGATGGACTTGGCAGTCGAGCAGTACGGATGCGTGCATTACAGGAGGAAATGCAAGATAAGGGCGCCCTGCTGCGGCGAGATCTTCGATTGCAGGCACTGCCACAACGAAGCGAAGGACTCGTTGGAGGTCAGCATCAGCGACCGGCACGAGATCCCTCGCCATGAAATCAAGCTGGTTATCTGCTCTCTCTGCAACAAAGAACAGGATGTACAACAGGATTGCTCCAATTGTGGGGCATGCTTGGGTAAATATTTCTGCGCAAAATGCAACTTTTATGATGACGATGTATCAAAGAACCAATTTCACTGCGATGGATGTGGCATATGCAGAACTGGTGGTGCAGAGAACTTCTTTCACTGTGACAAATGCGGATGCTGCTACAGCTATGTGCTGAAGGATTCCCATCATTGTGTGGAAAGAGCAATGCACCATAACTGCCCTGTATGCTTCGAGTATCTATTTGACTCAACAAAAGACATCAGTGCACTGCACTGCGGACACACGATCCATCTGGAATGCCTATACGAGATGAGATCCCATCAACAATTCTCTTGCCCGGTCTGCCTGAGGTCTGCTTGTGA | |||||||||
gi|33381836|gb|CF197179.1|CF197179 Ir64vi1.5_G04 IR64-VI Oryza sativa Indica Group cDNA clone IR64-VI1.5G04 5', mRNA sequence ACAAAGCTGTAGCGTTATTC EST sequence (targeted fragment marked with yellow): GGACCAGTACACTTGCTATCTTGAATTTGTCAGGGTGATGTTTATCTTGAATATGTCAGGGTGAAGTTACCTGATCCTAACATAATTGATAATAGTACGTGTATGCGATCATTTAAAAGAGATGTTTTACTTTGACTTGGAAGGACTGTACAGCTTTGTGAAGAATTTTGTAAAGGGAGTGGTTTGTGTTGACATTTGCAAATGTTGCTTTTCTAACAGATATCAGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTGGGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAACTTGGAATTCATGACAAGCCAGTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGCTCGCGTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGATTGTAGNCAAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACNNNNATNNNNCAATACACTCAGTTGCACCNNNNNNNNGCCCCTGCAACAAGCTGNNNNNTCTNNNN | |||||||||
gi|88316157|gb|CI620435.1|CI620435 CI620435 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone ACAAAGCTGTAGCGTTATTC EST sequence (targeted fragment marked with yellow): GAGTCGTGCGGCGGTGTTTCCCCTTCTTCCTCTCGGCGGCGACGCCGACTCCTCGTGAGTTCGTCCGCCGCCGCCGCCGCCACCACCTGCAGCGATCCCCATCCATCCCGCGAGCGAGTAGGGGCGCGCGTCGGTTGTCCGGCTGCTTCCGCGGTATCCTGGTGTTTAATTTGGCACCAGAGTGGGATCTAGGAAGTGGTGGGAAATGGAGAAGCGTTACAGCTTTGTCCAGGGTCAGTGAAGATAGATTTTGCCTCTGCCTCGTATGCTGGCAAGGCAGATATCGCTGCTACCGAGGCAGCGCTCTTGCATGCGCTTGGGCCGCCCCGAACACCTCCCTGCTATCAGCTCCCACTGGCAAAAGTAAATTCATCACTGCCACTATGGCCTCCAGTGATATGGCCTTTAAGATTTGCCCAGAAGGGTCCTATGTCATTG | |||||||||
gi|38481395|gb|CF965484.1|CF965484 7712rsiced_11047.y1 Oryza sativa cv. LYP9 trefoil whole plant cDNA library Oryza sativa Indic ACAAAGCTGTAGCGTTATTC EST sequence (targeted fragment marked with yellow): GCACGAGGGACGAGCCGGCCACCGGAGTAGACTCCTACGGCGAGGGCGTCTACACGTCGGAGACGGTGACCACCGAGGTGGTCGCCGGCGGCCAGGACGAGTACGAGAGGTACAAGAAGGAGGAACTCTACAGCTTTCTGAAGGAATCATTCTCGTCAGGTAGATGAATGTGCAGTTACGACAACTACGGCAGGGTCAAATTCAACAACATCCGATACTCATACTGTACTAGAGCTTGTAGTAACAGAAGCAGCAGCATCAATTCCTGTCTGGGTGCCACATTTCCAAGCTTGGCAAACCAACCACAATTCCATATATACAGAGTGTGTGCAAAGCATATTGCCCTGATCAATAATTGCAGCTCACCATCATGCTCCTCAGCTTATGGTGGTTCCGGTATGATCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|117221944|gb|CT852940.1|CT852940 CT852940 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD ACAAAGCTGTAGCGTTATTC EST sequence (targeted fragment marked with yellow): ATGAACAAAACCGAGCGGAGCTCTGTCTCTGTCTCTGTCTCTCCTGGCCATGTCCGGCCATGGCCGCCACTGATCGATCTCCATCCATAGAGCATCCCAAATCAAATCCATTCGCCACCAGCCACCCCGTACACCGAAGAACCCATTTTACCCACTTTCCCCTTCACTTCCCCTTTGAATCGAGCGTCACCGGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGGTTCATGCAATTGTGCTCGCCGTTCCGGCCTCCTCTCTCACTCCCTTGTCCAGCCACCGCACTCCCTAGGTGTGCCACACCCGGGAACACAACCCGCCGCCAGTATTGCCGCCCTCCGGCCACTGGAGCACCGGGGGGGGGGGGGCTCCCTCCTGTCCCTTTGCTCGGCAGAAAAAGGAACAGGAGGAAGATAACGGGAGGAAGGAGGAAAAAAAAGCCTGACACGGGGGGCCCATTGAATACGACGTGCACCCCAATGCCCGGTGGAAACGCCAAACAATAAGCGACGTTTGTTGATGACGGCCGAAGAACCTGGTACGGTCCCTAAAAAACCGGGGCCTCAAGCTTGCCCCTTGGTTGGCATCCCGGGAGCCGACACCCCGGCACTTCAGAGGGGCAAAAGGCCAAATCCCAATACCCCAGATCTCCCGACCTGGAAAGGGGAAGAATTTCCCCCAAAGGAAGGCTTTGTGTCCAAAAGGAAGCCCGCCTTGGGGCCATAAACTGGGATGGGGACACTGGTACCCCCAAAACAGGAAAACGCCCAAACCTGTGCGCAGAAAAGGAAAAAGTCGTATCCCCCCGTTACCCCAGCAACGTGGAACAGCGGGGCGCCCCCACAGTCCGCACCACAAAGCGTCGGCGGGGTCGTTAGAGGGAGGGGGGGGAGGCAGGAGGACGGGCGGCGGAGAAAAAAGAAGACGCGGCAAGAGCGTCTCCCCCCATGCGACCACGATAGAACAAAAACAGAACGCTTGCGAAAGAGAGGGCGCGGCCGTACCCAGAGGGCCAGCAGAGAGTATCGCTACAGCCTTGTGAGAGAAAGAAGGGAGCTTTATGAATAATAAAACACACCCATAGATTATGACGGCCCACCCTTAGTGGAGAGGACACAACCCAATAGTGGAAGGAAAACCACCGTAGTGAGGGGTCGGGGGCGGCAGGACAGCGGGGCAGCTCCTCCTTCGCGCAGGGGAAAGAAGGGGCGGACAACATCACGGACGCGGAAATAAGACACGACAGGAGAGAGACACAAAATGGCAAGGGTGTCCGCGTTGGTGCTGGTCGTGTCACGCCGACGGCCCACATCGCCCCCGCCGCACGCACAACGAACGAACGCGGGCGGCGCCACACTGACCCCTCTCAAACGAGCACGCGGAGAGAGGAGTTTAGGAGTGGAGGAGGGCGGCGGCGCGACTGAGGATGTTGGATACGAGAGGCATATAAGCCCTGACGGACCAGTGAAAGTGATATGAGGATGAATGGA | |||||||||
gi|88479989|gb|CI417260.1|CI417260 CI417260 Oryza sativa (japonica cultivar-group) callus 100ppm ZnSO4 for 1week Oryza sativa Ja ACAAAGCTGTAGCGTTATTC EST sequence (targeted fragment marked with yellow): GAAGAAAGATACAGTTTTGTCATTGCTGATGCTAAATTACATTGTATACCTAGCACAAAAAATTACACTGTATAGCTTCACCAATTGGGACTGGGAGGCCGTAAAAGATACAATCACAGAACATGTATTTACATCTAGCTATATCATCTTCTGTAGTGTATCAGGTACAAAATTTCCAGTCGAATTGCTAACGACATGGATAGGGCTTCCCCAAGTCTACTGTCTAAACCCGCTTCCCATCTACTACTTACTACACAGCATTAGAAGTTACTACATACTGCCAAAACAACGCACTTTACACCATAAGTTGCAGTTTCAGAACTAAGTTTACCTCGTCAGACTATCGTCACTGGAAATATGAACCGAAGGGAAGTAAGAAAGGGGAAAAGAATAGAATAGTCACTTGGCTTT | |||||||||
gi|88476414|gb|CI413685.1|CI413685 CI413685 Oryza sativa (japonica cultivar-group) callus 100ppm ZnSO4 for 1week Oryza sativa Ja ACAAAGCTGTAGCGTTATTC EST sequence (targeted fragment marked with yellow): GAAGAAAGATACAGTTTTGTCATTGCTGATGCTAAATTACATTGTATACCTAGCACAAAAAATTACACTGTATAGCTTCACCAATTGGGACTGGGAGGCCGTAAAAGATACAATCACAGAACATGTATTTACATCTAGCTATATCATCTTCTGTAGTGTATCAGGTACAAAATTCCCAGTCGAATTGCTAACGACATGGATAGGGNTTCCCCAAGTCTANTGTNTAAACCCGCTTCCCATCTACTACTTACTACACAGCATTAGAAGTTACTACATACTGCCAAAACACCGCACTTTACACCATAAGTTGCAGTTTCAGAACTACGTTTACCCTCGTCGACTATCGTCACCTGGAAATATGAACCGAAGGGAAGTAAGAAAGGGGACAAGAATACAATAGTCACT | |||||||||
gi|58660329|gb|CK049009.1|CK049009 50532rsiceh_21775.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G ACAAAGCTGTAGCGTTATTC EST sequence (targeted fragment marked with yellow): CGATTACACAACCAATGCTTGCCACANGTGGAAGATGCTGGAAGATCAGTCAAGTCAGGCGAAAAGGACACTTCAAATGCCAGGAGGTCCAAGTTGAAGTCAGTCAAAACCCTCCGCATTGAAACTGGCAGAAGCAAGGAAAGAATTACTCCTTTGAGTTACAGCTATCAGAAAGAAGAAAACCAAAATGAGAATCCTATATGTTCTCAGAACTGTGGGATAGAATGTGAAGCCTGCATGGTTTTGTTTAATAATTCTTATGTCGGAGAAGCTGAAGAAAAGGAAAAGATGAATATCTTGGACAGAATTATGATGGAGGAGAATCAGGAACAGACAAATCATCTTCAATCCAAAGAATTTGTGCATTATGTTGCCCCTCTGAATTTGGACTATGAAACATTTTCAGATAATGAAAACTGCGTGCTGAGTGTTGCTAAGGAGACAGAGCATAATGATTTCAACCCTGTGAATTGTATCTCACAAGATTCAGTTTGTGAAAATCCACAGAAGATATCAGAATTATTGCATTCTGTTTCCCCTCTGGTTTTCAAAGGCGATGACTTCACTGACAGCAAAATCCTACAGCTTTGTGCTTCTGTACATAAGGAGTTGTCTGGGCCCATCTTAGAAAATCCATTC | |||||||||
gi|88462768|gb|CI519680.1|CI519680 CI519680 Oryza sativa (japonica cultivar-group) 5 days after pollination pistil Oryza sativa ACAAAGCTGTAGCGTTATTC EST sequence (targeted fragment marked with yellow): GCGAACCAAAAAGCAGCAGATGCAGCAGCATTCCTCTTAGAGCAAGTACAATATGAAGCTAGCACTCCTAAATTAGCTATAAGCATATATGGAGAAGAGATGAGAGGAGAGGAGAGAAGAGAGCTACAGATTTGTTAGCTGTAGTATGGGCTACAAGACAGTACTGATTGGTATAGTATTTTTTTATATGAAACTATTATATGTGTAGACTATTAGATTAACAGTGGATGGTGTGCCAATTTTTAGAGCTAGCAGTTGACTATACAATTAAACTTGCTCTTAAAAAAATGCAGCAGCATTAAGCCCGCCGGCGACGATACCGGCGTCAGCGCGGCGGTGGANGGGAGGGTGTCCACCCATGGCGACCACTTCGCCTGTATAAAGTAAGGGTCG | |||||||||
gi|88289682|gb|CI522815.1|CI522815 CI522815 Oryza sativa (japonica cultivar-group) 1 day after pollination pistil Oryza sativa J ACAAAGCTGTAGCGTTATTC EST sequence (targeted fragment marked with yellow): GTTTTTTTTTTTTTTTTTAATCCAATCATGCTAAGCTGTCAGCGTAGATTAATAGAAGCTACCAAAATTCATCAAGCATGACGAAGTGCAGCAAAACACCTCTTAGGAATAGCTAAACAAAAGTGTTACCCATGCATTGCATGTCTAGGTGTCACTAGCTAGTCTACCGTATTTGAATCTAATAAAACTAAGCCATTAAGATCCACATCCCTTATAATGTGCAAAACGATACAGCTTTGTTTCAGACATGAAATCTGCTTTGCCAGTGACCTGGATGAGATGGTAGGCCAGATTTTACTGGGTCACCATTGTTACACCATTGAATTTGTGCACATGGCCATGCAATGATACTTTTAAGTGCCTCAGCCATCTTCATCCCAGGTGGGCGTAGCAACGGAGCCTCTGGTTTCAAAACATCATTCACAAACACCTG | |||||||||
gi|86503208|gb|CI145841.1|CI145841 CI145841 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa ACAAAGCTGTAGCGTTATTC EST sequence (targeted fragment marked with yellow): ATTAGATGACATGGTCAAAAGATATATTTCGAGGAAGTATAGCACTGACCAACTATAAATACCACCTCGCTCATCAGACTCCAAACAACTCACACAGCTCGCACTTTCCTAGCCCACTAGCCATCATGGAGAAGAAGCGGGTGGTCATCGTCGGCGCCGGCGTGAGCGGCCTGGCCGCGTGCAAGCAACTGCTGGAGCGCGGCTGCCGGCCGGTGGTGTTCGAGGCGGACACCGGCGTGGGTGGCGTGTGGGCGTGGACGCTGGAGGGCACCGCGCTGCAGACTCCGCGGCCCATGTACCAGTACTCCGACTTCCCGTGGCCGGAGACGGTGACGGAGGTGTTCCCGGACCACCGCCAGGTGATGGACTACCTCGGCGCCTACGCGCGCCGCTTCGGGGTGCTCGACTGCGTCAGGTTCGGCCACCGGGTGGCGGGGATGGAGTACGTCGGCGTCGGCAAGGAGGATGTGGCGGCGTGGGATGAGTGGGCCGGGAATGGCGACGCTTTTGGCTCCGGCTCCGGCGAGTGGCGGCTGGAGGTGGCCGACGGTGAGGGCCATCTTGAGGTGAGAATTTCGCTACGGCTTTGCGTGGAGGAAGTTTCCAAATTTGCTGGAAAAAAATATTTATAAGTAAAACCTTATGCATGT | |||||||||
gi|86872897|gb|CI326894.1|CI326894 CI326894 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone ACAAAGCTGTAGCGTTATTC EST sequence (targeted fragment marked with yellow): GCCCAAACTTAGGTGTGTCTCATTCCGCCTGTTCACATAGCAAATTTTGCGAACCAAAAAGCAGCAGATGCAGCAGCATTCCTCTTAGAGCAAGTACAATATGAAGCTAGCACTCCTAAATTAGCTATAAGCATATATGGAGAAGAGATGAGAGGAGAGGAGAGAAGAGAGCTACAGATTTGTTAGCTGTAGTATGGGCTACAAGACAGTAATGATTGGTATAGTATTTTTTTATATGAAACTATTATATGTGTACACTATTAGATTAACAGTGGATGGTGTGCCAATTTTTAGAGCTAGCAGTTGACTATACAATTAAACTTGCTCTTAAAAAAATGCAGCAGCCATTAACCCGCCGGCGACGATACCGGCGTCAGCGCGGTGGTGGAGGGGAGGGTGTCCAGACATGGGAGC | |||||||||
gi|66929353|gb|CX116201.1|CX116201 EI103B07 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl ACAAAGCTGTAGCGTTATTC EST sequence (targeted fragment marked with yellow): TTTAAGTCTCTGTCGCGATCTGGTACACGCGTCTGGAATAATCTTACAGCATTGTTGAATCGTGGTCTGCTGGATCTCTGGACTAGTCCGAGTTGGTCAGCTCAGTATGTTAGTGTTAATTGAAATTGATCAGTATATGAACGTGTATAATG | |||||||||
gi|58677588|gb|CK066275.1|CK066275 72601rsicem_4518.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr ACAAAGCTGTAGCGTTATTC EST sequence (targeted fragment marked with yellow): CGGCACGAGGTGACAAAATTCGTGGAGGTTCCAGGTGCCCTTCTGCCGCAGGAGGAATTCCCATCACCAGTCGCGGAGGAACTCTACAGCTTTCTGAAGGAATCATTCTCGTCAGGTAGATGAATGTGCAGTTACGACAACTACGGCAGGGTCAAATTCAACAACATCCTATACTCATACTGTACTAGAGCTTGTAGTAACAGAAGCAGCAGCATCAATTCCTGTCTGGGTGCCACATTTCCAAGCTTGGCAAACCAAACACAATTCCATATATACAGAGAGTGTGTGCAAAGCATATTGCCCTGATCAATAATTGCAGCTCACCATCATGCTCCTCAGCTTATGGTGGTTCCGGTATGATCGAATCGATGCCTAACACTTTAGATCTGGTGGCATTTATTCATCGCACATGATTGCA | |||||||||
gi|218488488|gb|FG955817.1|FG955817 MA_PA64s_03628 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s ACAAAGCTGTAGCGTTATTC EST sequence (targeted fragment marked with yellow): CGAATTCATTGGCTTTGAGCCATCCAGTTNATCCAAGTATATAGATCATGATATCTCCAAGGAAGAAATTTTTCTAGCTTGGATCCATTAGTGCAGTTAGTAGATGAAGTAGGAAGGGAAGCTACTGCTGCATCTCCACCTCAGTCTGTAGTTCATGAAGCAGAAAACGTCACTGGTAAAAGGGAAGCATCACCTCCTGAGAAGAAAGAATGTGACTACAGGAATGGAAGATGGGTTCCTGATGACAGCAGACCATTATATTCTGGTCTCAGCTGCAAAAAATGGCTCTCTGATAGCTGGGCTTGCAGATTGACACAACGAAAGGATTTCGCTTATGAGAAATTCAGATGGCAGCCTGAAGGCTGTGACATGCCAGAATTCCAAGCCTCCCAGTTCTTGAAAAGGACAAAACCATTGCTTTTGTAGGTGACTCCTTGGGGAGGCAGATGTTCCAGTCCATGATGTGCATGCTCACAGGTGGGGATGATCACTCGCATGTCGAAGATGTCGGTAAACGCTACAGCCTTGTCGTTGCGCGCCACGCTAAGAGACCGGAACGTTGGGCATACCGGTTCCGA | |||||||||
gi|29622054|gb|CB627065.1|CB627065 OSIIEb01M01.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb01M01 5', mRNA sequence ACAAAGCTGTAGCGTTATTC EST sequence (targeted fragment marked with yellow): CCGCAGCTGGAGGTGACGCCGATCACCAAGTACACATCGGATCCCGGGCTCGTGTTGGGCAGGCAGATCGCCGTGAACAGGACGTACATCGTGTATGGGCTTAAGCTCGGGAACATCCGCGTGCTAAACATCAACACCGCGCTCCGTTCGCTCCTTCGTGGCCACACACAGAGGGTGACAGATATGGCTTTCTTTGCTGAGGATGTTCATCGTTTAGCAAGTGCAAGTGTAGATGGTCGGATATATGTTTGGAAGATTGATGAGGGTCCTGATGAGGACAGCAAACCACAAATTACAGGACAGATTGAAATTGCCATCCAGATTGTTGGCGATGCTGAATCTTACCATCCAAGGATCTGTTGGCACTCTCATAAGCAGGAGATTCTGTTTGTTGGCATTGGAAACTGTATCTTAAGAATAGACACAACTAAAGTGCGACGGGGAAGGGACATAAGTGCAGAGGAACCTATCAAGTGTCATCTTGACAAGCTCATTGATGGTGTGCGCTTAGTTGGTAAGCATGATGATGACGTTACAGATTTGTCCTTATCTCAATGGATGACTACCCGACTGGCTTCAGGATCAAAAGATGGCACGGTAAAAATTTGGGATGATCGCAAGCCAGTGCCTCTATCGATTCTGAAGCCACATGATGGTCAAGCTGTTTATTCTGTTGCTTTTCTCACGGCACCTGAGCATCCAGACCATATAAACCTCGTTACAGCAGGTCCTCTAAACCGAGAAGTTAAAATTTGGGCTTCTGCCAATGAAGGAGGTGTGTTGTTGCCAAGTGATTCCGAGACTTGGAATTGCACACAGACATTGGAACTTGTC | |||||||||