| mature miRNA: ACAATGGAGTGAAGTGCAACAGAA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|86427183|gb|CI072280.1|CI072280 CI072280 Oryza sativa (japonica cultivar-group) NAA treated callus Oryza sativa Japonica Grou ACAATGGAGTGAAGTGCAACAGAA EST sequence (targeted fragment marked with yellow): CAACTATTTGAGAATTATTATATTGATACAGCAGCTGCCCGGCACACCAGATTACAAAGCTCTATCTTATTTTTGCAATTACACGATAAATGATACAACACAATAATTTGCCAAATGTGGCAAGATCGTACATGTTTTTGGTATGAATATGAGTTTGCAGCTTATTGAATTAATATGATGCTTCTAAGCAGAAAATAATACAGGGATATTTGGACAAAATTCACTTTGTCCCCGGCAGTTTGACAAACTTTCACTTTGCTGCCATAATGTTCATCTCTGTTGCACTTCACTCCATTGTGGTTTCGCTCAACTGCAGCCTAGTCACTGTATCAAATAACTGTTAAAGTGCCACATGTACCTCTGGGAAGCTGATAACATACAACATGACCAAGTATGGCCGTCAAGTGTTATGTTAATCAATGGTACCAACAACACCGTAACAGTGACTTGATACTGGGACTCGTTCTTGCAGAATGTCAATACCACAATGGAGCAAAGTGCAATGAAAATGGACAGCACAGTGGCAA | |||||||||
gi|88474873|gb|CI412144.1|CI412144 CI412144 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro ACAATGGAGTGAAGTGCAACAGAA EST sequence (targeted fragment marked with yellow): GAGAATTATTATATTGATAAAGCAGCTGCCCGGCACACCAGATTACAAAGCTCTATCTTATTTTTGCAATTACACGATAAATGATACAACAAAATAATTTGCCAAATGTGGCAAGATCGTACATGTTTTTGGTATGAATATGAGTTTGCAGCTTATTGAATTAATATGATGCTTATAAGCAGAAAATAATAAAGGGATATTTGGACAAAATTCACTTGGTCCCCGGCAGTTTGACAAACTTTCACTTTGCTGCCATAATGTTCATTTCTGTTGCACTTCACTCCATTGTGGTTTCGCTCAAATGCAGCCTAGTCACTGTATCAAATAACTGTTAAAGTGCCACATGTACCTCTGTGAAGCTGATAACATACAACATGACCAAGTATGGCCGTCAAGTGTTATG | |||||||||
gi|86884579|gb|CI312958.1|CI312958 CI312958 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone ACAATGGAGTGAAGTGCAACAGAA EST sequence (targeted fragment marked with yellow): CAACTATTTGAGAATTATTATATTGATACAGCAGCTGGCCGGCACACGAGATTACAAAGCTCTATCTTATTTTTGCAATTACACCGATAAATGATACAACACAATAATTTGCCAAATGTGGCAAGATCGTAAATGTTTTTGGTATGAATATGAGTTTGCAGCTTATTGAATTAATATGATGCTTCTAAGCAGAAAATAATACAGGGATATTTGGACAAAATTAGTTTGTCCCCGGCAGTTTGACAAACTTTCACTTTGCTGCCATAATGTTCATTTCTGTTGCACTTCACTCCATTGTGGTTTCGCTCAACTGCAGCCTAGTCAC | |||||||||
gi|88522081|gb|CI449814.1|CI449814 CI449814 Oryza sativa (japonica cultivar-group) whole body 3mM SA(salicylic acid) for 1day Or ACAATGGAGTGAAGTGCAACAGAA EST sequence (targeted fragment marked with yellow): GTTTCAACTATTTGAGAATTATTATATTGATACAGCAGCTGCCCGGCACACCAGATTACAAACCTCTATCTTATTTTTGCAATTACACGATAAATGATACAACACAATAATTTGCCAAATGTGGCAAGATCGTACATGTTTTTGGTATGAATATGAGTTTGCAGCTTATTGAATTAATATGATGCTTCTAAGCAGAAAATAATACAGGGATATTTGGACAAAATTCACTTTGTCCCCGGCAGTTTGACAAACTTTCACTTTGCTGCCATAATGTCCATTTCTGTTGCACTTCACTCCATTGTGGTTTCGCTCAACTGCAGCCTAGTCACTGTATCAAATAACTGTTAAAGTGCCACATGTACCTCTGTGAAGCTGATAACATACAACATGACCA | |||||||||
gi|88382142|gb|CI533346.1|CI533346 CI533346 Oryza sativa (japonica cultivar-group) after pollination embryo Oryza sativa Japonic ACAATGGAGTGAAGTGCAACAGAA EST sequence (targeted fragment marked with yellow): CAACTATTTGAGAATTATTATATTGATACAGCAGCTGCCCGGCACACCAGATTACAAAGCTCTATCTTATTTTTGCAATTACACGATAAATGATACAACACAATAATTTGCCAAATGTGGCAAGATCGTACATGTTTTGGGTATGAATATGAGTTTGCAGCTTATTGAATTAATATGATGCTTCTAAGCAGAAAATAATACAGGGATATTTGGACAAAATTCACTTTGTCCCCGGCAGTTTGACAAACTTTCACTTTGCTGCCATAATGTTCATTTCTGTTGCACTTCACTCCATTGTGGTTTCGCTCAACTGCAGCCTACTCACTGTATCAAATAACTGTTAAAGTGCCACATGTACCTCTGTGAAGCTGATAACATACAACATGACCAAGTATGGCCGTCAAGTGTTATGTTAATCAATGGTACCAAC | |||||||||
gi|88730341|gb|CI753954.1|CI753954 CI753954 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro ACAATGGAGTGAAGTGCAACAGAA EST sequence (targeted fragment marked with yellow): GTGTGACTTATTGAATTAATATGATGCTTCTAAGCAGAAAATAATACAGGGATATTTGGACAAAATTCACTTTGTCCCCGGCAGTTTGACAAACTTTCACTTTGCCTGCCATAATGTTCATTTCTGTTGCACTTCACTCCATTGTGGTTTCGCTCAACTGCAGCCTAATCACTGTATCAAATAACTGTTAAAGTGCCACATGTTACTCTGTGAAGCTGATAACATACCCCATGAACAACTATGGNCGTNAAGTGTTATGTTAATCAATGGTACCAACAACACCGTAACAGTGACTTGATACTGGGACTCGTTCTTGCCCAATGTCAATACCCACAATGGAGCAAAGTGCAATGAAAATGGACAGCACAGCGGCAAAGCAACCCC | |||||||||
gi|88470371|gb|CI407642.1|CI407642 CI407642 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza ACAATGGAGTGAAGTGCAACAGAA EST sequence (targeted fragment marked with yellow): CGACTATTTGAGAATTATTATATTGATACAGCAGCTGCCCGGCACACCAGATTACAAAGCTCTATCTTATTTTTGGCATTACACGATAAATGATACAACACAATAATTTGCCAAATGTGGCAAGATCGTACATGTTTTTGGTATGAATATGAGTTTGCAGCTTATTGAATTAATATGATGCTTCTAAGCAGAAAATAATACAGGGATATTTGGACAAAATTCACTTTGTCCCCGGCAGTTTGACAAAACTTTCACNTTTGCTGCCATAATGTTCATTTCTGTTGCACTTCACTCCATTGTGGTTTCGCTCAACTGCAGCCTAGTCACTGGTATTCAAAA | |||||||||
gi|88449448|gb|CI534007.1|CI534007 CI534007 Oryza sativa (japonica cultivar-group) after pollination embryo Oryza sativa Japonic ACAATGGAGTGAAGTGCAACAGAA EST sequence (targeted fragment marked with yellow): CAACTATTTGAGAATTATTATATTGATACAGCAGCTGCCCGGCACACCAGATTACAAAGCTCTATCTTATTTTTGCAATTACACGATAAATGATACAACACAATAATTTGCCAAATGTGGCAAGATCGTACATGTTTTTGGTATGAATATGAGTTTGCAGCTTATTGAATTAATATGATGCTTCTAAGCAGAAAATAATACAGGGATATTTGGACAAAATTCACTTTGTCCCCGGCAGTTTGACAAACTTTCACTTTGCTGCCATAATGTTCATTTCTGTTGCACTTCACTCCATTGTGGTTTCGCTCAACTGCACCCTACTCACTGTATCAAATAACTGTTAAAGTGCCACATGTACCTCTGTGAAGCTGATAACATACAACATGACCACGTATGGCCGTCAAGTGTTATGTCAATCAA | |||||||||
gi|88488018|gb|CI425289.1|CI425289 CI425289 Oryza sativa (japonica cultivar-group) callus UVB iradiated callus, 24hr after treat ACAATGGAGTGAAGTGCAACAGAA EST sequence (targeted fragment marked with yellow): CGACTATTTGAGAATTATCATATTGATACAGCAGCTGGCCGGCACACCAGATTACAAAGCTCTATCTTATTTTGGCAATTACACGATAAATGATACAACANAATAATTTGCCAAATGTGGCAAGATCGTACATGTTTTGGGTATGAATATGAGTTTGCAGCTTATTGAATTAATATGATGCTTCTAAGCAGAAAATAATANAGGGATATTGGGACAAAATTCACTTTGTCCCCGGCAGTTTGACAAACTTTCACTTTGCTGCCATAATGTTCATTTCTGTTGCACTTCACTCCATGGTGGTTTCGCTCAACTGCAGCCTAATCANTGTATCAAATAACTGTTAAAGTGGCANATGTACCTCTGTGAAGCTGATAACATACAACATGACCAAGTATGGCCG | |||||||||
gi|94362868|gb|CI053029.1|CI053029 CI053029 Oryza sativa (japonica cultivar-group) heat treated callus Oryza sativa Japonica Gro ACAATGGAGTGAAGTGCAACAGAA EST sequence (targeted fragment marked with yellow): GAACTTTTAAACACACATGTTTCAACTATTTGAGAATTATTATATTGATACAGCAGCTGCCCGGCACACCAGATTACAAAGCTCTATCTTATTTTTGCAATTACACGATAAATGATACAACACAATAATTTGCCAAATGTGGCAAGATCGTACATGTTTTTGGTATGAATATGAGTTTGCAGCTTATTGAATTAATATGATGCTTCTAAGCAGAAAATAATACAGGGATATTTGGACAAAATTCACTTTGTCCCCGGCAGTTTGACAAACTTTCACTTTGCTGCCATAATGTTCATTTCTGTTGCACTTCACTCCATTGTGGTTTCGCTCAACTGCAGCCTAGTCACTGTATCAAATAACTGTTAAAGTGCCACATGTACCTCTGTGAAGCTGATAACATACAACATGACCAAGTATGGCCGTCAAGTGTTATGTTAATCAATGGTACCAACAACACCGTAACAGTGACTTGATACTGGGACTCGTTCTTGCAGAATGTCAATACCACAATGGAGCAAAGTGCAATGAAAAT | |||||||||