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mature miRNA: ACCGTTAGATCGAGAAATGGACGT
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|88721731|gb|CI745030.1|CI745030 CI745030 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro 

ACCGTTAGATCGAGAAATGGACGT
|||||||||||| ||||||||||.
TGGCAATCTAGCACTTTACCTGCG

EST sequence (targeted fragment marked with yellow):
TTAGGTTTGATTGGATGGGAAAATATGTAGTGGAAACCACATATGTAGTGGAAACTTGAAAACTACCGTNGGATCGGGAAATGTACATCCGAGATTCATCCACGTTACCATGAGTTAAAATTTAACTCCCAGTAAAATTTTAACTCATGAGTGAATCTGCGAGTTAAATTTTAACTCATGGTGACGTGGACGGATCTCGGGCGTCCATTTCACGATCTAACGGTAGTTTCCAAGTTTCTACTACATATGTGGTTTGTGTTGAGAATATAGGCATATAATGATCTAATATATGCCATAAATAAATCATGACATTACAGATGTATACTAGCATCAACGCATCATTAGATCTACACATGTAAACTAAGCAGTANAC


gi|117226747|gb|CT853359.1|CT853359 CT853359 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD 

ACCGTTAGATCGAGAAATGGACGT
|||||| ||||||||||||.  ||
TGGCAACCTAGCTCTTTACTGCCA

EST sequence (targeted fragment marked with yellow):
GCGTGTTTAATCACAAGGACTAGTCAATTAAGGAAGGGATAAGATAATAAGACCAGCTACTAATAATTAAGAGGATTTTTTTTTGTTGTCTGCATAGCATTAGCCTGCAAATGATTGGAGGGAATGAAGAACAAATCACACACACAACCAAAAACTAAATAGATAGTGGTGACGTCGTAGTCTATGAAAAGATGAGAAAATTTCTAGGAGGAAATCGACAGGATATGCATCTCCCCTGCCTTTTTTGCATTATATATGCTCGTGTGTTTAATCACAAGGGTAAGATCATAGGACGAACCGCTAATAATAATTAAGAGGATTTTAATGTACTCTTCTTTCTTTCTTTCTCTTGATGCATAGTAGCCTGCTTGTGATTGGATTGGAGGGAATTAGTGAACTAAGTCAAACACAACCAATTGCTAGTCGTGTGTTGAGAAATATTGGAAAATAGGCAAAGAAAAAAAAAGAAAAATAAACAATTGGTTGTGTCTGAGGGGAATTTGAGGGAATTAATGTTGCATTTCTATTTAGAGACTTCTCAATACTACTTCTTCTGTTCATGTATTGTAGACGTTCTATGATTTGAATTCACATATCTATTTCATATAGGAAAAATATGTTGTGCAAACCACATATGTAGTGGAAACTTAATTAGAACTCATAGTGACGTGGACGAATCTCGGACCGTCATTTCTCGATCCAACGGTAGTTTTTAAGTTCCCACTACATATATGGTTTGCATTACATATTTATATGTGTCCCAAATTCAGGATTTGGGAACCATCCGGATCATTTTCAAGATAAAAATCACATTTACATTTCCAAAGTAGGGAACAAGGAACACAATTTGGCTCATACCTCCCTATACAAGCGGGGAATGGGGGATGGCATCGGTAAATAAGGGCGATGGCATGGAGCAATGGGATTCAAACCAAATACCCGGTAATTTAAAGCTTTATTCATGGAAATGTGAGGCCCCCCCCACAAAAAAAACCGGCTGGCCCCGCAACACCCCAAACAAAACACCCAAAAAATTGAAAAATTTAAAACCCCCACCCATGGAATGGGGGGGGGGGTTTTTTTTGTCCCCCACCCCACCCCCTTTTTTGGCCCCCCCCTTTAC


gi|117246867|gb|CT843708.1|CT843708 CT843708 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD 

ACCGTTAGATCGAGAAATGGACGT
||||||||||||||||||..| ||
TGGCAATCTAGCTCTTTATTTACA

EST sequence (targeted fragment marked with yellow):
CGCTGCCGCCCCCTCCGCTGCGTCGTCCTAGGCTCCTAGCTATGTAGCCTTCGTGTCAACGTGCTTGCGTGTCATTGTGTGTAACCGTGCAAGGAGAGGCGTTTGGTGTGCGCCGTTTTGGGGAAAATATGGGGGTGGAAACCACGTACACGATGGAAACTTGAAAACTACCGTTAGATTAAATAATAGACGCTTGAGATTTGTTCACGTCATCACGAGTAAAAATTTTACTCACAGATTTACTCGTGAGTAAAAATTTTACTGTGCGTGATAACGTGGATGATTCTCGAACATTTATTTCTCGATCTAACGGTAGTTTCCACAACATATATGGTCCACTGTATATTTTCTTCCGTTTTGGCGTGTGCGCCATCGATGGAGCAATAACAGTGGACCGTCATGGGTCGTGGGCCTGTGATAGGTTATGTGGGCCACCTCGAATTGGGCCCTTCTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAATAAAAAAAATATGGAAAATTTAAAAAAAAA