| mature miRNA: AGAGATGGGACGGGCAGGGAAG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|117225393|gb|CT853135.1|CT853135 CT853135 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD AGAGATGGGACGGGCAGGGAAG EST sequence (targeted fragment marked with yellow): ATCATGCTGTCCTTCAGCTAATCAATCTCTCCTTGCTCCTCCTCCCAGCATCAAATCTTCAGAAAATTCCCCCTTCTTCATCACATCACCAGAATCTATCACCTCTGTCACTGTTCTTGATCACAAAAAGTTAAGACAGATTTTGCTGTTCTTGCTATCTTCCCTGCTCTGCTCATCTCCTCTGCTCCAGTTCAGAAATTGCTGCTGGTTCTTGCACATTGGTGCTCATCAAGAACTGATCAGGAGCTGAAGAAATCTTGTGAGAAGCTGAAGAAATGGGAGGGAAGAATCTGGTGGTGTTGTTCTTGGTGTCGGTGGTGATGGCGATGGTGCCAGGGAGCACGCAGCTGCAGGCGTCGCAGACATGGTCGCTGCTCAAGATCCAGCAGATGCTCGGCTACCCGGCGGTGCTCGGCCACTGGCACAACTACACCGACTTCTGCTACGGCGGCGACTACAAGACCACGTCGGCGTTCGTCGAGTGCTACGGCGACAGCGTCACGCAGCTGCACATCATCGGCGGGTGGCGGCGGCTCGCCGACGCCGCCGCCGCTGCCCAAGACGTTCTCCATCGACTCCTTCTTCACCACGCTGTCGAGGCTCCCCGACCTCCGGGTGCTCACGCTCACCGGACTCGGACTCTGGGGCCCATTGCCCGGGAAGGTGTCGCGGCTCGCCGCGCTCGAGATCGTCAATGTCAGCGGCAACTACCTCTACGGCGAGCTCCCCCTCGCGCTGTCGCGGCTCGGCAACCTGCAGACGTTCATCGCCGACGACAACATGCTAAGCGGCGAGCTGCCGGCGTGGCTGGGGAGGCTGCCGGTGCTCGCCGTGCTGAGCCTGAGGAACACTCGCTGGAAGCACCTTGCCGGGGTCGGTGAGCGACATGGCGTCGCTGCGGTCGCTGTCGCTTGGCGAGCAACAACTTGTCGGGCAACCTGCCGGGACATGAGCGGGCCCAAAAACTTCCAGGGGATCAACCTCGCCAACACTCCCTTCGGCCCGAAATCCCCCGGGCTTCGCCGGAAAGGGGCCAACGTGGGGCTCCCCGGGAAAAAGTTTCACCGACGGCCTCCCCCCGGAAACTCGGTTTTTTTTCCCCTCCTCAAGGGGTTCCAAGTGTCCAAGAAAAGGGTTTCCCGGGCCCGTTTAGTCTCGCGGCTGTTTTTTCCTTGCCCGTCCCATCTGAAACACATTAGCGTGCCCCCGCGGGAACCACCTTCTCCCCCGGGAGGGGTTTTCCCCGGGAAAAAAATGTGTGGGGGGGGGGGGAAAAAACAACCAACCCAAAAATAATTCT | |||||||||
gi|88431869|gb|CI560114.1|CI560114 CI560114 Oryza sativa (japonica cultivar-group) root of seedling in anaerobic condition for 3 AGAGATGGGACGGGCAGGGAAG EST sequence (targeted fragment marked with yellow): CTTTTTTTTTTAGAAAAGTACATTATTGATTACTAATAGCACATACAACACATCAACACATTGCCACAATCTCTACTGTCATTTCACTTGTCAAAATATTTAACATTAAGACTGTTCGTTCAATGATTGTGGTTGTGGCTGCTCACCTTGCCAAGCCCATACAATATCCTTTACTGCTGGTCTCATCTCTTGTTTGACCTTTTGATACTCAAGTGTATCACCATTTATCTTCGTAAATTCCACTAAATGAAAATCTGGTGTGATCTGAAATATTTCAGCATTGATGGACATTACACCTTTCCTTCCAGGTTTTGATCCTTCCATCTTTAACAAACCACCATTTTTCTTCAAGAATTTTAATCGTAAATTCTTCGCAACATCCTCAAGCTTTT | |||||||||