| mature miRNA: AGCTGGAGCTCAGCCAAACAG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|29688700|gb|CB684975.1|CB684975 OSJNEf15A02.r OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf15A02 3', mRNA sequence AGCTGGAGCTCAGCCAAACAG EST sequence (targeted fragment marked with yellow): CAATCATTGCATCCCGTTTGTATCCATGGGTACAAAGTGCTAGCATCAGGATACATATATTCTTCTTTTATTGTCAAGCAGTTCATGAGCACCAATCGATCCATTCTTTTTCTGATCATGTTGTGCTAATTTATATTTGTTCAGATTTACATGCCATTTGGGTTCACATATTCATAGTTATCAAATATTTCTGTCATTAGAGTAGCTGGACTGACAATCATTTTTAGTTACAGTGGTATATTTGGCAGAAATCTCACATCTTAATATCTCAAAATTAAAGTAACAATACTCAAATAAACTTTTCCTCATGATTTCTATTGTGCTTTAGGTGTTATATATAATTTTGAGATACCGGTCACGCCGACGCCGTCTTCTCCCTACTTCACCCGCAGGGTGAAACGACAGTTGAAGGTTACTAGAGCGTTTGGTGCAGGCTTTCTAAATAAGATACAAGTGAAGCTATTTGTGTGAGCTCTAGCTGTACCAAAATCTCTCGAGTTACATTGTTGAACAAAGTTGGTATTGGCTGTGCAACCAGATCAGTCGCACAGGACTTTGTCCAAAATGTGTGTGTCATTCCTAATGGATGCATAAACAATAATAAAACTTTTGTATGCGATATGGGGTTGATCTAAGGAAGAATGTGAGGGGGATT | |||||||||
gi|86902990|gb|CI324460.1|CI324460 CI324460 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone AGCTGGAGCTCAGCCAAACAG EST sequence (targeted fragment marked with yellow): CCTTGGTCACTCCCTTTTTGTTATCTGATTTAGACGTACATACTCACGTTTAGGCATCGAAACATTAGGGCATATTTGGTACAGCTCCAACTCTTAAATATAACTCCAGGAGTTGAGTCTGGAGTGAAGTTGTGGAGCTGCCTAGACAAAGCTCTACAACTCTAGTACATTTTGTGAGAGAGCTCCACCCAACTCCACTTCCAATTTGGGTGGAGCTGAAATTGTTTGGTTGACCTCCAGCTCCAGCAGAGGTGGAGCTGGAGCTGTAGCTGTGCCAAACAGGCCTTTAGAAGGGCTGATGTTGTCCCAGCCTGGCAG | |||||||||
gi|87038689|gb|CI192728.1|CI192728 CI192728 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group AGCTGGAGCTCAGCCAAACAG EST sequence (targeted fragment marked with yellow): TTGAAAAATGATACCCTCTTAGNGCAAACTTATAATGTGGACATATAAGTAGTGTTCTATTTGTAAGGCCTGTTTAGTACAACTCTAACTCCTAAATATAACTTTAGGAGTTGAGTCTGAAGTGGAGTTGTGGAGCTGCCTAAACCCAGCTCTACAACTCCAGTACATTCTGTGAGAGAGCTCTACCCAACTCCACTCCCATTTTTGGTGGAGCTAAAACTGTTTGGCTGAGCTCCAGCTCCAGGAGGGGTGGAGCGGGAGCTAGAGCTGTGCCAACCAGGCCCATAGTTTTGAAGGGCTGATGATCTGATAATCCTATTTATAAGAAACCATCCACTACATTTGTAGTTTAGAAACCATCCACTACATTTCATCCGCATGTGGCGAACCTACTCGTATCGGATGATTATAGGATTAGGAGTCATCTGGAACTCCTTTTGCTCCACATTATACCTTCACCTACCTGACACTCCAGAATCCTGATGCAGCTGCTCCGTTTATCAGGACATAGGTGTTGACGCAGCTGCTCCGTTCATCAGGATTTAGGAGGCGTAACACCGG | |||||||||
gi|88245921|gb|CI245770.1|CI245770 CI245770 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat AGCTGGAGCTCAGCCAAACAG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTAGCTGTACCTAATTTATTTTTATTATGTGTGCACCACTCTTAATACAAATGGCCTGTTTGGTACAGTTCCAACTCCTAAATATAACTCCAGGAGTTGAGTTGTGGAGTTGTCTAAACCCAGCTCCACAACTCTAGTACATTTTGTGAGAGCTCCACCCAACTCCACTCCTAGTTTTGGTGGAACTGAAATTGTTTGGCTGAGCTTCAGCTCCAGGAGGGGTGGAGCTGGAGCTGGAGCTGTGCCAAACAGGCCCTAAATTAGACACCCGTATCAGCTTAAACTCAATATAAAGTAAAGTAAATTAAGTAAGTGGCACCCTCCACTATTCTGTTCTAGCCCCGCCCATTGTTGCATTGGTAGATCGTAAGGCAGCCGGGGGTGTAGGGCGTGCCGCCGTCGGCGGCGCACGTCTTGTCCGGCGGGCAGAAAGGCTGATCCCTCTTCAGCCCGTCGAAATACGAGCCGTGCCCGTCGCCGACGACGAGGCCCACCGGGAAGAACTCCGGCGCCACCTCGTCCTCCACCGCCGC | |||||||||
gi|112786967|gb|EE591790.1|EE591790 RAH03b-1-G10.seq Rice mixture of leaf, root, panicle Oryza sativa Japonica Group cDNA, mRNA AGCTGGAGCTCAGCCAAACAG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTAAATTAACTAGATGAATTCAAATAAGAAGAAGAGCTGTACTGAATTTTTGTTCAGGGGAAGAGAGGATTAGGAACAGGATTAATTAAGGCATAAGTACACCACATTCCACGTCACTACCACTCCACTCCACTCCACCACCCTCAAAACACACCACGTACACACATGTACGGATGCAATCTTCAAGCTCAAGCTCTCAGTCTGACCGCATGCGGTTTAGCTGGTTCAACGCCGGCTGCAGGATGTTGTAGAGAACCCAGGCGATCGCCGGCGCCACCACGAACAGCAGCAGCAGGCCGCGGTTGTCGCCGCCCTCCGCCGCCGCCGCCTCCGCCGCCAGCCTCGCCACCTCCTGCGCCGCCGACGCCTCGGGCGGGAACGCGAGCCCGGCACCCGCCGCCGCGCCCAGGCCGAGCCCGGCGACGAGCACCTGCTCCGACCGCATGCGGTTCAGCTGGTTCAGCGCCGGCTGGAGGATGTTGTAGAGCACCCACGCGATGGCCGGCGCGATCGGCAGCAGCAACGCCAGCCCGCGGTTGTCCGTCGGCGCCCGCCGCCGCGGCGGCGACGTCCGCGATCTGCTGCGCCGCGAGCGCCGCGTCCGTCGACGCCAGCGCCGAGAAGAACGCGCCCGCCATCGCCGCCGCCGTCACGGGCGCCGCCGCCGACGACGACGACACCGACATGCCCTTCTTGGCCAGGCTCTTGAGCGAGATGCTAAGGCACCCTGCCGCTCCCCGACGGCGCCGCGATGACCGCGCCACGATCTTGGACGGCTTAAGCATGCAATCGCAGCTATGGTGGTCGCCATTGACGCCTCTCTCCTCCTCTTTCTCTGAGCTCTAGCTCACTGCAACTATGCAGCTGCTGTGGATGCATTCTGGGAGGGGGGGGAATCTTTCCGAGGGGTCCGTACCAATGCCCTAATGATCGATACATTCACTGCGTCGTTTACACCGTCTGACTGGAACTGGCTACCACTAATGCCTGCACCATCCTCGCAACTGGCTAATACGAAAAGNNNNN | |||||||||
gi|29617951|gb|CB622963.1|CB622963 OSIIEa10F14.r OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa10F14 3', mRNA sequence AGCTGGAGCTCAGCCAAACAG EST sequence (targeted fragment marked with yellow): CGAGACGGGCCACGTGGGGAAGTTCGTGAACCGGGCGGAGGTGAAGGCGGCACTGGGCGCACGCACTGACGTGGAGTGGGAGGACTGCAGCGACACGGTGGGCGCGGCGATGCACGGGGACGTGATGAAGAGCGTGAAGCCGGGGGTGGAGGCGCTGCTGCGGGGAACGCGCGTGCTGCTGTACCAGGGCATCCGCGACCTCAGGGACAGCGTGGTGTCGACGGAGGCGTGGATGCGGGAGCTCAAGTGGGACGGCCTGACCGCCTTCCTCGTCGCCGACGCCGGGTACGTGCAGCGCTCCGGCCCGCTCTCCCACGTCGTTGTCTACGGCGCCGGGCACCTCGTGCCGGCGGACAACGGCCGCGTGGCGCAGGAGATGATCGAGGATTGGGTGTTGCAGGCGGGGCTATTCGGGCGCCACGGCGGCATGAAGCGCGCGGCTTGACTCCGCACTCCGGGGCACGGGCGGAGGCCTCATCTCTCGCGGTGTCAAACTCTAATCTGATTTGAGAATCGAGCAGAGTATGAGCCAGTTTGGTACAGCTTCAACTCCTCAATTTAACTCCAGGAGTTAGATCTGGAGTGGAGTTGTGAAGCTGCATAAACCCAGCATCACAACTTCATTTTGTGAGAGAGCTCCACCCAACTCTACTCCCAGTTTTGGTGGAGCTGAAACTGTTTGGCTGAGCTCCAGCTCCAGGAGGGGTGGAGCTGGAGCTGTGCCAAACATGCCCTACATTGAAGGATACAATTCCGGGGAAATACAAGCATTCGAGTCTTTTTAGG | |||||||||
gi|56158300|gb|C97743.2|C97743 C97743 Rice callus Oryza sativa Japonica Group cDNA clone C62484_1Z, mRNA sequence AGCTGGAGCTCAGCCAAACAG EST sequence (targeted fragment marked with yellow): ACGCTCAAGGACAAAGTACCCCGCGAGACCCACGAGATATTCACCAAACCCCGACGCGCTGCACAAGAAGGGGTTCACGTTCATGAGGCACACGTTTCTGAACGGCCAGGACATCATCGTCGACATCGACCGCTTCAAGCCGGTGGTTTCCGCGCACTCAACAGCCTCGCGCGCTAACCTAGGGTCTGTTTGGCAGAGCTCTAGCGCAAGTCTAATGGATGAGTCTAGGGTCCGTTCTGCATTCGGCCTAAGCACGCAAACGTGTTCGGTCTGGCCCACATGCGTCTTGCCCATCTTGAGACACTGTGCTAGAAAAAATTGACACAGAATTTACATAAAAAACTTTTAATATAGGAACATTTTATATAAAAAAAAAAAAAAAA | |||||||||