| mature miRNA: AGGAATGTCTCCATCATCAGG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|27921101|gb|CB096909.1|CB096909 AF53-Rpf_10_I05_T7_021.ab1 IRRI Drought Stress Panicle Library Oryza sativa Indica Group cDNA AGGAATGTCTCCATCATCAGG EST sequence (targeted fragment marked with yellow): GGACGAGACAACGGGAGTTATACAATCAAGAGACAAGGGGAGGACAGAGAGAACGAGCTGCTGACATCAATAGAAGTAGAAGCCGACATCTGTCCAGGTCGGTCGAACCTGGAGAAACAAGAATCAGGCGTCAATCGGCGACACCTCCGCATCTCTCTGACCCTGCTCCAGCAGACAAGGAGCAAGGGGCGTTGCTCATGCTTAAAAGGCACCTGGATCCTATGCTGCATGAGGCTATGGTGGGAGGTTCAATTTATTCCCCTGACACTACTCTGCCACGCCCTGCTTCCCCTGTTTTTGTTCTTTCATCTGCTGCAGAACCACAAGAGAACTTAGTGGATGAGGCCCAGCATGATGTGGAGACATTCCTAGCGGAGGTGACCACGCCCATTCAGCAGCCACTGCTGTCTGCCTGCGCCAGGAACAAAGCTGCGTCGACCCTGCCGCAATAAGCATTACAAGAAGCCGCTCTCCCCAGCAGACATGAAGACAATCACGACCCTGGTGGAAAACGGAGGCTGCAAAGGAGTTCGTCTGCGCGCTAAGAAGGCGGCCTCTGTGGTGCCGATTTGAAGCAGTTGCCTACGTGATGATGATGTTAGGCTGCTTAAGTAGAAGAATACTATCCTTGGTCTCTGTATTGCAAATGAGCACCCTCTTCGTGTTTCTGNCAATCTTTCTGGCTGNGTTTCAGAGGTCGTCAGCTGAGCTTCATNCCAGCCATCGNATACNAAGGCCCCCCCAGCTGGTGGGGCTTCTGGTTATGGCGCAGCTAGACTGGTTCATTCTAAACTGGAATGGTANAGGCTTGAACAGNCCAGCTA | |||||||||
gi|66930909|gb|CX117757.1|CX117757 EI111C09 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl AGGAATGTCTCCATCATCAGG EST sequence (targeted fragment marked with yellow): AGGTACGGTCGGAATCCGGGTCGACCACGCGTCGCAGCATTGAAGGGGACATTTTCAAAGGACAAGAATGAGTTACTTTCACAACAGTTCCAAATCAATTATGATGATGAACCGGCTATATTCCGAAAAGGGTCTTGCGTTTACCGAGACAAGGTAGAAACAATGGTGAAGACTGATCGTTGTGGAAACCCCATAAAAAGGACACGCTTAGTTATTACAAATGCAAATGTCGATATCATAGGACCCGAGTTTTGGGAAAATCATCCATATATTCTTCGAGAAGAAAAATGTAGGTATGAGAATGTTAAGAAGTTTGACATCAACCATAGGCTTCCACCTTGTAATTGGACTGTCGTTCGCATCGACATTTGTAAATTTGAGCAATTCTCGTTGATCCATTCATTTGACAAGCCAAATGATGAGGCAGCTCTAAGGTTGATGAATGCTTCTGCTTCTTTGATGATGGAGTCATTCCCTGACATTGTCTTTGGCTATGGTTTTAGCAATGAGTACAGTTTTGTGTTCCAGGATAAGACTGAACTATACCAGCGTCAGGAAAGCTTAATCCTTTCATCATGTACCTCACGTTTCACCTTGTTTTACATGATGAAGTGGAAAGATTTTTTCCCCAACAAGGACTTAGTGGAGCCACCGGACTTTGANGCAGAACT | |||||||||
gi|86903869|gb|CI302515.1|CI302515 CI302515 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone AGGAATGTCTCCATCATCAGG EST sequence (targeted fragment marked with yellow): TGTTCGCGCCCGCGCGCTCCTGGGTTCGCCGAGTGCTCGTCGACAAGCTCGCGGACGGCGCGCGCCCCGAGTCCGAGCCGCCACGCCCGCGCGTGGTGGTGGAGACGTTCCGGTACGCCATGTTCTGCCTCCTCGTGCTCATGTGCTTCGGCGAGCGGCTCGACGAGGCCGCGGTGCGCGCCATCGGCGCCGCGCAGCGCGACTGGCTCCTGTACGTCGCGAGGAAGACGAGCGTATTCGCGTTCTACCCGGCGGTCACCAAGCACATCTTCCGCCGCCGCCTCCAAATAGGCCTCGCCCTGCGACGGCAGCAGAAGGAGCTCTTTGTGCCACTCATCGATGCCCGGCGAGCGCGCAAGAACCATATCCAGCAAGCCGGCGGCCC | |||||||||
gi|29678551|gb|CB674826.1|CB674826 OSJNEe10B15.f OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe10B15 5', mRNA sequence AGGAATGTCTCCATCATCAGG EST sequence (targeted fragment marked with yellow): GAAACTAGGAAAGGACGCTGTGGAGAATGGGCCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTGATTCTGGATTTCACTGATCATGTGTGGACAGAGTGTTTTTCAAACTTGTATGGGAGGTGGATGCATCTAGATCCATGTGAAGGAGTCTATGATAATCCCCTATTGTATGAGAAAGGGTGGAACAAGAAACTAGATTATGTAATTGCTATTTCAAAAGATGGAGTACGTGATGTAACAAAACGCTACACCAGAAAGTGGCATGAGGTTCTTTCCAGGCGAATAATTACCTCGGAAGATACCGTTTCAGCTATCTTGTCATCGATAACAGGGAAATATCGCAGTGGATTGTCAATTGATGGACTCACAGCCTTAGAAAATCGTGACAAGAAAGAGTCCGAGGAACTTAGTAAAGCTGCTTATCTTGAAGTTGACACCAGCATATCTTTACCTGGAAGGCAAAGTGGTTCTGTGGAGTGGAGAAAAGCAAGGTTAGAACTGAGCCAAGTTGAATCACTCGCATGCTCATCTTGCCCTGCTCGAAAATGTGTGGATGCTCATGTTTCAAAAATATATGATGCTCTTTCTGCTCTTCTTTCACATTTTTGTGATGGAGACATCCCTAAAGAAAGAGTTATTGAAGTTTTTGACTCGCTGAAGTGCTTGATGCAAAATCTTAAAGATGCAAAGTTTAAAAGCAGGAGAGCTACATTGGACAAAAA | |||||||||
gi|88585137|gb|CI702746.1|CI702746 CI702746 Oryza sativa (japonica cultivar-group) 20 days after pollination pistil Oryza sativa AGGAATGTCTCCATCATCAGG EST sequence (targeted fragment marked with yellow): GGACGGCGCCGCCGCCGCTAGAGCTCTTCCGCCGGCGACGGCCGCCGCGGATGGGCTCGCGGTGGAGCGTCTGGATGAACCACAAACTTCTCTCCTCTCCTAGACGAAGTGACGAACCCCAGCCTCGGTGCCGGAACCCGAGGCGAGGCGACTCCGCGAGTTCCTGCTCCTCCCGCCACGGTCAGCCTCCGCCGCCGCCGCCGTATGTGCGCCGGCGAGTTCATCTCGTCTTCCACATGCACCTGGATGCTGCGTTCTTCACCGACGCCGCCCCCATCGGAGCTGTTCATGATCAAGGAGACATTCCTTTGACGTGTTGAGGAACAACGTGGTCCAAAAGGGCAAGC | |||||||||
gi|40486966|gb|BX898229.1|BX898229 BX898229 Oryza sativa library (Han B) Oryza sativa cDNA clone p806g07p5, mRNA sequence AGGAATGTCTCCATCATCAGG EST sequence (targeted fragment marked with yellow): AATCGGCATTATGGCTGCGTTTTACTTTCAGTGCATCTATATTGAGCTCTACTACATCTTTGCTAGTGTNTGGGGCCACAGGATTTACACAATTTACAGCATTCTCTTCATAGTCTTCATCATCCTCCTTATTGTTACTGCCTTCATTACTGTTGCACTGACGTACTTTCAGCTTGCTGCTGAAGACCATGAATGGTGGTGGAGGCATTCCTATGTGGAGGATCAACTGGATTTTTTGTCTATGGGTATTGTCTGTACTACTATTATGCACGATCAGATATGTCTGGATTTATGCAGACATCATTCTTCTTCGGCTACATGGCTTGCATCTGCTATGCTTTCTTCCTGATGCTGGGCATGATCGGTTTCCGTGCCGCATTGTTCTTTGTCCGTCACATATACAAATCCATCAAGTGTGAGTAATACTGTCGTCAAAGGCTGGAGAGCAGCGGAGTTGTACTCCTTTTTGGTGCCACTAAGAAGTCCCAGTATAGAAAGGTTAGCTCTCGCGCAACAGGAGCAGCTAGAGATTGCC | |||||||||
gi|300215901|gb|HO088527.1|HO088527 S338-T7promoter Subtracted cDNA library from Indica rice variety Suraksha Oryza sativa Indic AGGAATGTCTCCATCATCAGG EST sequence (targeted fragment marked with yellow): GAAGCAGGAATTGCTTAGGTTACTATTCAAGAGCTTTGTTGAAGTGCTAACTGAACGTTTGCCACCTATTTCTGCTGATGGAGATGTTCCTAATTTACGTGCTGGAGACCCGAATGTAAATTCTTCAGCCCGTGACCCTGAAGCAACAACCATGGAAATAGACAATGAAAATGGAGGAGATAACGATAGTCAGCTGAATGGTCAAAACAAGAAAATCAGTCACAATGTTGGAGAGCTTGAGCAATGGTGTCTCTGCACATTGGGCTATCTCAAGTCGTTTTCTCGTCAATATGCTACTGAGATCTGGTCCCATATTGCCATGTTGGATCAGGAGATTTTCGTTGGGAATATTCACCCTCTTATCCGGAAAGCTGCTTTCTCCGGTTTGTGCAGACCTACCAGTGAAGGGTCTCACCTTTGATTTTGACCCTTCCAGTGAGTTGGAGTTTACCTGTATTATACGCGACAAATTTTTCATCATGCTTCACTAACTGGACATGCCCAAAAGTACTCTGATGTGTACTCAGGAACTCCATCGATTCTCCTGTAATCCTGGCCCCGAGGAACACCCTTGGTGGAAAGCACTGTAACGACTTTAGGTGATTAAATTATCAGTTAGGTTTATTTGAATTGTAGTGGACTAATTTTCTTGGGTGAGTAATTGCTATGGTCTAGCTTTCTTAATTCCCTCTGCCTGTGTTAGGACAACGCCGTGTTTATTGATAAGCTGATCTGAAGCCGTCATTACTTTACATGTTGAGCTGTCGCATTGGTGGGTTTGTTACTTGGTCCAAATTCCAATGGAACTTGCT | |||||||||