| mature miRNA: AGGATGTATCACATCTAGTTT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88511233|gb|CI438739.1|CI438739 CI438739 Oryza sativa (japonica cultivar-group) callus 50ppm CuSO4 for 1 week Oryza sativa Ja AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): CCTACAAATACTTATATTTGATAACAGAGAGAGTAGTACATATATTTTCCTANTGTGAGCATTTTTCAAATTTAATATATTTCGANGAATGATTCAAATCTACTCCCTCCGTCCAGATGTGATACATCCTAGCACTACGAATCCGGATATACATGTCTAGATTTATAGTGCTATAATATGTTACATCATGTTCTACATTTGTTCCTACTAGGACGGAGTATAGTATATCCGACCGCTCGAAGAATCAGAGACATTCTTGCTTCATCTTGTGATGTACCCAACGAAGTC | |||||||||
gi|87034829|gb|CI189453.1|CI189453 CI189453 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): CTCAATCCTATAAAAAACCAATGTACTAGATGTGACACATCCTAATACAACAAATCTGGACATACATATGTCCAAATCCATTATACAAAATATGTCACATCCAGTACTAGATTTACTTTTTTTTTTAATGGAGGGAGTAACTTCTAAAGATAAATTATCTAGGTTCGTCTCTAAAATTTACATTATCTTTTTTTTACAGGAGTACTAATACTAATCACTTCCGATTAGACCAGTCCAAACTCCAAAGTGCAAACTCCAAGAAGAACCCTAAAAGTACAGCTAGACGGCCAAGGAAGCAAACAAAAAAGGAGAGATCAGCAAAGAAAGCCGAGAAAACCTGGCACAGCCAGCCAGCCAGCTACCCATGACATACACATAAAAAAAAAGAAACAAAAGCAGCTTGAGATGTCTCTTCCTCTCCGATGGNCACCCAAAAGNCCCTCTCTTTTTCTCCCGGGACCCCCTCCTCCCCAGTCTCCAACTCCACCATTTGGCTCATCCAGCCATCGCCCACTTGGCTCTAGGTTCATCCCCAAATATTTTC | |||||||||
gi|86495591|gb|CI138224.1|CI138224 CI138224 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) Oryza sativ AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): CTCCGTCCAGATGTGATACATCCTAGGTACTACGAATCCGGATATACATGTCTAGATTTATAGTGCTATAATATGTTACATCATGTTCTAGATTTGTTTTTAATAGGACGGAGTATAGTATATCCGACCGCTCGAAGAATTAGAGACATTCCTGCTTCATCTTGGTGATGTAGCCAACGAAGTCATCCAAGCCTTTCCGCGAGGACCCGCCGTCTGCCACAGACGCGCGGACGGCCTCGCCGAGCTCCTTTGCCCGCCGCCGTATTGTCATCCCTTTCTCAGGCAGCATCGCCTCCTCAATGACCTCCTGGATGGCCTCCGCCGGGACCACCTCGCTGTGCTTCTCCCATGGCCTCACGAGGAGGCCAGCCTTGAGGTATTTGCACACCAGCTCTGCGTCCCATGGCTGGTCGGAGTGCATGGGCCACGCAAGAATCGGCTTCCCGTAACTCAGGCTCTCCATGGTCGAGTTCCAGCCGCAGTGGCTCATGAACGCCGCC | |||||||||
gi|86498919|gb|CI141552.1|CI141552 CI141552 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): TTTGCGTACTCTATCCGTCCCATAAAAAACTAGATGTGATACATCCTAGTACTACAAATCAGTACATACATATATCTAGATTTATCGTACTAGAATATATCATATCTGGTCCTAGATTCGGTTTTTTATGGGACGGTGGGAGTATCGATGGATTAATTCCATGGCGGTCGGTCTGGACGAGATCATCCTCCTTTCTGCTTGAAGGAGGAGTACATCTGGACAATGGTGGAGACGAAGGTGACGAAGGCGACGAACTCGGCGACCACCGCCCATGGCACCGTGAAGTAGTTGCGCTTCACGTCCGCCCACATCATGAACAGCGGGTGCCGGCTCCTCTCCCGGAGCTCCACCACCATCCCTCCCAGGTAGCTCCGCTCCAGCTCCACCTCGCCGCTCGCCGCCCCGACCTGCCGGAACAGCCTCACCACCTCCTCCTTGCCCTCGCCGCCGCCGTTCCCGTGCACCACCGCCACCACCTCCGCCGCCGCCAGCGCCCCGGCGTCCTCCGCCGACTGCACCATCTTCGCCATGAACGACACGTACGCCGACACGTCGCGCGCCTCCGCCTTCGCCGCCGACTGCTCGAACGCCATCAGGTTCAGCA | |||||||||
gi|88837201|gb|CI078561.1|CI078561 CI078561 Oryza sativa (japonica cultivar-group) NAA treated callus Oryza sativa Japonica Grou AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): TTTTGAGGAACAAATTTGACTGCTCTTTCAACTGCAAACCATGCAACATCTTCGCGAAAAAGGAAAATCATTTGATGTTCCAAGAGAGATCACAAAAAACAATTCAGCGAGTCTCTCTGGGTTTCTGATTTTCCAAGGCCTATACTGTAGTGTTACATGCAAACTAGGTTTGATTCATCCTTCCCTTAGATGATAGTGAAGTTTGAGAAAATGTTCATCAGATTGTCGAGTGCCTCGGGATAGAATTTCCGTGCAAATAGGTAGCAAGGCCTCTTCATGCCGTTCCATAGGCACGGTCTTCTCATCACTTGGTGCTTTGCATTGCTTGTAACATGAATACTCTCATCAATGGACGAAATATTCTTAAGCAGTTCAAAGCTTGTGTCAACAGCCCTGTAAGCTTTAGGATGCCATTTTCCTTCAGACCAATCAACATGTGTCACTGACCAATTTGCAATTCCAGTTGGATCAACCATATTAAAGAGGGTTGGCAAATAGTGTTCATCAGAATAGCAGTTATGCCATTCGTTTCCCG | |||||||||
gi|88267713|gb|CI379648.1|CI379648 CI379648 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): GACAAAACTGCTGCTTATAAGCACCAATTATTCACAGATTGGAATACTAGATGTGATACATCACGTGTCAATCCGTAGGCAGAATTGATACTACAAAAAGCATCCTACTCAGACTATACTATGATTTCTAAGAATGCATAGCTATAACGTCCACTTATTCGAGCAGTAATCGCCAGGAAAATGGAACAGCATCCCTTGATCTCCAGAAGGCATCCCTCTTCTATTGCTAGACCTTGGAACTTCAGAGGGGAAATAAGCGTCGCCTACTCTGAAATCTGACACTGGGTTGTTACATCCACCAAAAGTTGGTGTCGACAGCAACATAGAATTACGAGCACTGAAAAAAGGATCCGGTGAGAACTCGGAGCCATATCGTGAAAGTGACAGATTTGCCCTGAAATGATTTGAGAGGTTTTCCCGACTTGTTGCTGTCAACCTGAACTTGA | |||||||||
gi|88902334|gb|CI374942.1|CI374942 CI374942 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): GGCAAAACTGCTGCTTATAAGCACCAATTATTCACAGATTGGAATACTAGATGTGATACATCACTGTCAATCCGTAGGCAGAATTGATACTACAAAAAGCATCCTACTCAGACTATACTATGATTTCTAAGAATGCATAGCTATAACGTCCACTTATTCGAGCAGTAATCGCCAGCAAAATGGAACAGCATCCCTTGATCTCCAGAAGGCATCCCTCTTCTATTGCTAGACCTTGGAAATTCAGAGGGGAAATAAGCGTCGCCTACTCTGAAATCTGACACTGGGTTGCTACATCCACCAAAAGTTGGTGTCGACAGCAACATAGAATTACGAGCAATGAAACAAGGATCCGGTGAGAACTCGGAGCCATATCGTGAAAGTGACAGATTTGCCCTGAAATGATTTGAGAGGTTTTCCCGACTTGTTGCTGTCAAACTGAACCTTGAATGATAGCCATCAGC | |||||||||
gi|88484819|gb|CI422090.1|CI422090 CI422090 Oryza sativa (japonica cultivar-group) callus UVB iradiated callus, immid after trea AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): GGACACTATCAAAATGGGCAGTAGTGATTCTCTTTAATCGGGCAAAATAAACACAAAGCTAGCGAATCAATACATCCCACTCACGTAACACAGCTCACCTACAGGACCCTTTGATAACTTCGCCGCAGGATTAGTTGTGATACATCCATGGTTAATCACAAGAATATCGGAGCCATCACTAATGTGATTGTAGCGAGCATCTTAATAAGAACATGGATGGAAGGCCCCGCCGTGTCTTTAAATGGATCTCCAACCGTATCACCAGTAACTGCAGCCTTGTGAGACTCANTGCCTTTGCCACCAAGAGCGCCAGTCTCGATGTACTTCTTAGCCATTATCCCAGGCACCACCAGCAGTGTTCAAGAAGAGTGCCATGACAATACCAGAAACAGTTGCAAACATAACCATAGCGGCTACAACTTNG | |||||||||
gi|88479035|gb|CI416306.1|CI416306 CI416306 Oryza sativa (japonica cultivar-group) germinating seeds Oryza sativa Japonica Group AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): CAAATTTAATATATTTTGACGAATGATTCAAATCTACTCCCTCCGTCCAGATGTGATACATCCTACTACTACGAATCCGGATATACATGTCTAGATTTATAGTGCTATAATATGTTACATCATGTTCTAGATTTGTTTTTAATAGGACGGAGTATAGTATATCCGACCGCTCGAAGAATTAGAGACATTCCTGCTTCATCTTGTGATGTAGCCAACGAAGTCATCCAAGCCTTTCCGCGAGGACCCGCCGTCTGCCACAGACGCGCGGACGGCCTCGCCGAGCTCCTTTGCCCGCCGCCGTATTGTCATCCCTTTCTCAGGCAGCATCGCCTTCTCAATGACCTCCTGGATGGCCTCCGCCGGGACCACCTCGCTGTGCTTCTCCCATGGCCCTCAGAGGAGGCCAGCCTTGAGGTATTTGCACACCAGCC | |||||||||
gi|87034821|gb|CI189445.1|CI189445 CI189445 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): CCAATGTACTAGATGTGACACATCCTAATACAACAAATCTGGACATACATATGTCCAAATCCATTATACAAAATATGTCACATCCAGTACTAGATTTACTTTTTTTTTTAATGGAGGGAGTAACTTCTAAAGATAAATTATCTAGGTTCGTCTCTAAAATTTACATTATCTTTTTTTTACAGGAGTACTAATACTAATCACTTCCGATTAGACCAGTCCAAACTCCAAAGTGCAAACTCCAAGAAGAACCCTAAAAGTACAGCTAGACGGCCAAGGAAGCAAACAAAAAAGGAGAGATCAGCAAAGAAAGCCGAGAAAACCTGGCACAGCCAGCCAGCCAGCTACCCATGACATACACATAAAAAAAAAGAAACAAAAGCAGCTTGAGATGTCTCTTCCTCTCCGATGGNCACCCAAAAGNCCCTCTCTTTTTCTCCCGGAACCCCTCCTCCCCAGTCTCCAACTCCACCATTGGGCTCATCCAGCCATCGCCCACTTGGCTCTAGGTTCATCCCCAAATATTTTCTTCTCAAGGTTTATTATAGCATTTCATTTTTTAGAAGAGTTCACAAACAGGAGTAGATACAAGAACATTCAGGATGAGTGTTGATCCAT | |||||||||
gi|44668483|gb|CR281917.1|CR281917 CR281917 Oryza sativa library (Han B) Oryza sativa cDNA clone p524f08p3, mRNA sequence AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTATAAAAATAAATAAATGGTAGAGCAATAAGTAATTTGAAATGAGCGGAGTATATATTGGTAGTGTTTAGCAATATCTATAACCAGTAGAGTATTCATTAGAGTTCAAAAAGAATTCCTATGCACTATTATGTACTCCCTCCATCTAATAAAAAATAAACATCATATTAGATGTGACACATCCTATTATAACAAATCTAAACATAAGTTTGTCTATATTTATTATAATAGGATGTATCGTATTCACGAGATTAGTTTATTTTGTGATGGAGGGAGTACGACATAATTCATCAGTCACCCCCGAAGGTACTAGCATACACTGAAATATAGGCTGTATGTTGACCATCATACCCTCTATTCAGTATGGGCCAACATATATGTAACCCACCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTACNTGAGTATCACAGGGCACCAAACACTTCGCGACACTGCC | |||||||||
gi|87038030|gb|CI190654.1|CI190654 CI190654 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): TATAATATGGACACTATCAAAATGGGCAGTAGTGATTCTCTTTAATCGGGCAAAATAAACACAAAGCTAGCGAATCAATACATCCCACTCACGTAAACAGCTCACCTACAGGACCCTTTGATAACTTCGCCGCAGGATTAGTTGTGATACATTCTCGGTTAATCACAAGAATATTGGAGCCATCACTAATGTGATTGTAGCGAGCATCTTAATAAGAACATGGATGGAAGGCCCCGCCGTGTCTTTAAATGGATCTCCAACCGTATCACCAGTAACTGCAGCCTTGTGAGACTCACTGCCTTTGCCACCAAGAGCGCCAGTCTCGATGTACTTCTTAGCATTATCCCAGGCACCACCAGCAGTGTTCAAGAAGAGTGCCATGAGAATACCAGAAACAGTTGCAAACATAAGCACAGCGGCTACAACTTTGGCTCCAAGAAGAGGCCGGCCAGTAGCGTGACCCAACATACGGAAGATAATACCAACAGCCATGGGTGATATAATGGCTAAAGCCCCCGGCCTTATCATTTCCCTCAAGGAAGCAGATGCCACAATTGCAACACAACGACCGTAATCAGGCTTCTCGTTGTAGTCCATAATGCCAGGCCTCTCAATAAACTGTCTCCCTGACTCGTTAACAACTTCTTGTG | |||||||||
gi|88514917|gb|CI442571.1|CI442571 CI442571 Oryza sativa (japonica cultivar-group) callus 50ppm CuSO4 for 1 week Oryza sativa Ja AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): CCTACAAATACTTATATTTGATAACAGAGAGAGTAGTACATATATTTTCCTACTGTGAGCATTTTTCAAATTTAATATATTTTGACGAATGATTCAAATCTACTCCCTCCGTCCAGATGTGATACATCCTAGCACTACGAATCCGGATATACATGTCTAGATTTATAGTGCTATAATATGTTACATCATGTTCTAGATTTGTTTTTAATAGGACGGAGTATAGTATATCCGACCGCTCGAAGAATTAGAGACATTCCTGCTTCATCTTGTGATGTAGCCAACGAAGTCATCCAAGCCTTTCCGCGAGGACCCGCCGTCTGCCACAGACGCGCGGACGGCCTCGCCGAGCTCCTTTGCCCGCCGCCGTATTGTCATCCCTTTCTCAGGCAGCATCGCCTCCTCAATGACCTCCTGGATGGCC | |||||||||
gi|89185527|gb|CI051855.1|CI051855 CI051855 Oryza sativa (japonica cultivar-group) cold treated callus Oryza sativa Japonica Gro AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTAAGCACCAATTATTCACAGATGGAATACTAGATGTGATACATCACTGTCAATCCGTAGGCAGAATTGATACTACAAAAAGCATCCTACTCAGACTATACTATGATTTCTAAGAATGCATAGCTATAACGTCCACTTATTCGAGCAGTAATCGCCAGCAAAATGGAACAGCATCCCTTGATCTCCAGAAGGCATCCCTCTTCTATTGCTAGACCTTGGAACTTCAGAGGGGAAATAAGCGTCGCCTACTCTGAAATCTGACACTGGGTTGCTACATCCACCAAAAGTTGGTGTCGACAGCACATAGAATTACGAGCACTGAAACAAGGATCCGGTGAGAACTCGGAGCCATATCGTGAAAGTGACAGATTTGCCCTGAAATGATTTGAGAGGTTTTCCCGACTTGTTGCTGTCAAACTGAACCTTGAATGATAGCCATCAGCTGAACACAACTCATTTGGAGCAAAAGAGTCTGTTGGCAACCGGAACAAACCAGCAAGGCCCACCGGCACTTTCACGTCATCCCGTGGTATGATCCTGCTGCGATACTCTGCTGGTTCTGGT | |||||||||
gi|89183890|gb|CI046455.1|CI046455 CI046455 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): TTATATTTGATAACAGAGAGAGTAGTACATATATTTTCCTACTGGTGAGCATTTTTCAAATTTAATATATTTTGACGAATGATTCAAATCTACTCCCTCCGTCCAGATGTGATACATCCTAGTACTACGAATCCGGATATACATGTCTAGATTTATAGTGCTATAATATGTTACATCATGTTCTAGATTTGTTTTTAATAGGACGGAGTATAGTATATCCGACCGCTCGAAGAATTAGAGACATTCCTGCTTCATCTTGTGATGTAGCCAACGAAGTCATCCAAGCCTTTCCGCGAGGACCCGCCGTCTGCCACAGACGCGCGGACGGCCTCGCCGAGCTCCTTTGCCCGCCGCCGTATTGTCATCCCTTTCTCAGGCAGCATCGCCTCCTCAATGACCTCCTGGATGGCCTCCGCCGGGACCACCTCGCTGTGCTTCTCCCATGGCCTCACGAGGAGGC | |||||||||
gi|44667396|gb|CR280830.1|CR280830 CR280830 Oryza sativa library (Han B) Oryza sativa cDNA clone y729a11p3, mRNA sequence AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTGTGTGTTAACTCAACAGACAATCATTTCACATACAGACGCATATATGCCTACAAAATCATATTATTCGTGTCCAAAATTGAATCAACAGCTCAACCGTATACTGTGGATCCGCGGAGACTCACTAATTACAGCGTCTAACAGATGATAGTAGATCACGGAACTAGCGCGAAACAACGATTGTCATAAAGGACCATTTGTAAACAAGTACTCAGGTTAACCGGTGTTCTTGCCAACTGACGGTATCATGAATCATCAGACTTGCACTTTCATCTGGCAGAACTAACAAATCCAATATACACTCACCAACAATCCGACAGGGTCCACAAGCTATTTGTGCCTCCAATAATAGTTTTGGCATCATATGATTCAACCAAGGACCTTCCTGATTTCTTCAACAAGTTGAGCTCTTCTAGAGGGATCCATCTTATCTAGTAACATGGAAAGACCTGTGGCAGGCTTGCAATCTGACTGGATCTGAAGACTGAACGGATGGGATATCTTGAGCTTAGATATGATATATCCTGTAATTCCAGGGATCCACCAGCAACAACTATCTCTCTCCACCACGGTTTTACACCAAACCCTTGTACGCCCACGGGTGCGCAACCCCCGCCAC | |||||||||
gi|88503792|gb|CI431298.1|CI431298 CI431298 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): AATCCGAATTCTACAAATACTTATATTCGATAACAGAGAGAGTAGTACATATATTTTCCTACTGTGAGCATTTTCCAAATTTAATATATTTTGACGAATGATTCAAATCTACTCCCTCCGCCCAGATGTGATACATCCTACTACTACGAATCCGGATATACATGTCTAGATTTATAGTGCTATAATATGTTACATCATGTCCTAGATTTGTTTTTAATAGGACGGAGTATAGTATATCCGACCGCTCGAAGAA | |||||||||
gi|88693513|gb|CI737088.1|CI737088 CI737088 Oryza sativa (japonica cultivar-group) 1 nuclei stage pistil Oryza sativa Japonica G AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTAAATGTACATATGGGTTGAAAATTTTGCACATAATTTATATATCCAATCATACCAGGTACTCTCTCCATCCCATAAAAAACCAACCTAATACCGGATGTGATACATCCTAGTATTACGAATCTGGACATCCCTCCGTCCCTAAAAAGCTAACCTAGTAGACACATCCGNGTAACTAAGGGTTNGGGTTTTTTATGGGGGAAATTGGGGAGGAAGTAAGGAATAAGCACATTATTTTATTATTGTGATATTGTCACAGTGTGTTAAGAACAAACTGAGTTAAATTCGGTTAGTTTTCTTGTATGGAGATTGGCTCCAAAGAAAAACAAGAGGTGTGGATTGGATTTGGTTTCGCTGT | |||||||||
gi|88331544|gb|CI675882.1|CI675882 CI675882 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro AGGATGTATCACATCTAGTTT EST sequence (targeted fragment marked with yellow): ATTGCCATCCTCCTCCACCGCGCCGNTATCCTACAAGAAAAATGAATTTGTGATTTAGAAGTAAAATAAATGCGTACAATATCACTGACCCTTGAAGTCAGATGTGATACATCTTTGAGTGTTGATCTTATAATGCTGGCTATAATCCAATGTCAGATGTTATATGTTGCTTGCTCATGGATACAAAGCAGTGGATTTATAATGTCGACGGCAATGCCGCTTAATGTACAATCTGTTTTTA | |||||||||