| mature miRNA: AGGGATTAACTGAACAAAGCC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|86499079|gb|CI141712.1|CI141712 CI141712 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa AGGGATTAACTGAACAAAGCC EST sequence (targeted fragment marked with yellow): CAATATGAGACGATGCATCATAAAAACTAGGGAATAACAAGATCATTCCATTAAGGCTTTGTTCAGTTAATCCCTCCCACAAGGGAATTGAAGGGGTGTGGAATTAATCCCCTCCAATTCCCTCCCTCATGGGGATTAACCAAACAAGCCCTAAAAGAGAAGGTTATACCTCTGGGAACTGATCAACAGATGCAATGAATAAGTTTAGCATATCTCCTTGATCAGCAGCATCTTTGTTAAGACAAGACACAAGTGTCGCAGCATTAGCCAGGACAGTACATGATGAAGCCGTATTTATTAGCCTTCTCAACAAAGGAGAGTGCACAGTTCTATGCTGAGAAGACATGGTGTCTGTATCCTCAAGAACAAGCTTCTGCAGTTGCTTTCCAGCCGTCAGGATAGCTTGGACGACCCCAACAAACTCTTTCGCTGTGGCTTTGCAGTGGAAAATCCTTGTTATTCCTCTTTGTATATCAAGAGTTCCTGCCAGCATTCTCAAAACGGATGAAAGAATGGTGCTCAGATCACTTCTCACAGAA | |||||||||
gi|89161779|gb|CI100939.1|CI100939 CI100939 Oryza sativa (japonica cultivar-group) Panicles one day after flowering Oryza sativa AGGGATTAACTGAACAAAGCC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTGGAGGCCAACTCGTTACTCATATTTATTAGCATTTCGATCACATTTTCCTCAGTGATAATCCTTCCCAGTCACAAGTATATCCGTAGCATATCAAGTTAACCATTATACTCTAATCTAAACCTCTATACAGAACACCAAACATAGCTATATACTTATATGGCTTATACTTTAGTCCTTACCAAGAACTCTTCTATCCGGAAATCCTTTTTTTTTTCTGTCAAATCTCTTTGTACTTTATTCTTTTTCCAATCCCTTTTAGGCCTTGTTCAGTGAATCCCTCCCACAAGGGGATTAATTTCACAGCCTTAAGAAATTAGAACGTAGTCTACATTAGAGGCCGATGATGACTTAGGAGACGAGCTGTGCCGGCTGAGACCTTCCCTCACCTTGCCGTACTGTTCTGCTTCATGCTGGAACGCTGAAACAAGATCCTGGAGCTCGAGCTTCCTCACCTTGACCTTCTCATTGGTCACTGGATTTTGTAACCCAAGATAGAGTATTCCTACCCCAATAAGGACGAAGCCTACAAAGAAGAG | |||||||||
gi|44665777|gb|CR279211.1|CR279211 CR279211 Oryza sativa library (Han B) Oryza sativa cDNA clone y707a07p3, mRNA sequence AGGGATTAACTGAACAAAGCC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTAAATGTACTAAAATGATTTAAGCATGTATCAAATCTACACCTCTGATTTTAAGTCAGTCAGCTCAGGCCTCACCCGAGATGCTCAACTACAGAAGGCCAAAATGACAGATGATGCCTTAGTCTAGTTAATCCCTTAGAGTACATAGGAGAACCTTATAAACACTGCACAGAGTACATTCTTGGTAAAACTAAATCCACACAAAAAAAAGGCCAACAAACACCAGCATTTCAGCGCCTCTTTCTTGCTTTCCTATTCTGCCAGCCAGTGGCATTCTCGACGCGGCATTGCCAACCCAGGCTAGCATACAACACACCCGACCAACAGGAAACCAACCGGCGACCCAAGCGACCCCACTATATCACCCCCAAAAGGATCTCTAAACCCCAAATACAAAACCTCTCCTGTCTGCGGGACAGGATCTCCTCAACCCACAGACCTACTCACAGCTGGACACACCACTCGGGCAGATCGACGTAACACGCCTCCCAGAAAAAAGGCAGGACCACAAGGAGAGGAACCAAAGGAAAAGATGACAAAACGGACACGGGAAACGACCCAGCAACCCTCTGACCGGAAACATATGGCCCACCCACAGCTGAAACATGCCGAAAAATCCACAACCAACCAAACAACCAACGATAATGCCCAAAAATACCACGAAAGGTGACACACCCAGCCAAACACATACGAAACCC | |||||||||
gi|86479486|gb|CI122119.1|CI122119 CI122119 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo AGGGATTAACTGAACAAAGCC EST sequence (targeted fragment marked with yellow): TTCTGGTCAAATCTCTTTGTACTTTATTCTTTTTCCAATCCCTTTTAGGCCTGGTTCAGTGAATCCCTCCCACAAGGGGATTAATTTCACAGCCTTAAGAAATTAGAACGTAGCCTACATTAGAGGCCGATGATGACTTAGGAGACGAGCTGTGCCGGCTGAGACCTTCCCTCACCTTGCCGTGCTGTTCTGCTTCATGCTGGAACGCTGAAACAAGATCCTGGAGCTCGAGCTTCCTCACCTTGACCTTCTCATGGGTCACTGGATTTTGTAACCCAAGATAGAGTATTCCTACCCCAATAAGGACGAAGCCTACAAAGGAGAGAAGTCCTGCAAACAAGCCAAAAGCGTATGGAGTATTCTGCGCTCCCGGTATGCCATCAACATTGATTCCAAAAAGGCCAGTGATTATGGATAAAACCATGCCGCCACCCCCAAAAATAGCCAAATTGTGGGTGATACGAAGGCTTCTATCTTGTAACCATGCTCGAACAGTGCTTTGCATAACATCCTGAATAGTGAACAAGCGGCCACGGACAGCTTCCTGCTCCTCCAACATTTCTCTTGTGTCCTTTCTAATGCTATCTAAGATAACTCTTGTGGTATTTCCCCTTAAATGTCTAAGGAGCTCAATTATGATCTCTTCCCTT | |||||||||
gi|58662054|gb|CK050734.1|CK050734 50844rsiceh_22193.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G AGGGATTAACTGAACAAAGCC EST sequence (targeted fragment marked with yellow): CGGCACGAGGGAGAGAGAACTAGTCCGAGTTTTTTTTTTTTTTTTTTTTTTCTGTCAAATCTCTTGGTACTTTATTCTTTTTCCAATCCCTTTTAGGCCTTGTTCAGTGAATCCCTCCCACAAGGGGATTAATTTCACAGCCTTAAGAAATTAGAACGTAGTCTACATTAGAGGCCGATGATGACTTAGGAGACGAGCTGTGCCGGCTGAGACCTTCCCTCACCTTGCCGTGCTGTTCTGCTTCATGCTGGAACGCTGAAACAAGATCCTGGAG | |||||||||
gi|27921074|gb|CB096882.1|CB096882 AF53-Rpf_09_P07_T7_032.ab1 IRRI Drought Stress Panicle Library Oryza sativa Indica Group cDNA AGGGATTAACTGAACAAAGCC EST sequence (targeted fragment marked with yellow): CATCATACAGGTGTCCAGATCATTAGGCGATGCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCTGAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAACCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAGCAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGTAAGATTCTGCACATTTAACTTGTTTATCTACTGCTTCACATTCTGGTCTCTGCTGTTGCCTAAGGGCTTGTTCAGTTAATCCCTCTCACAAGGGGATTGAGGGGGATTTGGAGGGAATTTATTCCACACATATTGTGGTGTGGAATTATTGCCCCTCAATACTCTCCAATTCCCTCCTCTTGAGGATTAGACGAGCAAGGCCCAAGTGATCTTAAACAATTTGCAATATTTTATGACCGGAGTTTTTCCCACTGAATTTTTTGTTAAGGCTTCAGGACATGAACGGTGAACCTTGGAACCTTATTTCACCTGGAAATAATGCCTTGATGTATTTTGCTATAATATTTACAATCAAATGTATGCATTAAAGTTTCAGGA | |||||||||
gi|89192204|gb|CI393561.1|CI393561 CI393561 Oryza sativa (japonica cultivar-group) seed Oryza sativa Japonica Group cDNA clone J AGGGATTAACTGAACAAAGCC EST sequence (targeted fragment marked with yellow): GAATGTACTAAAATGATTTAAGATGTATCAAATCTACACCTCTGATTTTAAGTCAGTCAGCTCAGGCCTCACCCGAGATGCTCAACTACAGAAGGCCAAAATGACAGATGATGCCTTAGTCTAGTTAATCCCTTAGAGTACATAGGAGAACCTTATAAAACCTGAGAGAGTACATTCTTGTAAAACCAAATACAACAAAAAAAAGGCAACAAAACAGATTTAGCGCCTCTTCTTGCTTCCTTTTGCAGCAGTGGATTTTGACGGGCTTGCAACCAGGTAGATAAACACACCGACAAAGGAAACAACGGAGACCAGCGACCCATATTTCCCCACAAGTCTCTTAGCCAATTCAAACTTCTGTTGGGGAGGTCTCTCAGCAAGAATATCAAGTGGAAACATGGGCGTTGAGTAAGCCTCCTGAAGTGCGGCCTTTGTGGGA | |||||||||
gi|88203270|gb|CI203119.1|CI203119 CI203119 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft AGGGATTAACTGAACAAAGCC EST sequence (targeted fragment marked with yellow): GATGTACTAAAATGATTTAAGATGTATCAAATCTACACCTCTGATTTTAAGTCAGTCAGCTCAGGCCTCACCCGAGATGCTCAACTACAGAAGGCCAAAATGACTGATGATGCCTTAGTCTAGTTAATCCCTTAGAGTACATAGGAGAACCTTATAAAACCTGAGAGAGTACATTCTTGTAAAACCAAATACAACAAAAAAAAAGGCAACAAAACAGATTTAGCGCCTCTTCTTGCTTCCTTTTGCAGCAGTGGATTTCGACGGGCTTGCAACCAGGTAGATAAACACACCGACAAAGGAAGCAACGGAGACCAGCGACCCATATTTCCCCACAAGTCTCTTAGCCAATTCAAACTTCTGTTGGGGAGGTCTCTCAGCAAGAATATCAAGTGGAAACATGGGCGTTGAGTAAGCCTCCTGAAGTGCGGCCTTAGTGGGAACACGGTATGTGATAATGGCAGGAGAGCCCTGAAACTTGCCCTGCACTTTGGTCTCCAAGATGA | |||||||||
gi|88213820|gb|CI213669.1|CI213669 CI213669 Oryza sativa (japonica cultivar-group) same as Lib 33(supermix) Oryza sativa Japonic AGGGATTAACTGAACAAAGCC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTGAATGTACTAAAATGATTTAAGATGTATCAAATCTACACCTCTGATTTTAAGTCAGTCAGCTCAGGCCTCACCCGAGATGCTCAACTACAGAAGGGCAAAATGACAGATGATGCCTTAGTCTAGTTAATCCCTTAGAGTACATAGGAGAACCTTATAAAACCTGAGAGAGTACATTCTTGTGAAACCAAATACAACAAAAAAAAGGCAACAAAACAGATTTAGCGCCTCTTCTTGCTTCCTTTTGCAGCAGTGGATTTTGACGGGCTTGCAACCAGGTAGATAAACACACCGACAAAGGAAACAACGGAGACCAGCGACCCATATTTCCCCACAAGTCTCTTAGCCAATTCAAACTTCTGTTGGGGGGGTCTCTCAGCAAGAATATCAAGTGGAAACATGGGCGTTGAGTAAGCCTCCTGAAGTGCGGCCTTTGTGGGAACACGGTATGTGATAATGGCAGGAGAGCCCTGAAACTTGCCCTGCACTTTGGTCTCCAAGATGAAGTTGTGGGAAGCAGTA | |||||||||
gi|86481037|gb|CI123670.1|CI123670 CI123670 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo AGGGATTAACTGAACAAAGCC EST sequence (targeted fragment marked with yellow): TAGGAGGCCAACTCGTTATCATATTTATTAGCATTTCGATCACATTTTCCTCAGTGATAATCCTTCCCAGTCACAAGTATATCCGTAGCATATCAAGTTAACCATTATACTCTAATCTAAACCTCTATACAGATCACCAAACATAGTTATATACTTATATGGCTTATACTTTAGTCCTTACCAAGAACTCTTCTATCCGGAAATCCTTTTTTTTTTCTGTCAAATCTCTTTGTACTTTATTCTTTTTCCAATCCCTTTTAGGCCTTGGTTCAGTGAATCCCTCCCACAAGGGGATTAATTTCACAGCCTTAAGAAATTAGAACGTAGTCTACATTAGAGGCCGATGATGACTTAGGAGACGAGCTGTGCCGGCTGAGACCTTCCCTCACCTTGCCGTGCTGTTCTGCTTCATGCTGGAACGCTGAAACAAGATCCTGGAGCTCGAGCTTCCTCACCTTGACCTTCTCATTGGTCACTGGATTTTGTAACCCAAGATAGAGTATTCCTACCCCAATAAGGACGAAGCCTACAAAGAAGAGAAGTCCTGCAAACAAGCCAAAAGCGTATGGAGTATTCTGCGCTCCCGGT | |||||||||
gi|38471722|gb|CF955853.1|CF955853 4491rsiceb_9823.y1 Oryza sativa cv. PA64s leaf cDNA library Oryza sativa Indica Group cDNA 5' AGGGATTAACTGAACAAAGCC EST sequence (targeted fragment marked with yellow): GCACGAGGCTACTAAACCTGAAGTTTCGACTTTGGAATACATGAATTAATAGAATTCATGATTTAGTTCAAACCTACCTATAAAATTCTTTCATTAAAGCCTTATTCAGTTAATCCCTTGTCCAAGGAGGTTGAGAGGGACTGGAATTAATACTCCCTTATCCACTCCAATCACTTGGTCATTGGGACTAAACAAACAAGCCTAGAGTAAGCCTAAGCGATTGTGGAAAATCCAAATAACTCCATATAAGTTGCTGGTCGTTTCATTCTCTCCCTACAACTTAATTTCATACAAGATATTCTTCATAAGTTCTTTTTAAAAAAAAAAAAAAAAAA | |||||||||
gi|88905912|gb|CI089498.1|CI089498 CI089498 Oryza sativa (japonica cultivar-group) Cd treated callus Oryza sativa Japonica Group AGGGATTAACTGAACAAAGCC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAGGCCAAAATGACAGATGATGCCTTAGTCTAGTTAATCCCTTAGAGTACATAGGAGAACCTTATAAAACCTGAGAGAGTACGTTCTTGTAAAACCAAATACAACAAAAAAAAGGCAACAAAACAGATTTAGCGCCTCTTCTTGCTTCCTTTTGCAGCAGTGGATTTTGACGGGCTTGCAACCAGGTAGATNAACACACCGACAAAGGAAACAACGGAGACCAGCGACCCATATTTCCCCACAAGTCTCTTAGCCNATTCAAACTTCTGTTGGGGAGGTCTCTCAGCAAGAATATCAAGTGGAAACATGGGCGTTGAGTAAGCCTCCTGAAGTGCGGCCTTTGTGGGAACACGGTATGTGATAATGGCAGGAGAGCCCTGAAACTTGCCCTGCACTTTGGTCTCCAAGATGAAGTTGTGGGAAGCAGTA | |||||||||
gi|88837854|gb|CI371432.1|CI371432 CI371432 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone AGGGATTAACTGAACAAAGCC EST sequence (targeted fragment marked with yellow): GAGGGCAACTCGTTACTCATATTTATTAGCATTTCGATCAAATTTTCCTCAGTGATAATCCTTCCCAGTCACAAGTATATCCGTAGCATATAAAGTTAACCATTATACTCTAATCTAAACCTCTATACAGATCACCAAACATAGTTATATACTTATATGGCTTATACTTTAGTCCTTACCAAGAACTCTTCTATCCGGAAATCCTTTTTTTTTCCTGTCAAACTCTCTTTGTACTTTATTCTTCTTCCAACTCCCTTTTAGGCCTTGTTCAGTGAATCCCTCCCACAAGGGGATTAATTTCACAGCCTTAAGAAATTAGAAGGTAGTCTACATTAGAGGCCGATGATGACTTAGGAGACGAGGTGTGCCGGCTGAGACCTTCCCTCACCTTGCCGTGGTGTTCTGGTTCATGGTGGAACGCTGAAACAAGATCTGGAGCTCGAGCTTCCTCACCTTGACCTTC | |||||||||
gi|88986847|gb|CI033956.1|CI033956 CI033956 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c AGGGATTAACTGAACAAAGCC EST sequence (targeted fragment marked with yellow): GTACTAAAAGGATATAAGATGTATCAAATCTACACCTGGATTTTAAGTCAGTCAGCTCAGGCCTCACCCGAGATGCTCAAGTACAGAAGGCCAAAATGACAGATGATGCCTTAGTCTAGTTAATCCCTTAGAGTACATAGGAGAACCTTATAAAAGCTGAGAGAGTACATTCTTGTAGAACCAAATACAACAAAGAAAAGGCAATCAAAAGAGATTGTAGCGCCTCTTCTGGCTTCCTTTGGCAGCAGTGGATGTTGACGGGCTTGCAAGCAGGTAGATAAACACACCGACAAAGGAAACAACGGAGACCAGCGACCCATATTTCCCCACAAGTCTCTTAGCCAATTCAAACTTCTGTTGGGGAGGTCTCTCAGCAAGAATATCAAGTGGAAACATGGG | |||||||||