| mature miRNA: AGGTGTAAGTGGTTAACCCGT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88834090|gb|CI077571.1|CI077571 CI077571 Oryza sativa (japonica cultivar-group) NAA treated callus Oryza sativa Japonica Grou AGGTGTAAGTGGTTAACCCGT EST sequence (targeted fragment marked with yellow): TTTTTCGTGTTAAAAGCCATACATTCCTGATTTCGTGTTAAAAAGCCATACATTCCAACCAAATTTCCCCCAAAAAAAGAGGCTCAAAAGAAGCAAAGAACACTACCGGTCTAACACTAAAGGTCTACTACTACTACTACCAGTGGATGCTCTAGAGATTTGGATTTTGCTTGAATGTCCCACCTATGGGTTTACTGGTTAAACACTTACACCACCAGCCTAGTGCTTACCATCATAACCAAGTATGCTACTCCAGGCTTCCAGCTAATTTAAGTACCATAAGCACCTGATTGCTGCTGATCTTGCTTTAGTTTACAAAAAGAGCCGATCAAAAGCAAGATCGAGCAAGCAGCAACATGGCTCTAATTAAGCATCTGTCCAGGCTGCAAAAACAGGGAGATGAGCAATGGCACTCGGCGGCCTCATCACGTGAGCTGCGGCCGGCGCCGGCATCGGCATCC | |||||||||
gi|86531854|gb|CI172060.1|CI172060 CI172060 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo AGGTGTAAGTGGTTAACCCGT EST sequence (targeted fragment marked with yellow): GTCCCAAACTCCATTGCTACTCTTTTATTCATATATACTGACGCAGGTGACGTACACTCTACACATGTAAATAATAGCTTACAAATTACAACACCGAGGAGGAGGGATATTACTGAGAGCCATAGAGGAATGAGAAGAAGACGAAAGTAAGTACCGTAGATTAATGAGGGTGTAAGTGGCTAATCCAGGAACCTACTTATAAATTAAATAAATAAACATTTAATCTATAAATGGATTCGCGGGTTAGCCACCTACACCTTTACCTTAACCTTAGATACCACCGGTACAGCGCAACGCTCAAAAGTGAAGACTCCTCGAAGGTTGGAACCACACAATACACGACGCCCACGCGTACGCAGTAGAGAGGAGGATAGAGCTAGCTCGCTCTGGTCAACACGTGCACGTCCATGGCACCGGACGGTCATGGCGAGCGGCACTGGAGAACAGTGGGCGGGTGGAAGCTCTGCGCACTGAGTTGCTCGTAGAACATGTTGATGAACTCCTCCGCCCTGT | |||||||||
gi|88845439|gb|CI084364.1|CI084364 CI084364 Oryza sativa (japonica cultivar-group) ABA: Abscic Acid treated callus Oryza sativa AGGTGTAAGTGGTTAACCCGT EST sequence (targeted fragment marked with yellow): ACCAGTGGATGCTCTAGAGATTTGGATTTTGCTTGAATGTCCTACCTATGGGTTTACTGGTTAAACACTTACACCACCAGCCTAGTGCTTACCATCATAACCAAGTATGCTACTCCAGGCTTCCAGCTAATTTAAGTACCATAAGCACCTGATTGCTGCTGATCTTGCTTTAGTTTACAAAAAGAGCCGATCAAAAGCAAGATCGAGCAAGCAGCAACATGGCTCTAATTAAGCATCTGTCCAGGCTGCAAAAACAGGGAGATGAGCAATGGCACTCGGCGGCCTCATCACGTGAGCTGCGGCCGGCGCCGGCATCGGCATCCAGGGGTTCATGGCGGCGAGGCTGACGGCGGTGGGATGATGCTTGGCGTAGAGCATGGCGAGGCCAAGCCTCTCAGGGCTCCCCTCCCTCGAGTTGCTCAGGCTAGTCACCAGCGAAGACGAGTTCGAGAAGTTGATGCCACTGATCTTCCCTCCCGGGACATCGATCTCGTCAGCTGCCGCCGACTCGACGT | |||||||||
gi|86828525|gb|CI278627.1|CI278627 CI278627 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa AGGTGTAAGTGGTTAACCCGT EST sequence (targeted fragment marked with yellow): TAAAAATACAACCCACAAACTTGCATAGTTTCACACACCCAATCAACAAGCTTTTTGGCTTTACTAGCTTAGCTAGGCTAGCTAGCACTGGTTGGTGACAAACCCTACACTGTACATCATGTAGTGATGACAACTGTACATTTTGGCAATCAATCATCCAAAAGGAAAGAGGATCTAGCAAATTATCCAATTGATTGGAGCTGCATATGCATAGATAATAAGCATGTTGTCTCTATTTGAGCTATAGTAGAATTAAAAGTTGCATCCATGGCCCCACATATGCCCTACCCTCCTTACCCTTATCTAGCTACCATGCTGGCCCCAGTCCCCTTGTTGCACGGATCATGGCTGGATCGAATCGATGGACGATCAATCATCGATTGGTGTTAGGTTGATCAGTAGCTTAATTCGTCGTCATTCTCAATGCAGTGTCGATCTGTGTAAGCGAGGAGCCTAGCTCAGCTTTAGGGTGTAAGTGGGTAAGCCGCAAACCCACTAATAGGTTAAAGTAAGTGGGTTCGAAACTTACTTTTATCTATAAGTGAGTTTCACGGTTTAACCACTTACACCCTTAACTTAGCTTAGGCGAGTGGGTTAGCGACAGGTGGTGGCTGCCGGTGGAAGGGGGCCAGGCGGTTGTCGCTGAGGCG | |||||||||
gi|117246575|gb|CT863200.1|CT863200 CT863200 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD AGGTGTAAGTGGTTAACCCGT EST sequence (targeted fragment marked with yellow): AACCGGCGAGCCACACGCGTGGGGGGGCAGGCTCCCGAACCGTGGAACCCCCGGGGCTGCAGGAAAGGCGAGACCCATGGAGCCGTGGCGGGGTGCTCAAGAACATATCATCTAGTATCATCGCCCTTCGTCACGGAGAAAGGAGCTCATCATTCGGACTTCAGATCAGCAACTAAAGATGATCCAGATCGGGTCGTAGAACAACGAAGACAAGAAGTTAAGATCATACAGGGATGGATAGATCAGTACAATGAGGACCTTGCACAGATATCAAAATGAGAAGATGCAGTTACTGCGACAGACAATCGAAACATGAGACTGTCTACACAGTAATCAACTGTTTTTGGCTACATGGAAAAAATAAGGAAAAGGAATTTTTCTTTCTTGCAGGCTGTTAGACAGAAAATTAAATTAAGGTAACATACAGTGGAAACTCAATAAGTCACTCAGAAAGGTTGTAAGCGGCTAACCCGCGAAACCCACTTATAGGCCAAAATAAGCCACAAACTCGTTTATTTTGACCTATAAGTGGGTTCGCGGCTTACCCACTTACACCCAGTCAGAATCAGAAATTGTGACACCCAT | |||||||||
gi|88842160|gb|CI081416.1|CI081416 CI081416 Oryza sativa (japonica cultivar-group) ABA: Abscic Acid treated callus Oryza sativa AGGTGTAAGTGGTTAACCCGT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTAAATGGATAAGTGTCTTATTTTGATTTATAAGTGTGTTTCGTGGGTTAGCCACTTACACCCTTTGTCTACCCCATCTCCGCAAATTATACAACATCCAGGTGACTACATATACAGTTTGAAATTACGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACACGGTGACACCAACACACACGAACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGGAAGACCAACCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTGCGACGCCTGCACGATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGAGCATCCACCAACCAGGTTCAACCCGTGAGGCAATCATCGAGTTTGTTGGCT | |||||||||
gi|29643834|gb|CB648841.1|CB648841 OSJNEb12H02.f OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb12H02 5', mRNA sequence AGGTGTAAGTGGTTAACCCGT EST sequence (targeted fragment marked with yellow): AGAAGACCCCCATGGCCTCAGTGGTTGGGGATGGCAGGCCTGCACAGAAATGGTCATGCCGATGACGATATCGAACGAGAGCATGTTCCCTCCATTCACCTTCACTTATGAGGGGAAATCTGATGACTGTTTCCAGAGCTACGGTGTTCGTCCGAGACCACACTGGATCACCACTGAATATGGTGGAAATAGAATTGACCTGGTGCTCAAGAGGTTTGGGAGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGGGGTGCTCAAGAACATATCATCTAGTATCATTGCCCTTGTCACGGAGAAAGGAGCTCATCATTTGGACTTCAGATCAGCAACTAAAGATGATCCAGATTGGGTTGTAGAACAACGAAGACAAGAAGTTAAGATCATACAGGGATGGATAGATCAGTACAACGAGGACCTTGCACAGATATCAAAATGAGAAGATGCAGTTACTGCGACAGACAATCGAAACATGAGACTGTCTACACAGTAATCAACTGTTTTTGGCTACATGGAAAAAATAAGGAAAAGGAATTTTTCTTTCTTGCAGGCTGTTAGACAGAAAATTAAATTAAGGTAACATACAGTGGAAACTCAATAAGTCACTCAGAAAGGTTGTAAGCGGCTAACCCGCGAAACCCACTTATAGGCCAAAATAAGCCACAAACTCGTTTATTTTGACCTATAAGTGGGTTCGCGGCTTACCCACTTACACCCAGTCAGAATCAGAAATTGTGACACCCC | |||||||||
gi|88549514|gb|CI479408.1|CI479408 CI479408 Oryza sativa (japonica cultivar-group) 35 days after pollination pistil Oryza sativa AGGTGTAAGTGGTTAACCCGT EST sequence (targeted fragment marked with yellow): AGTCAAAATAAACGGGTTACCCACTTACACCTTTATCAATCAGATCACATCACAGAGTATATTGCTGATTTGCTGTGTCCACAACCAAGTCCTATATAGCGTGGTCAATACCTCGGGTACACTAACTAGCCAAAAGTCAAAAGTCATAACACAATCTCTCAACCAAACATATGCATCCTATCAAGAATAAGACCAATACAAACGAAGCTAGGGATCGCCACCAGATATTGTTTGACTTGATCAAACTTTTCATCATTGTCAACTTGATCTTCAATTTCTCGAAGTATATGTTCCTGCTCATCTAAGCAGTGGCACAGCTTGTCAAAAGTCGATCTCATCTTTCTATAGAGCTCGTCTTTCTTGCTTTCATGGTCTGGAATGTCAGCGGGCCTAAAAGCTCCCTCCTTGTTCTTCTCTAATTGCCTTTTGCAT | |||||||||
gi|88532072|gb|CI461530.1|CI461530 CI461530 Oryza sativa (japonica cultivar-group) 35 days after pollination pistil Oryza sativa AGGTGTAAGTGGTTAACCCGT EST sequence (targeted fragment marked with yellow): AGTCAAAATAAACGGGTTACCCACTTACACCTTTATCAATCAGATCACATCACAGAGTATATTGCTGATTTGCTGTGTCCACAACCAAGTCCTATATAGCGTGGTCAATACCTCGGGTACACTAACTAGCCAAAAGTCAAAAGTCATAACACAATCTCTCAACCAAACATATGCATCCTATCAAGAATAAGACCAATACAAACGAAGCTAGGGATCGCCACCAGATATTGTTTGACTTGATCAAACTTTTCATCATTGTCAACTTGATCTTCAATTTCTCGAAGTATATGTTCCTGCTCATCTAAGCAGTGGCACAGCTTGTCAAAAGTCGATCTCATCTTTCTATAGAGCTCGTCTTTCTTGCTTTCATGGTCTGGAATGTCAGCGGGCCTAAAAG | |||||||||
gi|88444319|gb|CI555036.1|CI555036 CI555036 Oryza sativa (japonica cultivar-group) root of seedling gamma-irradiated (9.5min), a AGGTGTAAGTGGTTAACCCGT EST sequence (targeted fragment marked with yellow): CCCTTTGAATTGCGCTTCCTTATTTCCTTCGTTCAAAACGATCATACAAGTAGTAGCGGTCTCTCTAACATCAATGAGGTCAATCATTAAGGATAAGTGGCTAACCCATGAACCCACCTATAAGTCAAAATAAACGGGTTACCCACTTACACCTTTATCAATCAGATCACATCACAGAGTATATTGCTGATTTGCTGTGTCCACAACCAAGTCCTATATAGCGTGGTCAATACCTCGGGTACACTAACTAGCCAAAAGTCAAAAGTCATAACACAATCTCTCAACCAAACATATGCATCCTATCAAGAATAAGACCAATACAAACGAAGCTAGGGATCGCCACCAGATATTGTTTGACTTGATCAAACTTTTCATCATTGTCAACTTGATCTTCAATTTCTCGAAGTATATGTTCCTGCTC | |||||||||
gi|88511829|gb|CI439335.1|CI439335 CI439335 Oryza sativa (japonica cultivar-group) 4 days after transferring callus Oryza sativa AGGTGTAAGTGGTTAACCCGT EST sequence (targeted fragment marked with yellow): CGTGTTAAAAAGCCATACATTCCAACCAAATTTCCCCCAAAAAAAGAGGCTCAAAAGAAGCAAAGAACACTACCGGTCTAACACTAAAGGTCTACTACTACTACTACCAGTGGATGCTCTAGAGATTTGGATTTTGCTTGAATGTCCTACCTATGGGTTTACTGGTTAGACACTTACACCACCAGCCTAGTGCTTACCATCATAACCAAGTATGCTACTCCAGGCTTCCAGCTAATTTAAGTACCATAAGCACCTGATTGCTGCTGATCTTGCTTTAGTTTACAAAAAGAGCCGATCAAAAGCAAGATCGAGCAAGCAGCAACATGGCTCTAATTAAGCATCTGTCCAGGCTGCAAAAACAGGGAGATGAGCAATGGCACTCGGCGGCCTCATCACGTGAGCTGCGGCCGGCGCCGGCATCGGCATCCAGGGGTT | |||||||||
gi|29643835|gb|CB648842.1|CB648842 OSJNEb12H02.r OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb12H02 3', mRNA sequence AGGTGTAAGTGGTTAACCCGT EST sequence (targeted fragment marked with yellow): GAGAAGACCCCCATGGCCTCAGTGGTTGGGGATGGCAGGCCTGCACAGAAATGGTCATGCCGATGACGATATCGAACGAGAGCATGTTCCCTCCATTCACCTTCACTTATGAGGGGAAATCTGATGACTGTTTCCAGAGCTACGGTGTTCGTCCGAGACCACACTGGATCACCACTGAATATGGTGGAAATAGAATTGCCCTGGTGCTCAAGAGGTTTGGGAGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGGGGTGCTCAAGAACATATCATCTAGTATCATTGCCCTTGTCACGGAGAAAGGAGCTCATCATTTGGACTTCAGATCAGCAACTAAAGATGATCCAGATTGGGTTGTAGAACAACGAAGACAAGAAGTTAAGATCATACAGGGATGGATAGATCAGTACAACGAGGACCTTGCACAGATATCAAAATGAGAAGATGCAGTTACTGCGACAGACAATCGAAACATGAGACTGTCTACACAGTAATCAACTGTTTTTGGCTACATGGAAAAAATAAGGAAAAGGAATTTTTCTTTCTTGCAGGCTGTTAGACAGAAAATTAAATTAAGGTAACATACAGTGGAAACTCAATAAGTCACTCAGAAAGGTTGTAAGCGGCTAACCCGCGAAACCCACTTATAGGCCAAAATAAGCCACAAACTCGTTTATTTTGACCTATAAGTGGGTTCGCGGCTTACCCACTTACACCCAGTCAGAATCAGAAATTGTGACACCCAAAAAAGGAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTGTC | |||||||||
gi|116875485|gb|EC365993.1|EC365993 OSI00539 Oryza sativa indica, Clontech PCR select cDNA subtraction Oryza sativa Indica Group AGGTGTAAGTGGTTAACCCGT EST sequence (targeted fragment marked with yellow): TCGAGCGGCCGCCCGGGCAGGTGTTTTTGGCTACATGGAAAAAATAAGGAAAAGGAATTTTTCTTTCTTGCAGGCTGTTAGACAGAAAATTAAATTAAGGTAACATACAGTGGAAACTCAATAAGTCACTCAGAAAGGTTGTAAGCGGCTAACCCGCGAAACCCACTTATAGGCCAAGATAAGCCACAAACTCGTTTATTTTGACCTATAAGTGGGTTCGCGGCTTACCCACTTACACCCAGTCAGAATCAGAAATTGTGACACCCAAATATTCCATGGTTCCATTTATCTCCCAGTAAATAATTGGTTCTATAGAAAAAAAAAAAAAAAAA | |||||||||