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mature miRNA: ATCCTGAACTACAAAACCGGT
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|86531628|gb|CI171834.1|CI171834 CI171834 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo

ATCCTGAACTACAAAACCGGT
|.|||.||||||||||||||
TGGGATTTGATGTTTTGGCCT

EST sequence (targeted fragment marked with yellow):
AGGAGTTTGGGGGTCGAAATATCCGGTTTTGTAGTTTAGGGTCATGGATTAAATTTCGATCACAGTTGAGGGGCATGAAGTGAACTTATTCCAAAAGAGGACGCGCGGGCGTACACGATCACTCGCTCTCGCCGTGCGGCCCGTTGCCCGTTGGTGGTGAGCGGGTGCCTCGGCGGATGACGGAAGCGCGCCCGGAGCGGAGCGGTGCTGCGTTCGGGCGGAGCGCACGGAACGACATAGCATGCCAACGGGTGCGCAAGGGCGCGCTCCTGATCGTCACGACTCACGCGGGTCGCGGCGGGGCAGGCTGCCGTGCCGACCTGCCGGGCCTTCTTCTCCAGCATCTGCCTGGTGGATCGATGCATATTGTCTCTCGACCAGAACTCTTATTGCTAGCTGAGCTGGTAATAACGGTAAGATACCGTGGCAGCCGATCGATCGATCTTCTGTGTGGAGGTACGGGCCGGCGGTGTCTGATTTGGGGCTAGTTTATTTTATTATCGAAATCAATCTGACTAATATTTGATGTTA