| mature miRNA: ATGACTTACGTTGTGAAACGG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88258058|gb|CI360644.1|CI360644 CI360644 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone ATGACTTACGTTGTGAAACGG EST sequence (targeted fragment marked with yellow): GAAACAACAATAGTATATAGTGTACATACTTATAACGATTTAGTGTAAAATAGCAAAGCAAATGCTCACTCTAAAATGATCTACAAATTTGTATAGATTTGTGTATACTATATTTGTTGTTAAACTTGCCTAGGCTCACGATCCGCCACTAGTCAGGACAAAACACTGTGATCCTCATTTAGCAGCATGTCCTACTTACTTCCCCCGTTTCAAAACGTAAGTCATTCTAACATTTCCCACAATATATCTAGATTCATTAACATCAATATAAATATGGGAAATACTAAAATGACTTACATTGTGAAACAGGGAGGATTTGCCAACTACACAGCCAGCGATCATGTACTCGCAGCAATGATCTCCAGTGCCCTGACCTCAACCACTGATTGACCAAGAGAGTTTCACCTGTTTTGCCTGTCACAAATACCTGCT | |||||||||
gi|29634878|gb|CB639887.1|CB639887 OSJNEa12G02.f OSJNEa Oryza sativa Japonica Group cDNA clone OSJNEa12G02 5', mRNA sequence ATGACTTACGTTGTGAAACGG EST sequence (targeted fragment marked with yellow): AAAGCAGAGACATCTTCTCGAAGGCCTGAGCACCAATGGCACGGTATCTTCTCCGTCCTCCCACCGCCGCCGCCGCCGCCGCTGCCGCCGCCTCTTCACACCGCAGGAATGGCACAACCTCGCCGCGGGGACCGGTTCTTGGCCTCCGGGCGCTTGCCTCCAGGGCCGGCAAAGCTCGCCCCGTGATGGCGGTGGCGTCGGAGCAGCCCGCCGCGAGGGGCAAGTGCCCCAAGGTGGCCGCCCCCACCACCGGCCCGATTCCGGCCGCGGAGCTCCTCGGCGTCATCCAGGACGCAGCCAGGGCCGGAGCCGAGGTTATAATGGAAGCTGTTAATAAGCCACGCAATATTCACTACAAGGGAGTTGCAGACCTGGTCACAGAACAAATTGAGTGAGTCGGTCATTCTGGAAGTTGTGAGGAAGACCTTCCCAGACCACCTCATACTTGGGGAGGAAGGTGGACTTATTGGAGATGCCTTGTCGGAGTATCTCTGGTGCATTGATCCTTTAGGTTTGGCCACTTTATTCTCCCTCCGTTTCACAACGTAAGTCATTCT | |||||||||
gi|218480108|gb|FG945855.1|FG945855 MA_93-11_02750 Mature embryo cDNA Library of 93-11 Oryza sativa Indica Group cDNA 5', mRNA s ATGACTTACGTTGTGAAACGG EST sequence (targeted fragment marked with yellow): CCGCGGGGCGGCGCCTAAACTAGTGGATCCCCCGGCTGCAGGATCGAATCCTCTGGTGCATTGATCCTTTAGTTTGGCCACTTTATTCTCCCTCCGTTTCACAACGTAAGTCATTCTACATTGTGAAACGGAGGAAGTACTTTGTAATTCTACTATGATGAAGTCATTAACCAATTGTTCCTGTAGTGGAGTTTGATCATTTAGTAATCATTTAAGAATACTGGGTGATTCCATATGCTCTCTTGATTAAGTATCTGAAATATTTGATTTAGTAGAGGCAACATGCTCGATTGCATGGGCTGGTAACTGAACAGGATGTTATTAGTTCTAGTATATAGTATTATTGGTAGGAGAATGGATGTTGGAAAAAGCCTTTCATATAAATGGATGTTAGAGTATTTGAACTGTTCATAAATTTGAAACAAGATTGGGATCACATTGATTTTAATTTTTAACTGAAGGTTTATCTGAACTTGTATTACTGCAGTGGAAACTTAGACTTTTTCTGTAGTATTCTTCATTGGGGGATCTAATGCAGTGATTTTACCCCTTTTAGATGGAACAACAAACTTTGCGCATGGTTACCCTAGCTTTTCTGTATCCATTGGAGTACTGTTTCGCGGAAAGCCTGCTGCTTCCACTGTGGTCGAATTTTG | |||||||||
gi|29624386|gb|CB629397.1|CB629397 OSIIEb05J12.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb05J12 3', mRNA sequence ATGACTTACGTTGTGAAACGG EST sequence (targeted fragment marked with yellow): AGCTTGAACAGCAGACAATGCATTGTTTGGGAGTGGGACATCAACCAATCTTGGTTGACATGATATGGTCTCGAGCCTGCCTGAACACTAACACCAACATCAAATGCTAACATGAAGGATATAAATGTCAGGCTCCCTATACGTGGAAGGATATAGTTTTGTCCGGTGCAAGATATATTCTTTGAAGATAGTAGGACGAAAGACACTGTCGCGTGTGCCGAGGTTGAGGGTTTTGTTTTCTTGTTGACCGGCAATTTGGATGATGTACCATATGCTGAGTGCCTCTCAATGGGCAACAAAGAAAACATGATGTATAAGTTTATGCAGATTGCCTGTTGTTGAATGCGTTTTTGTTCTTCGCTACACTTGTTCTGGTCAAGGAAAGAAGAACCATGCTGAAGTGTTGGTTTGAACTTTGAAGGGCAATATCCAGCGTGCTTATTGGAACCTTTTCTGTTAGTACTCGATTTTTTTCTAATGTCGGAGTATGACCTTCAGCCTTGACACCCTCCTCCGTACTTGCGGATGGTTTAGGATTCAGCAGGACCTTCCGAATGGCTTGTGTGTATATACTCCCTCCGGTTCACAACGTAAGTCATTCTAGCATTTCTCATATTCATATTGATGTTAATGTATCTATCTAGATTCATTAACATAAATATGAATGTGGGAAATGTTTCTAGCATTTCTCATATTCATATTGATGTTAATGAATCTACTACATAAATATGAATGTGGGAAATGTTAGAATGACTTACATTGTGAAATGGCATTGTGAAATGGAGGAAGTACTTTGTACGAGTTAGGAAAATGGTTGTTCAGAAAAAAAG | |||||||||
gi|88221749|gb|CI221705.1|CI221705 CI221705 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) and mixed s ATGACTTACGTTGTGAAACGG EST sequence (targeted fragment marked with yellow): TAATCATATTTAATCACCGTATGAATTGAAACAACAATAGTATATAGTGTACATACTTATAACGATTTAGTGTAAAATAGCAAAGCAAATGCTCACTCTAAAATGATCTACAAATTTGTATAGATTTGTGTATACTATATTTGTTGTTAAACTTGCCTAGGCTCACGATCCGCCACTAGTCAGGACAAAACACTGTGATCCTCATTTAGCAGCATGTCCTACTTACTTCCCCCGTTTCACAACGTAAGTCATTCTAACATTTCCCACAATATATCTAGATTCATTAACATCAATATAAATATGGGAAATACTAAAATGACTTACATTGTGAAACAGGGAGGATTTGCCAACTACACAGCCACCGATCATGTACTCGCAGCAATGATCTCCAGTGCCCTGACCTCAACCACTGATTGACCAAGAGAGTTTCACCTGTTTTGCCTGTCACAAATACCTGCTCACTAGTAGCCAACACAGACAAGCGTTTCCAGCTATAGTAGCTTCGTCAGGAAGTCAGGAACGAATCCTGTGCTATCTAGTACACTCTACAGGAGC | |||||||||