mature miRNA: ATGTGCTAAAAAGTCAATGGT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|29667061|gb|CB663336.1|CB663336 OSJNEd08C17.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd08C17 3', mRNA sequence ATGTGCTAAAAAGTCAATGGT EST sequence (targeted fragment marked with yellow): TCGGGTAATGATGGAATCTGGCTGTGAGGAGGTGACACTTGAAGCAGAAGTTACGAACAAGGGCGCCCTCGCCTTATATGGTCGTTTGGGTTTCATCCGAGCAAAGAGGCTGTACAGATACTATCTGAATGGCGTCGACGCATTTCGCCTGAAGCTGCTATTTCCTCGCCCTGATCCTGGTATGCATCCAATGATGATGCTAGGCAATGAGAGAGATGACCAGCACATGGATTCTCCTTACTTGTGATACCATTCTGGTCGATTGATAGGATGAGTTAGGATCCAAGGCATTTTGCTCTTTTATGTCAGTTTGATGATGCTTTTGTAGCTTTGCTGTAACTCTTGTAACATTGATGTGTTCAAAGATAGTATCTTATTTGACATGGCATTATGTTTCTTTCAATCCATGTTAGACGGTTGAAAAAGAATGCCTTATTACATACTCCCTCCGTTTCTAAATATTTTACATCATTGACTTTTTAGCATATGTTTGACCATTCGTCTTATTTAAAAACTTTTGTGAAATATGTAAAACTATATGTATACATAAAAGTATATTTAACAATGAATCAAATGATAGGAAAAGAATTAATAATTACTTAAATTTTTTGAATAAGACGAACGGTCAAACATATTTAAAAAAATCAACGGCGTCAAATATTTAGAAACGGAGGGAGTATATTTCATTACTTGGCACTAGGAAGAAGAGTAGTTGGGGTATGAATTTGTATACCGTTTCGAATATTTCGATCCATTTCCTAAATTTATGGATTCATTGAT | |||||||||
gi|88485556|gb|CI422827.1|CI422827 CI422827 Oryza sativa (japonica cultivar-group) 4 days after transferring callus Oryza sativa ATGTGCTAAAAAGTCAATGGT EST sequence (targeted fragment marked with yellow): GGAATACAAATCTTCATCACTAATATGACTTTAGAGACAAATATTAATACACAAAGTAATTATGCAAGAGAGCTATATACTCCCTCTGTTTCTAAATATTTGACACCGTTAACTTTTTAGCACATGTTTGACATTCGCCTTATTCAAAAACTTTTGTGAAATATGTAAAACTATATGTATACATTTAAGTATTTTTTCAATGAATCAAATGATATGAAAAGAATTAATAATTACTTAAATTTTTCTTAATAAGATGAACTGTCACACATATTTAAAAAAAGTTACCAGCGTCAACTATTTAGAAACGGATGGAGTATTCAATCCCCGTATTATGAGATTGCCCTATGGAAAGACTTCGATAATGGATCGAATACCTAACACAGGGCTTATCTTGTAGTCAGTGAATCCTGCCTCCTTGAATACCTTGCACCATTCTTTCTCACCTCTCTGCA | |||||||||
gi|88676347|gb|CI730460.1|CI730460 CI730460 Oryza sativa (japonica cultivar-group) 9 leaf-stage leaf Oryza sativa Japonica Group ATGTGCTAAAAAGTCAATGGT EST sequence (targeted fragment marked with yellow): GATAGGATTAGAGGAGCCAAGATCGAACCGTCTTCAGTAGAGTAGCAGCAGAAGCAGCTCCTTCAGGCCAAATGATGAATTGGTAGAGGGTCATCCATACCATCTCCAAGATGCCATTGTTGATTGGACATTGAGGTCCTGGTTTTGCTTATCCGTTTCGTTCATCATCATCCTGATTCCTTCATGCCCCTCCAAAACCACGGGGTTGCCTCTGCAGATCACGGGTGCCCGGATCTTGAAGCACATGGACAGGCATGGAGCATGGGGTCCCTGTTACAGCTACAGAGAAACCCAGCTACACTGTAGCAACATCAACTGTAATAGTAACTACTCCCTCCGTTTAAAAATATTTGACACCGTTGACTTTTTAGCACATGTT | |||||||||
gi|88904810|gb|CI712109.1|CI712109 CI712109 Oryza sativa (japonica cultivar-group) 9 leaf-stage leaf Oryza sativa Japonica Group ATGTGCTAAAAAGTCAATGGT |