| mature miRNA: ATTTACAGTCATATACAGTTTATA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88840062|gb|CI079516.1|CI079516 CI079516 Oryza sativa (japonica cultivar-group) ABA: Abscic Acid treated callus Oryza sativa ATTTACAGTCATATACAGTTTATA EST sequence (targeted fragment marked with yellow): GCACAAAGATTTCTTTTCAATTAGTACAAACTGTACATGCCTGTAAATTTAACTACATTCCTGGAGATGGCTTCAACGTTACAATTTGTCAATTTATATGTTTCAAAATGGTGTATGCAGCTAACAGTTTGGAAGGGGTAATCTGAACCAGGTTTTCAGCATATACCCAATGAAGTAACCACCGGACCTCTATACCTGTGGCTTTGCGAAACATTCCCATCTTAATTTTGGTTGGGAAATCCCTGTCTCTAAGGAATGCCTCTATATCTTTTATAGATTTCAAACCTTCTTGTTTATCAGCAAGAAACTTTGAGAACTCCAGAACTTTTCCCCCTCTACCATTTTCTGGGGAGGTACTGAAAAAAGGGGATGATGTTGGTGCCAGTGCCCATACGGATGAGAGCACTTCATTGGGTTTGTCCAACTGCTCCAAAATTTTGAAGTCTCCTTTTGCTGAGTACTTGAAGACCATTTCCAAAGATTTACA | |||||||||
gi|88366192|gb|CI551024.1|CI551024 CI551024 Oryza sativa (japonica cultivar-group) 2 weeks seedlings root of seedling UVC irradi ATTTACAGTCATATACAGTTTATA EST sequence (targeted fragment marked with yellow): GCACAAAGATTTCTTTTCAATTAGTACAAACTGTACATGCCTGTAAATTTAACTACATTCCTGGAGATGGCTTCAACGTTACAATTTGTCAATTTATATGTTTCAAAATGGTGTATGCAGCTAACAGTTTGGAAGGGGTAATCTGAACCAGGTTTTCAGCATATACCCAATGAAGTAACCACCGGACCTCTATACCTGTGCTTTGCGAAACATTCCCATCTAAATTTTGCTGGGAATCCTGTCTCTAAGGAATGCCTCTATATCTTTTATAGATTTCAAACCTTCTTGTTTATCAGCAAGAAACTTTGAGAACTCCAGAACTTTTCCCCCTCTACCATTTTCTGGGGAGGTACTGAAAAAAGGGGATGATGTTGGTGCCAGTGCCCATACGGATGAGAGCAC | |||||||||
gi|88365695|gb|CI543176.1|CI543176 CI543176 Oryza sativa (japonica cultivar-group) 2 weeks seedlings root of seedling UVC irradi ATTTACAGTCATATACAGTTTATA EST sequence (targeted fragment marked with yellow): GCACAAAGATTTCTTTTCAATTAGTACAAACTGTACATGCCTGTAAATTTAACTACATTCCTGGAGATGGCTTCAACGTTACAATTTGTCAATTTATATGTTTCAAAATGGTGTATGCAGCTAACAGTTTGGAAGGGGTAATCTGAACCAGGTTTTCAGCATATACCCAATGAAGTAACCACCGGACCTCTATACCTGTGCTTTGCGAAACATTCCCATCTAAATTTTGCTGGGAATCCTGTCTCTAAGGAATGCCTCTATATCTTTTATAGATTTCAAACCTTCTTGTTTATCAGCAAGAAACTTTGAGAACTCCAGAACTTTTCCCCCTCTACCATTTTCTGGGGAGGTACTG | |||||||||
gi|88376613|gb|CI537917.1|CI537917 CI537917 Oryza sativa (japonica cultivar-group) 2 weeks seedlings root of seedling UVC irradi ATTTACAGTCATATACAGTTTATA EST sequence (targeted fragment marked with yellow): GCACAAAGATTTCTTTTCAATTAGTACAAACTGTACATGCCTGTAAATTTAACTACATTCCTGGAGATGGCTTCAACGTTACAATTTGTCAATTTATATGTTTCAAAATGGTGTATGCAGCTAACAGTTTGGAAGGGGTAATCTGAACCAGGTTTTCAGCATATACCCAATGAAGTAACCACCGGACCTCTATACCTGTGCTTTGCGAAACATTCCCATCTAAATTTTGCTGGGAATCCTGTCTCTAAGGAATGCCTCTATATCTTTTATAGATTTCAAACCTTCTTGTTTATCAGCAAGAAACTTTGAGAACTCCAGAACTTTTCCCCCTCTACCATTTTCTGGGGAGGTACTGAAAAAAGGGGATGATGTTGGTGCCAGTGCCCATACGGATGAGAC | |||||||||
gi|88502494|gb|CI430000.1|CI430000 CI430000 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza ATTTACAGTCATATACAGTTTATA EST sequence (targeted fragment marked with yellow): CACAAAGATTTCTTTTCAATTAGTACAAACTGTACATGCCTGTAAATTTAACTACATTCCTGGAGATGGCTTCAACGTTACAATTTGTCAATTTATATGTTTCAAAATGGTGTATGCAGCTAACAGTTTGGAAGGGGTAATCTGAACCAGGTTTTCAGCATATACCCAATGAAGTAACCACCGGACCTCTATACCTGTGCTTTGCGAAACATTCCCATCTAAATTTTGCTGGGAATCCTGTCTCTAAGGAATGCCTCTATATCTTTTATAGATTTCAAACCTTCTTGTTTATCAGCAAGAAACTTTGAGAACTCCAGAACTTTTCCCCCTCTACCATTTTCTGGGGAGGTACTGAAAAAAGGGGATGATGTTGGTGCCAGTGCCCATACGGATGAGAGCACT | |||||||||
gi|86862341|gb|CI330216.1|CI330216 CI330216 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone ATTTACAGTCATATACAGTTTATA EST sequence (targeted fragment marked with yellow): CGCACAAAGATTTCTTTTCAATTAGTACAAACTGTACATGCCTGTAAATTTAACTACATTCCTGGAGATGGCTTCAACGTTACAATTTGTCAATTTATATGTTTCAAAATGGTGTATGCAGCTAACAGTTTGGAAGGGGTAATCTGAACCAGGTTTTCAGCATATACCCAATGAAGTAACCACCGGACCTCTATACCTGTGCTTTGCGAAACATTCCCATCTAAATTTTGCTGGGAATCCTGTCTCTAAGGAATGCCTCTATATCTTTTATAGATTTCAAACCTTCTTGTTTATCAGCAAGAAACTTTGAGAACTCCAGAACTTTTCCCCCTCTACCATTTTCTGGGGAGGTACTGAAAAAAGGGGATGATGTTGGTGCCAGTGCCCATACGGATGAGAGCACTTCATTGGGTTTGTCCAACTGCTCCAAAATTTTGAAGTCTCCTTTTGCTGAGTACTTGAAGA | |||||||||
gi|88477503|gb|CI414774.1|CI414774 CI414774 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza ATTTACAGTCATATACAGTTTATA EST sequence (targeted fragment marked with yellow): CACAAAGATTTCTTTTCAATTAGTACAAACTGTACATGCCTGTAAATTTAACTACATTCCTGGAGATGGCTTCAACGTTACAATTTGTCAATTTATATGTTTCAAAATGGTGTATGCAGCTAACAGTTTGGAAGGGGTAATCTGAACCAGGTTTTCAGCATATACCCAATGAAGTAACCACCGGACCTCTATACCTGTGCTTTGCGAAACATTCCCATCTAAATTTTGGTGGGAATCCTGTCTCTAAGGAATGCCTCTATATCTTTTATAGATTTCAAACCTTCTTGTTTATCAGCAAGAAACTTTGAGAACTCCAGAAATTTTCCCCCTCTACCATTTTCTGGGGAGGTACTGAAAAAAGGGGATGATGTTGGTGCCAGTGCCCATACGGATGAAAGCACC | |||||||||
gi|58608148|gb|CK036181.1|CK036181 34038rsiceg_1005.y1 Oryza sativa cv. 93-11 tillering whole plant cDNA library Oryza sativa cD ATTTACAGTCATATACAGTTTATA EST sequence (targeted fragment marked with yellow): GCACGAGGGGAAAAGGGGCAGCCCTACATATTCCGTGTTGGTTCAGGACAGGTATTTATTTTTTTTGCCCTACATATTCCTGTTGGTACTTGGTAGCCTGTGTTCTGAAATATTACCACTGAAATGTGAGTAATAAAATTACAAACTGATCAAATATATGAACTGTAGATGACTGTAAATATACAATTTACAGTCATATACAGTTTATATATTGAATCGTGTTTGTACAATGAATCAAAATCTCGGCTGGTTACTGGTACTTACCGATCCTAAGCCATCGACTGGCTATCGGTATACCAGCCCAGAACAATTTGAATTAATATTTAAAACTTAAATGTTAAAGAGTACGAACAAAGGTTTTGAATATTAGTTTCAGAACAAAATACCAACTGGTCCCTTTGAGAAAGGGCAACCGACCGCTTACCACTTTTATCTGGAAAAAGATTGAATCCAAAATATTTTATTAAACTAGTAATTGAGGGTAACAAGCTGCTAACAAGTTTTTGGAACATGTCGGTTAACGTCTGGTTTTTGGTTTTCAAATTAAAACTCTTGGTATGTCTAATGTGTAAATTGCACATGAAATACACTAA | |||||||||
gi|89195293|gb|CI051406.1|CI051406 CI051406 Oryza sativa (japonica cultivar-group) cold treated callus Oryza sativa Japonica Gro ATTTACAGTCATATACAGTTTATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTGCACAAAGATTTCTTTTCAATTAGTACAAACTGTACATGCCTGTAAATTTAACTACATTCCTGGAGATGGCTTCAACGTTACAATTGGTCAATTTATATGTTTCAAAATGGTGTATGCAGCTAACAGTTTGGAAGGGGTAATCTGAACCAGGTTTTCAGCATATACCCAATGAAGTAACCACCGGACCTCTATACCTGTGCTTGGCGAAACATTCCCATCTAAATTTTGCTGGGAATCCTGTCTCTAAGGAATGCCTCTATATCTTTTATAGATTTCAAACCTTCTTGTTTATCAGCAAGAAACTTTGAGAACTCCAGAACTTTTCCCCCTCTACCATTTTCTGGGGAGGTACTGAAAAAAGGGGATGATGTTGGTGCCAGTGCCCATACGGATGAGAGCACTTCATTGGGTTGGTCCAACTGCTCCAAAATTTTGAAGTCTCCTTTGGCTGAGTACTTGAAGACCATTTCCAAAGATTT | |||||||||
gi|86839754|gb|CI343677.1|CI343677 CI343677 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone ATTTACAGTCATATACAGTTTATA EST sequence (targeted fragment marked with yellow): GCACAAAGATTTCTTTTCAATTAGTACAAACTGTACATGCCTGTAAATTTAACTACATTCCTGGAGATGGCTTCAACGTTACAATTTGTCAATTTATATGTTTCAAAATGGTGTATGCAGCTAACAGTTTGGAAGGGGTAACCTGAACCAGGTTTTCAGCATATACCCAATGAAGTAACCACCGGACCTCTATACCTGTGCTTTGCGAAACATTCCCATCTAAATTTTGCTGGGAATCCTGTCTCTAAGGAATGCCTCTATATCTTTTATAGATTTCAAACCTTCTTGTTTATCAGCAAGAAACTTTGAGAACTCCAGAAATTTTCCCCCTCTACCATTTTCTGGGGAGGTACTGAAAAAAGGGGATGATGTTGGTGCCAGTGCCCATAGGGATGACAGCACTTCATTGGGTTTGTCCAACTGCTCCAAAATTTTGAAGTCTCCTTTTGCTGAGTACTTGA | |||||||||
gi|86437691|gb|CI119611.1|CI119611 CI119611 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo ATTTACAGTCATATACAGTTTATA EST sequence (targeted fragment marked with yellow): TGCACATAGATTTCTTTTCAATTAGTACAAACTGTACATGCCTGTAAATTTAACTACATTCCTGGAGATGGCTTCGAACGTTACAATTTGTCAATTTATATGTTTCAAAATGGTGTATGCAGCTAACAGTTTGGAAGGGGTAATCTGAACCAGGTTTTCAGCATATACCCAATGAAGTAACCACCGGACCTCTATACCTGTGCTTTGCGAAACATTCCCATCTAAATTTTGCTGGGAATCCTGTCTCTAAGGAATGCCTCTATATCTTTTATAGATTTCAAACCTTCTTGTTTATCAGCAAGAAACTTTGAGAACTCCAGAACTTTTCCCCCTCTACCATTTTCTGGGGAGGTACTGAAAAAAGGGGATGATGTTGGTGCCAGTGCCCATACGGATGAGAGCACTTCATTGGGTTTGTCCAACTGCTCCAAAATTTTGAAGTCTCCTTTTGCTGAGTACTTGAAGACCATTTCCAAAGATTTACAGGGGATGCTGAAATTCAGATGAGGTATTGTGCTCCCACCACCATGCTTAGCATTGCTTGTTATTAGCCCCACCATTCGGCCAAGCGAATCAAGAAGAACACCGCCACTTGCCCCTGGGTGAACTGCTGCTGTTGTCTGCAGCATTACCAGTATGTCCATATTGTTAACCTCCACAACGCTAGGCAGTTGGGAATGTTGAGTTGATGGGATTTTGA | |||||||||
gi|87039366|gb|CI193988.1|CI193988 CI193988 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group ATTTACAGTCATATACAGTTTATA EST sequence (targeted fragment marked with yellow): TTTGCACAAAGATTTCTTTTCAATTAGTACAAACTGTACATGCCTGTAAATTTAACTACATTCCTGGAGATGGCTTCAACGTTACAATTTGTCAATTTATATGTTTCAAAATGGTGTATGCAGCTAACAGTTTGGAAGGGGTAATCTGAACCAGGTTTTCAGCATATACCCAATGAAGTAACCACCGGACCTCTATACCTGTGCTTTGCGAAACATTCCCATCTAAATTTTGCTGGGAATCCTGTCTCTAAGGAATGCCTCTATATCTTTTATAGATTTCAAACCTTCTTGTTTATCAGCAAGAAACTTTGAGAACTCCAGAACTTTTCCCCCTCTACCATTTTCTGGGGAGGTACTGAAAAAAGGGGATGATGTTGGTGCCAGTGCCCATACGGATGAGAGCACTTCATCGGGTTTGTCCAACTGCTCCAAAATTTTGAAGTCTCCTTTTGCTGAGTACTTGAAGACCATTTCCAAAGATTTACAGGGGATGCTGAAATTCAGATGAGGTATTGTGCTCCCACCACCATGCTTAGCATTGCTTGTTATTAGCCCCACCATTCGGCCAAGCGAATCAAGAAGAACACCGCCACTTGCCCCTGGGTGAACTGCTGCTGTTGTCTGCAGCATTACCGGTATGTCCATATTGTTAACCTCCACAACGCTAGACAGTTGGGAATGTTGAGTTGATGGGATTTTGACAATCTTTGATACCACTCCAGAGGAAAGGGAGGAGGATAGTCCTGATCG | |||||||||
gi|89197085|gb|CI021925.1|CI021925 CI021925 Oryza sativa (japonica cultivar-group) green shoot Oryza sativa Japonica Group cDNA ATTTACAGTCATATACAGTTTATA EST sequence (targeted fragment marked with yellow): AGTACAAACTGTACATGCCTGTAAATTTAACTACATTCCTGGAGATGGCTTCAACGTTACAATTTGTCAATTTATATGTTTCAAAATGGTGTATGCAGCTAACAGTTTGGAAGGGGTAATCTGAACCAGGTTTTCAGCATATACCCAATGAAGTAACCACCGGACCTCTATACCTGTGCTTTGCGAAACATTCCCATCTAAATTTTGCTGGGAATCCTGTCTCTAAGGAATGCCTCTATATCTTTTATAGATTTCAAACCTTCTTGTTTATCAGCAAGAAACTTTGAGAACTCCAGAACTTTTCCCCCTCTACCATTTTCTGGGGAGGTACTGAAAAAAGGGGATGATGTTGGTGCCAGTGCCCATACGGATGAGAGCACTTCATTGGGTTTGTCCAACTGCTCCAAAATTTTGAAGTCTCCTTTTGCTGAGTACTTGAAGACCATTTCCAAAGATTTACAGGGGATGCTGAAATTCAGATGAGGTATTGTGCTCCCACCACCATGCTTAGCATTGCTTGTTATTAGCCCCACCATTCGGCCAAGCGAATC | |||||||||
gi|87041310|gb|CI195932.1|CI195932 CI195932 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group ATTTACAGTCATATACAGTTTATA EST sequence (targeted fragment marked with yellow): GCACAAAGATTTCTTTTCAATTAGTACAAACTGTACATGCCTGTAAATTTAACTACATTCCTGGAGATGGCTTCAACGTTACAATTGTCAATTTATATGTTTCAAAATGGTGTATGCAGCTAACAGTTTGGAAGGGGTAATCTGAACCAGGTTTTCAGCATATACCCAATGAAGTAACCACCGGACCTCTATACCTGTGCTTTGCGAAACATTCCCATCTAAATTTTGCTGGGAATCCTGTCTCTAAGGAATGCCTCTATATCTTTTATAGATTTCAAACCTTCTTGTTTATCAGCAAGAAACTTTGAGAACTCCAGAACTTTTCCTCCTCTACCATTTTCTGGGGAGGTACTGAAAAAAGGGGATGATGTTGGTGCCAGTGCCCATACGGATGAGAGCACTTCATTGGGTTTGTCCAACTGCTCCAAAATTTTGAAGTCTCCTTTTGCTGAGTACTTGGAGACCATTTCCAAAGATTTACAGGGGATGCTGTAATTCAGATGAGGTATTGTGCTCCCACCACCATGCTTAGCATTGCTTGTTATTAGCCCCACCATTCGGCCAAGCGAATCAAGAAGAACACCGCCACTTGCCCCTGGGTGAACTGCTGCTGTTGTCTGCAGCATTGCCGGTATGTCCATATTGTTAAC | |||||||||
gi|29625263|gb|CB630274.1|CB630274 OSIIEb07C05.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb07C05 5', mRNA sequence ATTTACAGTCATATACAGTTTATA EST sequence (targeted fragment marked with yellow): TTTTTGCACAAAGATTTCTTTTCAATTAGTACAAACTGTACATGCCTGTAAATTTAACTACATTCCTGGAGATGGCTTCAACGTTACAATTTGTCAATTTACATGTTTCAAAATGGTGTATGCAGCTAACAGTTTGGAAGGGGTAATCTGAACCAGGTTTTCAGCATATACCCAATGAAGTAACCACCGGACCTCTATACCTGTGCTTTGCGAAACATTCCCATCTAAATTTTGCTGGGAATCCTGTCTCTAAGGAATGCCTCTATATCTTTTATAGATTTCAAACCTTCTTGTTTATCAGCAAGAAACTTTGAGAACTCCAGAACTTTTTCCCCTCTACCATTTTCTGGGGAGGTACTGAAAAAAGGGGATGATGTTGGTGCCAGTGCCCATACGGATGAGAGCACTTCATTGGGTTTGTCCAACTGCTCCAAAATTTTGAAATTTCCTTTTGCTGAGTACTTGAAGACCATTTCCAAAGATTTACAGGGGATGCTGAAATTCAGATGAGGTATTGTGCTCCCACCACCATGCTTAGCATTGCTTGTTATTAGCCCCACCATTCGGCCAAGTGAATCAAGAAGAATACCGCCACTTGCCCCTGGGTGAACTGCTGCTGTTGTCTGCAGCATTACCGGTATGTCCATATTGTTAACCTCCACAACGCTAGACAGTTGGGAATGTTGAGTTGATGGGATTTTGACAATCTTTGATACCACTCCAGAGGAAAGGGAGGAGGATAGTCCTGATCGAGGTCCAAGAAGGCCATGTCCAACCACATATACAGATGAGCCTGCTGTTGGACAAACGAATTCTGGTCTAATGGCACATAATTCAATTGGA | |||||||||
gi|88431864|gb|CI560109.1|CI560109 CI560109 Oryza sativa (japonica cultivar-group) 2 weeks seedlings root of seedling UVC irradi ATTTACAGTCATATACAGTTTATA EST sequence (targeted fragment marked with yellow): GCACAAAGATTTCTTTTCAATTAGTACAAACTGTACATGCCTGTAAATTTAACTACATTCCTGGAGATGGCTTCAACGTTACAATTTGTCAATTTATATGTTTCAAAATGGTGTATGCAGCTAACAGTTTGGAAGGGGTAATCTGAACCAGGTTTTCAGCATATACCCAATGAAGTAACCACCGGACCTCTATACCTGTGCTTTGCGAAACATTCCCATCTAAATTTTGCTGGGAATCCTGTCTCTAAGGAATGCCTCTATATCTTTTATAGATTTCAAACCTTCTTGTTTATCAGCAAGAAACTTTGAGAACTCCAGAACTTTTCCCCCTCTACCATTTTCTGGGGAGGTACTGAAAAAAGGGGATGATGTTGGTGCCAGTGCCCATACG | |||||||||