| mature miRNA: CAAGATATTGGGTATTTCTAA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|218494297|gb|FG969478.1|FG969478 MA_LYP9_08262 Mature embryo cDNA Library of LYP9 Oryza sativa Indica Group cDNA 5', mRNA seq CAAGATATTGGGTATTTCTAA EST sequence (targeted fragment marked with yellow): CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTACAAGAACACAAAGGTTGGCGATATCTCATGAAGCTTCCGATGGGCGCCATTCCTGGCACTGCAGACATCTGACACATTCCTCACCATGATTGCTGCTGCTGTCCAGTACAGGATGAAGAGCCTCCCAGAGAGTAGACATTGGGGGAGATAAGATTGAGAACATCATTACGCAATCTTCCGTTGTGCACATGCTTGCAGAGTGTGTTGGACTTCCTTGGTTTGAGAGCTGGGGAACTAAGAAACTCTCCGAGCTGGGGCTTCCTCTCATGAAGCCATGCAAACTCGTTAAGGTAAATGAAGACCAACCTGTGTTAAAAGCCTTCCAACTGATGAGGGAAAAAGGCGTTGGTGGCCTCCCGGTTATGGACACAAGTGGCACAAAAGCAATTGGCAATATCAGCATCAGAGATGTCCAATATCTTCTAACTGCCCCCAACATATACAAAGATTACAGGACAATCACGGCCAATGATTTCCTTACCGCGGTCCGGCAACACCTTCAGGAGCAACACAATGCCTCGCCGTTGCTCGGCTCCGTCATCACA | |||||||||
gi|66915678|gb|CX102526.1|CX102526 RECm3525 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl CAAGATATTGGGTATTTCTAA EST sequence (targeted fragment marked with yellow): TAAGATGGCACATGAAGAGAAGGATGCCACACTAACACAACTAGAGAAGTCAGAGGATTCTATCAAGAATCTTGAAAGTGAGTTGGCACAGCTGAAGGAGGAACTATCAGTTCAGATGGAAAGCAATTCCAGCTTGAACAAGCAATTGGAGGAGGCAATATTGAAAGTGTCAAACTTAACTGAGGAGCTCGAGACAGTTCAAGCTGAGACTGCCAGTAAAATTAATGACATGGAAACTAACACAAAAGATTTGGTAAATACAATTGTTCTATTATCTTCTCAGAAGAACAAAGTGGAGGAGCATATGAAAATTATTACCGAAGCATGCATGGAGAAAATGTCATTTATGAAAGATTTCGAAGATCAAGTAAAGCAAAAAATTACAGATCGTGAGATAGCAATTGCTTGCCTCCAGCAGAGCCTCAGAGGAATTATTGGCAGCTGCCAGAGACTCCAGTATGCATATGGAGAGGTATCCACAAAGGCATCACACCTTGAGGTACTTCGGAGGAATCACCTCGTGCAGATAGATACATTGGAGAACAAACACACAGAAATTATGGAGAAACATCGTCATTTAGGGGAGGAAAATACATCTGCAAACAAAGAGAACAGAAAGCTACAAAATCATGTCCAAGAACTTGAAGCTCAGCTCCAGCTAGCCAGGCAGAAGCTTAGAGTTACTGAGGCAGAAAGCAAAAGCAAAGAAGACAGCTATGTGATGGCAGTGGAAAAATCACATAGAGAGATCCAGTATCTTGAACAGAAAATACAGAAATATTCTGGACAGATCAACTCACTGGAAGAAACTCTCGTACAAATTAAAGGAAATGCTGAGTCCGNGAACTCCACACTGGTTGAGTCATTGGATCAGGTAGAATCACATTTCACTAAGAGTTTTTCCCCTTCTCTGGCCGGTCATTTGCATGCAGGGAAAAGCCCAGTCCTAGGAACCGTTCCGGCCTCTGCTCGACGAGAATGCTCCACATATTGCTGTTAATTCAACANCCCAGTTTAGGGCCCGTCAGAAAGCCGACCAGTCTCGGTAGAACAGCCCCGGGATAAACGAACGGCACACTTCCCCCCTCCGCCCCTACTACAGTTCTCAGGAAAACTATATACACTNNNGGCACCACGAGACCACGAGAACACAAGAGAGTCAGCACGGAGCAACACAGAAACGATGACGAGGCACGACGTAACACGACGCAAGCATGCACCAACCCAGCGACGCAACGAGCGAGCAGAGCAGCACACACGAGAACGTAAGCAGACCCAACCGACAGCAAAACGAACAAGCAGACGCAGCAACACACACGCGACGAGCGACACAGCAGAAGCGCTAGCAACTAA | |||||||||
gi|29617576|gb|CB622588.1|CB622588 OSIIEa09H19.f OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa09H19 5', mRNA sequence CAAGATATTGGGTATTTCTAA EST sequence (targeted fragment marked with yellow): GCCGCCGCCGCCGCGTTTCCCACCATGCGCCGCTTCGTCGCCGACCGGGCGCGGCGCGCGGTGACCTCCTCCGCCGCTTCGATGCGCGCGGCCGCCACCAGATCAGCCGCGCCGTCTGCCGGGGCTGCCCCCTCGGCGCCATCCCCGCCGCCGCCGGCGGCGGCGGCGCTGGCCATGGCTTCCGCCATGGTGAGGGCCATGTCGACCGCGGCTGCCGGCGCGGCGCCGGTGTCACTCCACACCATCAACCCCAAGGTGTTGAAGTGTGAATATGCTGTCCGTGGAGAGATTGTTACACATGCTCAGAATTTACAACCAGAATTACAGAAAAACCCAGACTCACTTCCTTTTGACGAGATACTTTATTGCGACATTGGAAATCCCCAATCTCTTGGCCAGCAGCCAGTTACATTTTTCACAGAGGTCTTGTCGGTATGTGATCATCCAGCTCTGCTGGATAAAAGTGACACTCATGCTCTGTACGGTTCACATGCTATAGAAAGAGCGTGGCAAATTCTAGACAAGATCCCAGGAAGAGCAACAGGAGCCTATAGCCATACTCAGGGTATAAAGGGTTTGCGTGATGATATTGCTGCTGGAATTGCTGCCCGTGATGGTTTTCATGCTAGTGGAGATAACATATTCCTAACA | |||||||||
gi|89162956|gb|CI099846.1|CI099846 CI099846 Oryza sativa (japonica cultivar-group) Panicles one day after flowering Oryza sativa CAAGATATTGGGTATTTCTAA EST sequence (targeted fragment marked with yellow): TCATTTTTTTTTGACCTGATAGCTTGATAAAACAATCTCTGTTGCTTCAATATCACACTGAGGTGAAACCAATATCATAGTGTATTAATATATCATACAGTATGATATAGTGCTTCCCGATTAGATTTTGCTCACATCACCCTGGTGTTTTCCCTCGCTCTTCTCCTTCTCCTTGGGAGTGTTTCTCCTTTCAATCCCTCTCCCATTGTCATTGCCCATGTAGTGTGCTTTTTCCTCCAGAAGCAGCCCTCTCAATCTTACAGGCAGCAGCCTTTTCAATCTTCCCGTTGTTGCATCTTGATAAAACCCCACAATACTTTCATTGTACAAACATGCAGTCCTCATGTGCAGGAGAGGAACTGAAGTGATTTCTGGGTGCCAAAAAAGTGTGGAGTCGGCAAACTGATAAAAGTCCCCAATATCTTGAAAACTTCCTTGCAACTTTGTTAAACTTAAAACTGAGTGGCGATGGATTCATGTCGGTCAGC | |||||||||
gi|44672905|gb|CR286339.1|CR286339 CR286339 Oryza sativa library (Han B) Oryza sativa cDNA clone y781c06p5, mRNA sequence CAAGATATTGGGTATTTCTAA EST sequence (targeted fragment marked with yellow): NGCCACTGTGGTACCGGGAATCGGGCATATTGCGGGGGCGGCGGCGGCGCTGGCCATAGGCTTCCGCGCAAATGTGTGAGGGCCATGTCGACCGCGGCTGCCGGCGCGGCGCCGGTGTCACTCGACACCATCAANCCCAAGGTGTTGAAGTGTGAATATGCTGTCCGTGGAGAGATTGTTACACATGCTCAAATTACACAGAATTAAGAAAACCAATCATTCTTTGACGAGATACTTTATTGAACATTGGAAATCCCCAATCTCTTGGCCAGCAGCCAGTTACTTTTTCAGAGAGGTCTTGTCGTTATGTGATCATCCAGCTCTGCTGGATAAAAGTGAAACTCATGCTCTGTACAGTTCAGATGCTATAGAAAGAGCATGGCA | |||||||||
gi|88491630|gb|CI428902.1|CI428902 CI428902 Oryza sativa (japonica cultivar-group) leaf of seedling 10mM H2O2 (10min), 24hr afte CAAGATATTGGGTATTTCTAA EST sequence (targeted fragment marked with yellow): GGTGACAATAGGATTTCATTTTTTTTTTGACCTGATAGCTTGATAAAACAATCTCTGTTGCTTCAATATCACACTGAGGTGAAACCAATATCATAGTGTATTAATATATCATACAGTATGATATAGTGCTTCCCGATTAGATTTTGCTCACATCACCCTGGTGTTTTCCCTCGCTCTTCTCCTTCTCCTTGGGAGTGTTTCTCCTTTCAATCCCTCTCCCATTGTCATTGCCCATGTAGTGTGCTTTTTCCTCCAGAAGCAGCCCTCTCAATAGGCAGCAGCCTTTTCAATCTTCCCGTTGTTGCATCTTGATAAAACCCCACAATACTTTCATTGTACAAACATGCAGTCCTCATGTGCAGGAGAGGAACTGAAGTGATTTGGTGCCAAAAAAGTGTGGAGTCGGCAAACTGATAAAAGTCCCCAATATCTTGAAAACTTC | |||||||||
gi|86252495|gb|CI003831.1|CI003831 CI003831 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c CAAGATATTGGGTATTTCTAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTATTTTTTTTATTCATGAAAAGAGCTTGCCATCCCTCCAGGTAGATATTAACTTCTCGCAATCAGTGGTTGTAGTTCAGCAAAATTCAGTTTGGAGCTGGACAACGGAAGCCCGAGACTAGAGTACACCTGGGGTGAAATTTTTCTACTTTCGCAGTGGATGGATTGCTGCTACTGCTAGAGCTTGAGTTTCAGCACTATCTTGTGGAAGCCTGGAGTTCCTGCTGTATCCTGTTAGCCATTGCTTTGGCTGTGATCTTGATGGAGCAAATCTGTAGCCGGAGGGACTAGCATAATATGATGAGGATCAGGTATTGTGGAAGGGACTGATGCCGTGTTTTAGAAATACCCAATATCTTGCTTCAGCAAGATATTGGGTATTTCTAGCTTTCCTTTCTTCAAAAATTGCTATATGTTAGCA | |||||||||
gi|29658346|gb|CB654621.1|CB654621 OSJNEc07E17.r OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc07E17 3', mRNA sequence CAAGATATTGGGTATTTCTAA EST sequence (targeted fragment marked with yellow): TGAAGCCATGCAAACTCGTTAAGGTAAATGAAGACCAACCTGTGTTAAAAGCCTTCCAACTGATGAGGGAAAAAGGCGTTGGTGGCCTCCCGGTTATGGACACAAGTGGCACAAAAGCAATTGGCAATATCAGCATCAGAGATGTCCAATATCTTTTAACTGCCCCCAACATATACAAAGATTACAGGACAATCACGGCCAAGGATTTCCTTACCGCGGTCCGGCAACACCTTCAGGAGCAACACGAGGCCTCGCCGTTGCTTGGCTCCGTCATCACATGCAGAAGGGATGATGAAGTCAAGGACATCATACTGAAGCTGGACTCGGAGAAGATCCACAGGATTTACGTGATCGATGACAAGGGGAACACCGAGGGGGTCATCACGCTGAGGGACATAATTTCCAAGCTGGTGCACGAGCCACGCCATTACTTTGGGGATTTTTTCGATGGTGTTGTTCCCCTGCCTCCAAACAGCACTGTATGACACGGCCCTTGAGATTTCATCACGCTGGTGTGCTTTTGTAAATTGTACATTATGTCCCTTTACGACAATGGTTCCAAATGGATGGGAATAGTGTACAGTTTGCCTTGTGTAGTTCTTTGGCAGTGGAACAACTAATGGACTAATGGATAGCACGGGTGTACATTCAATAACTTGAAATAAAGTTTGAGCTCCCTTCTGTATGTTTT | |||||||||
gi|117216715|gb|CT845450.1|CT845450 CT845450 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD CAAGATATTGGGTATTTCTAA EST sequence (targeted fragment marked with yellow): AAATCACGCCTCCGCCTCGTGCTCCCCCCGGTCGCGATCTCTCCCCCTCGCCGCCGCCGCCGCGTTTCCCACCATGCGCCGCTTCGTCGCCGACCGGGCGCGGCGCGCGGTGACCTCCTCCGCCGCTTCGATGCGCGCGGCCGCCACCAGATCAGCCGCGCCGTCTGCCGGGGCTGCCCCCTCGGCGCCATCCCCGCCGCCGCCGGCGGCGGCGGCGCTGGCCATGGCTTCCGCCATGGTGAGGGCCATGTCGACCGCGGCTGCCGGCGCGGCGCCGGTGTCACTCGACACCATCAACCCCAAGGTGTTGAAGTGTGAATATGCTGTCCGTGGAGAGATTGTTACACATGCTCAGAATTTACAACAAGAATTACAGAAAAACCCAGACTCACTTCCTTTTGACGAGATACTTTATTGCAACATTGGAAATCCCCAATCTCTTGGCCAGCAGCCAGTTACATTTTTCAGAGAGGTCTTGTCGTTATGTGATCATCCAGCTCTGCTGGATAAAAGTGAAACTCATGCTCTGTACAGTTCAGATGCTATAGAAAGAGCATGGCAAATTCTAGACAAGATCCCAGGAAGAGCAACAGGAGCCTATAGCCATAGTCAGGGTATAAAGGGTTTGCGTGATGAAATTGCTGCTGGAATTGCTGCCCGTGATGGTTTTCATGCTAGTGGAGATAACATATTCCTAACAGATGGAGCAAGCCCAGCAGTGCACATGATGATGCAATTATTGATAAGATCTGAGAATGATGGCATTCTCTGCCCTATTCCGCATACCCGCTCTACTCCGCGTCAATTGCTCTCCATGGTGGTTCTCTTGTATGTACTATGACAATGCTTATAACGC | |||||||||
gi|38473208|gb|CF957340.1|CF957340 6547rsiceb_12989.y1 Oryza sativa cv. PA64s leaf cDNA library Oryza sativa Indica Group cDNA 5 CAAGATATTGGGTATTTCTAA EST sequence (targeted fragment marked with yellow): CGGCACGAGGGCACAAAAGCAATTGGCAATATCAGCATCAGAGATGTCCAATATCTTCTAACTGCCCCCAACATATACAAAGATTACAGGACAATCACGGCCAAGGATTTCCTTACCGCGGTCCGGCAACACCTTCAGGAGCAACACGAGGCCTCGCCGTTGCTCGGCTCCGTCATCACATGCAGAAGGGATGATGAAGTCAAGGACATCATACTGAAGCTGGACTCGGAGAAGATCCACAGGATCTACGTGATCGATGACAAGGGGAACACCGAGGGGGTCATCACGCTGAGGGACATAATCTCCAAGCTGGTGCACGAGCCACGCCATTACTTTGGGGATTTCTTCGATGGTGTTGTTCCCCTGCCTCCAAACAGCACTGTATGACACGGCCCTTGAGATTTCATCACGCTGGTGTGCTCTTGTAAATTGTACATTATGTCCCTTTACGACAATGGTTC | |||||||||
gi|44677249|gb|CR290683.1|CR290683 CR290683 Oryza sativa library (Han B) Oryza sativa cDNA clone p516b02p5, mRNA sequence CAAGATATTGGGTATTTCTAA EST sequence (targeted fragment marked with yellow): TCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGAGCAGAGCCTCAGAGGAATTATTGGCAGCTGCCAGAGACTCCAGTATGCATATGGAGAGGTATCCACAAAGGCATCACACCTTGAGGTACTTCGGAGGAATCACCTCGTGCAGATAGATACATTGGAGAACAAACACACAGAAATTATGGAGAAACATCGTCATTTAGGGGAGGAAAATACATCTGCAAACAAAGAGAACAGAAAGCTACAAAATCATGTCCAAGAACTTGAAGCTCAGCTCCAGCTAGCCAGGCAGAAGCTTAGAGTTACTGAGGCAGCAAAGCAAAAGCAAAGAAGACAGCTATGTGATGGCAGTGGCAAAAATCACATAGAGAGATCCAGTATCTTGAACAGAAAATACAGAAATATTCTGGACAGATCAACTCACTGGAAGAAACTCTCGTACAAATAAAAGGAAATGCTGAGTCCGGAACCTCCACACTGGTTGATCAATTGGATCAGATAGAATCACATTTCAATAAGAGTTTTTCCCACTTCTCTGGCCGTTCATTTGCATGCCGTGAAGAGCTCAAGCTCTTAAGGAACCGGTGTCCAGGACATCTTGCTGAACCGCACGGTTTGGGCCCACACATGTGGGCCAGGATCCCGGGGCCAAACCCAACCGTTCGGCCACAAGGGGAAAGGTCCCGGGACCAAAAAGGGTCCCCTAAAAACTGGGGGAGAGAAAAACCACGGC | |||||||||
gi|117216454|gb|CT857920.1|CT857920 CT857920 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD CAAGATATTGGGTATTTCTAA EST sequence (targeted fragment marked with yellow): AGCAAATCACGCCTCCGCCTCGTGCTCCCCCCGGTCGCGATCTCTCCCCCTCGCCGCCGCCGCCGCGTTTCCCACCATGCGCCGCTTCGTCGCCGACCGGGCGCGGCGCGCGGTGACCTCCTCCGCCGCTTCGATGCGCGCGGCCGCCACCAGATCAGCCGCGCCGTCTGCCGGGGCTGCCCCCTCGGCGCCATCCCCGCCGCCGCCGGCGGCGGCGGCGCTGGCCATGGCTTCCGCCATGGTGAGGGCCATGTCGACCGCGGCTGCCGGCGCGGCGCCGGTGTCACTCGACACCATCAACCCCAAGGTGTTGAAGTGTGAATATGCTGTCCGTGGAGAGATTGTTACACATGCTCAGAATTTACAACAAGAATTACAGAAAAACCCAGACTCACTTCCTTTTGACGAGGTTTGTATTTTGATCACATGAAGTATTCTCTATGGTAAAATAAATAAATAAAATCTAATAATCAATTATCAAATATCAATATATTTACCTGCACCCATATATTTAATGTCAGATACTTTATTGCAACATTGGAAATCCCCAATCTCTTGGCCAGCAGCCAGTTACATTTTTCAGAGAGGTCTTGTCGTTATGTGATCATCCAGCTCTGCTGGATAAAAGTGAAAACTCATGCTCTGTACAGTTCAGATGCTATAGAAAGAGCATGGCAAATTCTAGACCAAGATCCCAGGAAAAGCAACAGGAGCCTATAGCCTTAGTTCAGGGTATTAAGGGTTTGGCGTGATGAAATTTGCTGCTGGGAATTGCTGCCCCGTGATGGTTTTCCTGCCAATGGAAAATAAACTATTTCCTAAACAGAAGGGACCAAGGCCAGGCAAGTGCCACTTGGATGAATGCCATTTTATTGGATAAGATTCTGGAAAATGGATGGGGATTTCCCCTGGCCCTATTTCCGAAAAAACCCCCCCCCCAACCTCCCGGGGGCAAATTGGGCTCTCCCCGGGGGGGGGTTCCTCTTGGGTACCCTATATTTTCCCTTGTAAGTAAAGGAAAAAAGGGGGTGGGGGGACGCGCGGGGGGGGTTGTGGAAGAAACTTTTTATAAAAAAAAAAATGTTGGGGGGGGGGAGGGGCCCCAAGACCCCCTTAGGGGGGGGTATGCCACAGTGGGTTTGAAGAACGCCCTCTATTGTTTGTGTCGATGTTTTTTAAAAATTCCCGCCCAGGGGGTGGGAACCAACCCCCCACACACCGTGCGGGGGGAGGCCGCACGGGAGGGGTGTGTTGTCTTT | |||||||||
gi|88268953|gb|CI380251.1|CI380251 CI380251 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone CAAGATATTGGGTATTTCTAA EST sequence (targeted fragment marked with yellow): GTAATCAACTATAGCCACCCTTAGATGCCGCAATTTGGTTCCAAACAAATAGAATTACATATAAGAGACCAAAAGGTTTTGATCCAGAGGCAGGGGAACAACAACTTGATACTGGACAACCCCAAGGCTATGAGATCACGATACAGAACAAAATTCACAGCAACTTGTAAGTGATGAACAAAGAATAACTCAGTAAGTGGGGTAGTAGTACCCAGTATTTTGCAGTGTAAGCCATTGGCATGGGGTTCGTGTTATATGCTTGCAGGCATCCCATAAGGCATGGCTGGGTTGGGGGCGAAGCCATTGTTGTAAGCCCGATCGAGCTTGGCCAAGCTTGACTTGGCCCTGCATGCCATCCCTCTGTACTTGCTGCCACATCATCTGTTCCTGAGTCAAGAACTTGCTGCTTCTTCTCCAT | |||||||||