| mature miRNA: CATGCGGTTGCCCCAACCGCA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|218501864|gb|FG958633.1|FG958633 MA_PA64s_06444 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s CATGCGGTTGCCCCAACCGCA EST sequence (targeted fragment marked with yellow): ATTCACATTCTCATGGGTGCACAATGCACATCTCAAGCGCATGCTTGAGAAGCTCCGGCCCAAGCACCCCAATGTGAGGATCATATATGGCGATTACTACACGCCTGTTATCCAGTTCATGCTTCAGCCCGAGAAGTTTGGATTTACAAGCAGCTACCTAGGGCATGCTGCGGGGCTCCTGGGTCCGTTGCGAAGGCCGCTTACAACTTCAATGTCACAGCCAAATGTGGTGAGGCTGGTGCAACCGCGTGTGATGATCCATCAACCCATTGGAGCTGGGATGGCATTCACCTGACAGAGGCGGCTTACGGTCACATTGCCAGAGGTTGGGTATATGGTCCTTTCGCTGACCAACCGATCTTCCAATCTTCATGAGAAAGTCACTTCTTCCGTTGTAATTGTAGAGGTGTATCACGATAGTGCACTGACATGGAGCAGGGAAAGTAGTTCTTCCATATG | |||||||||
gi|86523026|gb|CI163232.1|CI163232 CI163232 Oryza sativa (japonica cultivar-group) shoot and callus Oryza sativa Japonica Group CATGCGGTTGCCCCAACCGCA EST sequence (targeted fragment marked with yellow): TAGGGATAATTTTAACATTTATCTTCTTGTTAATAATCGTACAATCACTACTAAAAAAGTGTTTTTGCATGCGAGCTAGAAGGATCTTTTCATGCGGTTGGTTGGTGCAACCGCATGGGCGAGCTCTTCTGCAAAAATCGCTCTTTGGCGTAACCGCATGCGAAAATCCATGCAATCGCATATACCGGCCGCATGCAAAAATAAATTCGGCAACAAAAAAATAAAATCCAAAAAACCCCCAAACCCTAGCCCGTCGCCGGACCCGTCGCCCCCGCCGCCCGCTGTCGTCGGCAGCACCAAATCGGCGCGGGGCAGCGCCGCCCGAGGAGGCCGCCACGGCGGCGTTGAGGGGGGGGGGGGAGGCGCCACTGCCGTCCAGATCCGCCGCCGCGCCGCCGTCGCGCATGGGAGGTCGGTGAAGGGAGGTCGCCGCCGTTGCTGAGCCCGCCGCTGCCGCGCCGGATGGGAGGTCGGGGAAGAGAG | |||||||||
gi|88662484|gb|CI469985.1|CI469985 CI469985 Oryza sativa (japonica cultivar-group) 4.5 leaf-stage leaf Oryza sativa Japonica Gro CATGCGGTTGCCCCAACCGCA EST sequence (targeted fragment marked with yellow): CGTTCCAATTTCAACCAAACTTTCAATTTTAGCGTGAACTAACACTAGTACGGAAAGGCTTTTGGCATACGGGCAAAAAGCATCTTTGCATGCGGTTGGGGCAACCGCATGTGGGAGAAGGTCTGTAAAAATCACCCTTTTCGCATGCGGCCGGCCCATNCGCATGCAAAAATCCCATTTTCGCATGCGGTTGCTTATACGGGCCGCATGCGAAAATAAATTCAGCAAAAAAAAAAAAATAAAAATTCAAAAAATCCTGAACCCTANAACGCCGCCGTAGGGTGCCGGATTCGTCGCCCCCGCGCCCGCNGGCGTATTGGTACCGGATCCGTCGCCCAC | |||||||||
gi|29687224|gb|CB683499.1|CB683499 OSJNEf11P09.r OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf11P09 3', mRNA sequence CATGCGGTTGCCCCAACCGCA EST sequence (targeted fragment marked with yellow): GCTTGCGGTGGAACGTGCAGGCGGAGCTGGTGCACTGCCGGTGGGCGATGCTGAGCGCGGCGGGCATCTTCATCCCGGAGTTCCTGACCAAGATCGGCATCCTCAACACGCTGTCGTGGTACACCGCCGGCGAGCAGCAATACTTCTCCGACACCACCACCCTCTTCATCATCGAGCTCATCCTCATCGGCTGGGCCGAGGGCCGCCGGTGGGCTGACATCATCAAGCCCGGCTGCGTCAACACCGACCCCATCTTCCCCAACAACAAGCTCACCGGCACAGACGTCGGGTACCCTGGTGGTCTGTGGTTTGACCCGCTCGGTTGGGGCACCGGCTCGCCGGAGAAGATCAAGGAGCTGCGCACCAAGGAGATCAAGAACGGGCGGCTCGCCATGCTCGCCGTCATGGGAGCTTGGTTCCAGGCAGAGTACACTGGCACCGGCCCCATCGACAACCTCTTTGCCCATCTCGCCGACCCCGGCCACGCCACCATCTTCCAGGCCTTCACCCCCAAATGAGGAGTTCTTCAGGTGTTGGAGTGTTAGCAATGGCTGCCAATGGAGGAAGATGAAAAGACTGTTCGTCGACGCGACTTCCCTCTCTTTTTTGGGATCGGAGTAGGCTGTGAATGGTGGTGGTCTATTGGGATGTAATTGTGGATGGAGCAGCTGCATGCCTTGTTGATTGTGTCCCTGTAGTATGATGTAGCCGAGGTAAAAAACAAGTTGATCCTCTTTTAGAAGTCAAGTTCTCTTCTTCAAACAAAAAAGGGGATACAATCTCGAGGGGGGGCCCGGTACCCAGCTTTGTC | |||||||||
gi|88462392|gb|CI514524.1|CI514524 CI514524 Oryza sativa (japonica cultivar-group) 9 leaf-stage leaf Oryza sativa Japonica Group CATGCGGTTGCCCCAACCGCA EST sequence (targeted fragment marked with yellow): GGTTAGGGATAATTTTAACATTTATCTTTTTGTTAATAATCGTACAATCACTACTAAAAAAGTGTTTTTGCATGCGAGCTACAAGGATCTTTTCATGCGGTTGGTTGGTGCAACCGCATGGGCGAGCTCTTCTGNAAAAATCGCTCTTTGGCGTAACCGCATGCGAAAATCCATGCAATCGCATATACCGGCCGCATGCAAAAATAAATTCGGCAANAAAAAAATAAAATCCAAAAAACCCCCAAACCCTAGCCCGTCGCCGGATCCGTCGCCCCCGCCGCCCGCTGTCGTCGGCAGCACCAAATCGGCGCGGGGCACCGCCGACCGAGGAGGCCGCCACGGCGGCGTTGAGGGGGGGGGGGGAGGCCCCACTCCCCCCCA | |||||||||
gi|88204902|gb|CI202753.1|CI202753 CI202753 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft CATGCGGTTGCCCCAACCGCA EST sequence (targeted fragment marked with yellow): CTGACAGGTTTAATCGCATTTCCCTGTAGGTTTTCAGTTATAGGACAGATCCTGATTCGTATTTAATAGCCACGTCTATCATAGTATCACGTTACATACACTACTACAGATATGTTTTTTCCATACGGCTGAGAACCATCTTTCCATGCGGTAAATCGTCTGTAAAAATCACCCTTTTTGCATGCGGCCGGCGCAACCGCATGTGAAAATCCTATTTTCGCATGCGGTTGCTTATACCGGCCGCATGCGAAAATAAATTAAGCAAACAAAAAAAATCGAAAAAACCCTAAACCAAACCCTAGCCCGCCACCGGAGCGCCGCATCCACGCCGCACGCCGTCGCCGGCGGCGGATCCATCGCTCCCGCCAACCCCCGCCGTCGCCGGCGCCGGATCCGTCAGCGGCGGCACCGGATCCGTCACCCCCAACGCTCGGCGTCGTCATCGGCGGCAGATCCGTCGCCCCCGTCGCCTAGCGTCGTCACCGGCGGCGGATCCATC | |||||||||