| mature miRNA: CCCTATCACATCGGATGCTGA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88254368|gb|CI353192.1|CI353192 CI353192 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone CCCTATCACATCGGATGCTGA EST sequence (targeted fragment marked with yellow): ATTAATAGTCTATGTTTAATATTTATAATTAATTTTCAAACATCCGATGTGATAGGGACTTAAAACTTTTAGTCCCATCTAAACAGGGCCTTAATCACCCAACTTCTTACAGTGACAGTATTTTACTCTAGCTTGCAGCTTACTGTTGCTTGTAATGGGTACAAGCACAGAGCTGCTTGCCTAATCTTGTTTACTCCACTAGTAGTAGATTCTTTCTTTTTAGCCCCAAAATTTTTTACAGATATCTGGAAACTTATATTAGCAGCAAGCCTACCATTTTTTTGACTTTTCTTGCTAATAAGAAGTAACAAGCTCTTGTCTTTTGGTGTAGTAATCTTTATATCAGTAAACTACATTACTACCCCTTTTTACTTGTCCTCGTCATTGACTAAGGTTGACCTTTTTTCCGCCGCTGTATCGGCGGAGTTACCGTT | |||||||||
gi|88546894|gb|CI477150.1|CI477150 CI477150 Oryza sativa (japonica cultivar-group) 2 weeks after flowering ear Oryza sativa Japo CCCTATCACATCGGATGCTGA EST sequence (targeted fragment marked with yellow): GGTCCAAGATTATGGATGGGTTTTATTAATAGTCTACGTTTAATATTTATAATTAATTTTCAAACATCCGATGTGATAGGGACTTAAAACTTTTACTCCCATCTAAACAGGGCCTTAATCACCCAACTTCTTACAGTGACAGTATTTTACTCTAGCTTGCAGCTTACTGTTGCTTGTAATGGGTACAAGCACAGAGCTGCTGCCTAATCTTGTTTACTCCACTAGTAGTAGATTCTTTCTTTTTAGCCCCAAAATTTTTTACAGATATCTGGAAACTTATATTAGCAGCAAGCCTAACATTTTTTGACTTTTCTGCTAATAAGAAGTAACAAGCTCTTGTCTTTTGGTGTAGTAATCTTTATATCAGTAAACTACATTACTACCCCTTTTNACTGTCCTCGTCATTGACTAAGGTTGACCT | |||||||||
gi|88719762|gb|CI743272.1|CI743272 CI743272 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CCCTATCACATCGGATGCTGA EST sequence (targeted fragment marked with yellow): GGGTAAAGTTTTGACCTGTCACATTGAATATTATATAGGGTATCGTATAGGATGTTCGAGCACTAATAAAAAAAACCTAATTATAGAATTTGTTAGTAAACCACGAGACGAATTTATTAAGTCTAATTAATCCGTCATTAGCAAATGTTTACTGTAGCACCACATTGTCAAATCATGGAGCAATTAGGCTTAAAAGATTTGTCTCGCAAATTAGTCGCAATCTGTACAATTAATTATTTTTTAGCCTATATTGAATACTTCATGCAGGTTTTTAAACGTCCGATATGATAGGGTGAAAAATTTTAGGGTGAGATCTAAACAGGATCTTTGCCTCAAAATTTTCACAGTAGCGAGCAGCCGAGAAATCAGCTAGTGCCTCAAAAGCAAGATGAAAAGGCCTTAGAAAACATATA | |||||||||
gi|86494755|gb|CI137388.1|CI137388 CI137388 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) Oryza sativ CCCTATCACATCGGATGCTGA EST sequence (targeted fragment marked with yellow): TATTAATAGTCTACGNTTAATATTTATAATTAATTTTCAAACATCCGATGTGATAGGGACTTAAAAGTTTTAGTCCCATCTAAACAAGGCCTAAGATTCATCTCCAGCTCTGAACTTAAAAGAATCTTGCACCTTTGTCCAATGGCTCTTTGACCTTGGGTCTCTGGCCAGAAGTCCTGCCACCGCAACTATTGCAGTGGCAGACCACCGCATTTCTTCAGAATTTTGTCCTTGGTTTCCCTGAACTCGTCCGGGCATGAATCATCACCACTAAAGATTCTTTCATTGAACAGTCGTTTTGATTTCTCATCTGAAAGCCGATCTAGCATGTGGATGTCACCTGTTTGCTGATGAGTGCTGGCGTCAGCTACAGATTTGAACCTTGTTGTCACCACTATTCTACTGCCATTGTTATTTTTGGGCAAAGATCCCCAGATGTATTCCCATGAAGATACAGACCAGACATCATCTACTAAGAGGAAGTACCTCTTTTGTTCCAAATGTGCTGTGAGCTTCTCCTTAAGCTGCTTGTCTGTCCATCTCTCGATCCCTGCAAGAGAGTCTCCATCTGTGCTCTCCTTGTCAGGGACCTGAGGCATGACTTGCCTGAGGATGCTTCTGAGCAGCGCCGCGAGATTGAGCTTCTGCGACGCCTGCACGCACGCCCGGGACTCGAACTTCTCCC | |||||||||
gi|87040470|gb|CI195092.1|CI195092 CI195092 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group CCCTATCACATCGGATGCTGA EST sequence (targeted fragment marked with yellow): TTTAATTTTCAAACATCCGATGTGATAGGGACTTAAAACTTTTAGTCCCATCTAAACAGGGCCTTAATCACCCAACTTCTTACAGTGACAGTATTTTACTCTAGCTTGCAGCTTACTGTTGCTTGTAATGGGTACAAGCACAGAGCTGCTGCCTAATCTTGTTTACTCCACTAGTAGTAGATTCTTTCTTTTTAGCCCCAAAATTTTTTACAGATATCTGGAAACTTATATTAGCAGCAAGCCTACCATTTTTTGACTTTTCTGCTAATAAGAAGTAACAAGCTCTTGTCTTTTGGTGTAGTAATCTTTATATCAGTAAACTACATTACTACCCCTTTTTACTGTCCTCGTCATTGACTAAGGTTGACCTTTTTTCCGCCGCTGTATCGGCGGAGTTACCGTTGGTGGTAGCTTCGTCGGTGGCGGTGTTCTCGCGGAACTTGGCGTAGATGTCCCCCTTGTAGAAGTTCCTTGTCCTCCAGACGAGCACGAGGGAGATGAGCGCGCCGGCGACGGTGGCGGCGGTGATGATGAGGAAGGCCTTCCTGAAGCACTGCACGCCGAGGCAGGTCTTGTCGCCGCCGGCGAGCGAGCCGCCGT | |||||||||
gi|88478299|gb|CI415570.1|CI415570 CI415570 Oryza sativa (japonica cultivar-group) callus suspension-cultured cells treated with CCCTATCACATCGGATGCTGA EST sequence (targeted fragment marked with yellow): CCTCTGATCAGNTGACAAATCATTGTAACAGAGATTGAGTATCTGTGTTACTCCTTCAGGAGTAAGGTGGTGTTTACATCATGGACTTAACTTTACTCCCTGTCTTTAGACACTAATTTAGAGTATTACATATAGACTACTTACAAAACTAATTACATAAATAAAAGCTAATTCACGAGACAAATTTTTCAAGCCTAATTAATCTATAATTAGAGAATGTTCACTGTAGCATCATATAGGNTAATCATGGATTAATTAGGCTCATTAGATTCGTCTCGCAAATTAGTCCAAGATTATGGATGGGTTTTATTAATAGTCTACGTCTAATATTTATAATTAATTTTCAAACATCCGATGTGATAGGGACTCAAAAGTTTCACTCCCATCTAAACAAGGGCTAAG | |||||||||
gi|89181390|gb|CI112896.1|CI112896 CI112896 Oryza sativa (japonica cultivar-group) Panicles two weeks after flowering Oryza sati CCCTATCACATCGGATGCTGA EST sequence (targeted fragment marked with yellow): ATTAATAGTCTACGTTTAATATTTATAATTAATTTTCAAACATCCGATGTGATAGGGACTTAAAACTTTTAGTCCCATCTAAACAGGGCCTTAATCACCCAACTTCTTACAGTGACAGTATTTTACTCTAGCTTGCAGCTTACTGTTGCTTGTAATGGGTACAAGCACAGAGCTGCTGCCTAATCTTGTTTACTCCACTAGTAGTAGATTCTTTCCTTTTAGCCCCAAAATTTTTTACAGATATCTGGAAACTTATATTAGCAGCAAGCCTACCATTTTTTGACTTTTCTGCTAATAAGAAGTAACAAGCTCTTGTCTTTTGGTGTAGTAATCTTTATATCAGTAAACTACATTACTACCCCTTTTTACTGTCCTCGTCATTGACTAAGGTTGACCTTTTTTCCGCCGCTGTATCGGCGGAGTTACCGTTGGTGGTAGCTTCGTCGGTGGCGGTGTTCTCGCGGAACTTGGCGTAGATGTCCCCCTTGTAGAAGTTCCTT | |||||||||
gi|88414874|gb|CI601706.1|CI601706 CI601706 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone CCCTATCACATCGGATGCTGA EST sequence (targeted fragment marked with yellow): TGGGACATTAGGGTCCCATCGGCTTTATTATCCAACTGCCAAATTATCCACTATCTTACGAAATTTCTTTTCAAGGTTACACTGTTTCGGCTCACAATTCAAGTCGAGCCTCAAGAGATACGGAGGATATCATGCTTGGGGCATCAAAATTCTCTTCCTCGATCTCACCTCACCTGTGCGTAGAGAGTAGAGAGAGGAGAGGAGACGGATGGACTTGCGCTGCACATAACCAACTGGTTCTTGCTTCCACGCTTGCTCACTCCCCACTCCCCGTGGAGTCGCGCGGTTTCCCCCCGGTTCCACGCAATTTTTTTTTCTTTAATGAGATTAGTATAATCTGGTTGATTCGTCCAAGACTATCGGGAGCTTGCGCTTATTAGCTTCTTCTTTTCATCCGATGTGGTGGGGTTT | |||||||||
gi|86504026|gb|CI146659.1|CI146659 CI146659 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa CCCTATCACATCGGATGCTGA EST sequence (targeted fragment marked with yellow): ATTAATAGTCTACGTTTACATATTTATAATTAATTTTCAAACATCCGATGTGATAGGGACTTAGAAGTTTTAGTCCCATCTAAACANGGGCCACTGCCAGCAGGCACGAGCAGTAGCGGTAGCTAACGCTACAACGAGTACCTGGCAACAAAATAGATGAAACCGGATCGCCCCATGGCCTGTGCGAACATCCGCCAATCCCCTCGAATAAAGGAAAATATTTGGAGCAGAACAATGCATGAACCGGTACGAATGGAAAGTAAACCTTCCCATACATGACGCTGAACGTAGCTGGAATCGGACGTGCTCGGTCGCTGTTTCTGCTGCTGCTTGGCATCCCACAAATCCTCTGGCACACAGACATGGAAGGATATGCGGGCGTCGGCGGCAGCAAGGTCGGCGAACGGTGGCTCCCATCCAAGGAAGAAGCAATCGTCGCCGCAGCCACTTCAACGACCGCTACCGACATCCCAGCTAACCAACCAACCTTCACTTATCTGACATTCTGAACTGATAATCGTGGAGCACAACAAACCAAATCAAGGCAAGCCGCACTGCCACTGCCACATTCGTCCATCCAGACAAGATACTTCATGGAG | |||||||||
gi|88223276|gb|CI223125.1|CI223125 CI223125 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) and mixed s CCCTATCACATCGGATGCTGA EST sequence (targeted fragment marked with yellow): TATTATAGTCTACGCTTAATATTTATAATTAATTTTCAAACATCCGATGTGATAGGGACTTAAAACTTTTAGTCCCATCTAAACAGGGCCTTAATCACCCAACTTCTTACAGTGACAGTATTTTACTCTAGCTTGCAGCTTACTGTTGCTTGTAATGGGTACAAGCACAGAGCTGCTGCCTAATCTTGTTTACTCCACTAGTAGTAGATTCTTTCTTTTTAGCCCCAAAATTTTTTACAGATATCTGGAAACTTATATTAGCAGCAAGCCTACCATTTTTTGACTTTTCTGCTAATAAGAAGTAACAAGCTCTTGTCTTTTGGTGTAGTAATCTTTATATCAGTAAACTACATTACTACCCCTTTTTACTGTCCTCGTCATTGACTAAGGTTGACCTTTTTTCCGCCGCTGTATCGGCGGAGTTACCGTTGGTGGTAGCTTCGTCGGTGGCGGTGTTCTCGCGGAACTTGGCGTAGATGTCCCCCTTGTAGAAGTTCCTT | |||||||||
gi|86499831|gb|CI142464.1|CI142464 CI142464 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa CCCTATCACATCGGATGCTGA EST sequence (targeted fragment marked with yellow): TTAGACACTAATTTAGAGTATTAAATATAGACTACTTACAAAACTAATTACATAAATAAAAGCTAATTCACGAGACAAATTTTTTTAAGCCTAATTAATCTATAATTAGAGAATGTTTACTGTAGCATCATATAGGCTAATCATGGATTAATTAGGCTCATTAGATTCGTCTCGCAAATTAGTCCAAGATTATGGATGGGTTTTATTAATAGTCTACGTTTAATATTTATAATTAATTTTCAAACATCCGATGTGATAGGGACTTAAAAGTTTTAGTCCCATCTAAACAAGGGCTAAGATTCATCTCCAGCTCTGAACTTAAAAGAATCTTGCACCTTTGGTCCAATGGCTCTTTGACCTTGGGTCTCTGGCCAGAAGTCCTGCCACCGCAACTATTGCCAGTGGCAGACCACCGCATTTCTTCAGAATTTTGTCCTTGGTTTCCCTGAACTCGTCCGGGCATGAATCATCACCACTAAAGATTCTTTCATTGAACAGTCGTTTTGATTTCTCATCTGAAAGCCGATCTAGCATGTGGATGTCACCTGTTTGCTGATGAGTGCTGGCGT | |||||||||
gi|88246116|gb|CI245965.1|CI245965 CI245965 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat CCCTATCACATCGGATGCTGA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAGTCTACGTTTAATATTTATAATTAATTTTCAAACATCCGATGTGATAGGGACTTAAAAGTTTTAGTCCCATCTAAACAGGGCCACTGCCAGCAGGCACGAGCAGTAGCGGTAGCTAACGCTACAACGAGTACCTGGCAACAAAATAGATGAAACCGGATCGCCCCATGCCTGTGCGAACATCCGCCAATCCCCTCGAATAAAGGAAAATATTTGGAGCAGAACAATGCATGAACCGGTACGAATGGAAAGTAAACCTTCCCATACATGACGCTGAACGTAGCTGGAATCGGACGTGCTCGGTCGCTGTTTCTGCTGCTGCTTGCATCCCACAAATCCCTGAAAAGGCCGTCCAGCTCCACCGGAAACACGACCGTGTGTACTGTTCTAGCACCGCCAGCCCAG | |||||||||