| mature miRNA: CCGAGGTTTTCTGGATACATT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|44676192|gb|CR289626.1|CR289626 CR289626 Oryza sativa library (Han B) Oryza sativa cDNA clone y642g02p5, mRNA sequence CCGAGGTTTTCTGGATACATT EST sequence (targeted fragment marked with yellow): GGGGAATCGGCATTATGGCCGGGGGTGGTTTACTATGTCAGCCTGAGGAAAAGTTGCTGTTTGTGGTCCGTATCCGTGGTATCAATGCCATGCACCCAAAGACCAGGAAGATTTGCAACTCTTGCGTTTGAGGCAGATCTTTAATGGAGTGTTCTTGAAGGTCAACAAAGCCACCATTAACATGCTGCGCAGGGTTGAGCCATATGTTGCATATGGGTACCCAAATTTGAAGAGTGTCCGTGAATTGATCTACAAGAGGGGCTATGGAAAGCTCAACAAGCAAAGAATCCCCTCCCTTACAAACAACCAAATGTCATCGAGTGAGGGTTTGGGTAAGCATGCACATCCACTCCTCGCATCTGAGTGATCCTTGTNNTCACTGCGGATTCACTGACTCTGTTGGCCCCACATCTTCAAGGCAGGCCAACAACTTCCTCTGGNNCCATTCACAGCTCGACAGTGGGCACCCACNTGGCGGCTCGCGGCTCGAACGACGAAGAGGAACCACTACGTTGAGGGTGGTGATGCTGGTAACCGTGCAGAACTCACATCAACCGACACTCCATTCAGCAACGGACTGACCCTCAGTTCCATTGAGCTCATTGTTAGCGCACTGTGTTTGGATGATATTTTAAAGTAAGCTTATTTTGCACTAGGAAGTGTATCAAGAAAATCTTGCAATTTTGATATTCAGAATCTGAACCTTTTATCCGGTGGTCTGATGCGAAAAAAA | |||||||||
gi|33802977|gb|CF327359.1|CF327359 NACL--01-N01.g1 Rice callus plasmid cDNA library (NACL) Oryza sativa Japonica Group cDNA clon CCGAGGTTTTCTGGATACATT EST sequence (targeted fragment marked with yellow): AGAGGCCAACAACTTCCTCTGGCCATTCAAGCTGAAGGCACCACTGGGTGGGCTGAAGAAGAAGAGGAACCACTACGTTGAGGGTGGTGATGCTGGTAACCGTGAGAACTACATCAACGAACTCATCAGAAGGATGAACTAGTTCCATGAGCTCATTGTTAGCGCACTGTGTTTGGATGATATTTTAAAGTAAGCTTATTTTGCACTAGGAAGTGTATCAAGAAAATCTTGCAATTTTGATATTTAGAATCTGACCCTTTTATCCGGTGGTTTGATGTTATTCCTAAATTTGAAGTGCTTTTAATCATGATATGCGAACATGTGTTAGTACTTATTATGGCTCTAAAAAAAAAAAAAAAAAAACACTGTTATGCCGTTACGTAGCGTATCGTTGACAGC | |||||||||
gi|29641909|gb|CB646916.1|CB646916 OSJNEb09J22.r OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb09J22 3', mRNA sequence CCGAGGTTTTCTGGATACATT EST sequence (targeted fragment marked with yellow): GTATGATAATAGTAGTTGCTTATATATGTTAAAACTGTTCGCAGTCAATAAAAATTGAATAAGAATTGAGCAGCCTGTTGTACTTCATTCTAATGTCGGTGTGATGAGCAGGAGAAGGAGCTGGTGCAACTTAAGCGTGAGGCTCGGATGAAGGGTGGTTTCTATGTCAGCCCTGAGGAAAAGTTGCTGTTTGTGGTCCGTATCCGTGGTATCAATGCCATGCACCCGAAGACCAGGAAGATTTTGCAGCTCTTGCGTTTGAGGCAGATCTTTAATGGAGTGTTCTTGAAGGTCAACAAAGCCACCATTAACATGCTGCGCAGGGTTGAGCCATATGTTGCATATGGGTACCCAAATTTGAAGAGTGTCCGTGAATTGATCTACAAGAGGGGCTATGGAAAGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCATTCAAGCTGAAGGCACCACTGGGTGGGCTGAAGAAGAAGAGGAACCACTACGTTGAGGGTGGTGATGCTGGTAACCGTGAGAACTACATCAACGAACTCATCAGAAGGATGAACTAGTTCCATGAGCTCATTGTTAGCGCACTGTGTTTGGATGATATTTTAAAGTAAGCTTATTTTGCACTAGGAAGTGTATCAAGAAAATCTTGCAATTTTGATATTCAGAATCTGACCCTTTAAAAAG | |||||||||
gi|40486660|gb|BX898076.1|BX898076 BX898076 Oryza sativa library (Han B) Oryza sativa cDNA clone p748f04p5, mRNA sequence CCGAGGTTTTCTGGATACATT EST sequence (targeted fragment marked with yellow): AAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCATTCAAGCTGAAGGCACCACTGGGTGGGCTGAAGAAGAAGAGGAACCACTACGTTGAGGGTGGTGATGCTGGTAACCGTGAGAACTACATCAACGAACTCATCAGAAGGATGAACTAGTTCCATGGGCTCATTGTTAGCGCACTGTGTTTGGATGATATTTTAAAGTAAGCTTATTTTGCACTAGGAAGTGTATCAAGAAAATCTTGCAATTTTGATATTCAGAAATCTGACCCTTTTATCCGGAAAAAAAAAAATATCAAAAACAAAAAAACTTTCGGCCGCTCGGACCAAGTGCCCCTAACCGAGCAAGGTATGGCTGCGGGCCGAATCAACTCACTGGCAACTCGCCAAACAGCTGTCCAATAATGGCCGGGGTAAAGGTGATAGGAACCGCGGGCACACATCCGTGAGTACCACTACACGCGGAAGAAGCGGCGAGACCCCACAAGCCAGGAGAGCGCACTAGACCGCAGACGCCACACCACCACCCAGAGCTAGTGCGACCGCACGCGACAGCACGTGGGAGCGAGG | |||||||||
gi|29615311|gb|CB620323.1|CB620323 OSIIEa05H01.r OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa05H01 3', mRNA sequence CCGAGGTTTTCTGGATACATT EST sequence (targeted fragment marked with yellow): TTAACATGCTGGGCAGGGGGGAGCCATATGTTGCATATGGGGTGCCCAAATTGGAAGAGTGTCCGTGAATTGATCTACAAGAGGGGCTATGGAAAGCTCAACAAGCAAAGAATCCCTCTTTCAAACAACAAAGTCATGGAGGAGGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTTTGGCCATTCAAGCTGAAGGCACCCCTGGGTGGGCTGAAGAAGAAGAGGAACCCCTACGTTGAGGGTGGTGATGCTGGTAACCGTGAGAACTACATCAACGAACTCATCAGAAGGATGAACTAGTTCCATGAGCTCATTGTTAGCGCACTGTGTTTGGATGATATTTTAAAGTAAGCTTATTTTGCCCTAGGAAGTGTATCAAGAAAATCTTGCAATTTTGATATTCAGAATCTGACCCTTTTATCCGGTGGTTTGATGTTATTCCTAAATTTGAAGTGCTTTTAATCATGATATGCGAACATGGGTTAGTGCTTATTATGGCTCTACTGCCTTTGTGGGAAAAAAAAAAGAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTGTCCCTTAGGAG | |||||||||
gi|29687560|gb|CB683835.1|CB683835 OSJNEf12M11.r OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf12M11 3', mRNA sequence CCGAGGTTTTCTGGATACATT EST sequence (targeted fragment marked with yellow): GAAGTCCATCGAGAGCCGCAAGCTCATCTTCTCCCGCGCCAAGCAGTACGCCGAGGAGTACGAGGCCCAGGAGAAGGAGCTGGTGCAACTTAAGCGTGAGGCTCGGATGAAGGGTGGTTTCTATGTCAGCCCTGAGGAAAAGTTGCTGTTTGTGGTCCGTATCCGTGGTATCAATGCCATGCACCCGAAGACCAGGAAGATTTTGCAGCTCTTGCGTTTGAGGCAGATCTTTAATGGAGTGTTCTTGAAGGTCAACAAAGCCACCATTAACATGCTGCGCAGGGTTGATCCATATGTTGCATATGGGTACCCAAATTTGAAGAGTGTCCGTGAATTGATCTACAAGAGGGGCTATGGAAAGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCATTCAAGCTGAAGGCACCACTGGGTGGGCTGAAGAAGAAGAGGAACCACTACGTTGAGGGTGGTGATGCTGGTAACCGTGAGAACTACATCAACGAACTCATCAGAAGGATGAACTAGTTCCATGAGCTCATTGTTAGCGCACTGTGTTTGGATGATATTTTAAAGTAAGCTTATTTTGCACTAGGAAGTGTATCAAGAAAATCTTGCAAGTTTGATATTCAGAATCTGACCCTTTTAAAAACTTAAAAGAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTGTCCC | |||||||||
gi|163927729|gb|EG710521.1|EG710521 Os5MPREST0219 Rice young panicles Oryza sativa Japonica Group cDNA clone 5MPR-A3E12S, mRNA s CCGAGGTTTTCTGGATACATT EST sequence (targeted fragment marked with yellow): CGGCCGGGCAACGAACTCATCAGAAGGATGAACTAGTTCCATGAGCTCATTGTTAGCGCACTGTGTTTGGATGATATTTTAAAGTAAGCTTATTTTGCACTAGGAAGTGTATCAAGAAAATCTTGCAATTTTGATATTCAGAATCTGACCCTTTTATCCGGTGGTTTGATGTTATTCCTAAATTTGAAGT | |||||||||