| mature miRNA: CCGGTTGGTGTTACCAACCAGGA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88694914|gb|CI738952.1|CI738952 CI738952 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CCGGTTGGTGTTACCAACCAGGA EST sequence (targeted fragment marked with yellow): GTTGTCGGAATCTGTGATATATTTTGTAGAACTCGTGATGTAATTTTCCTAAGAGTTTGTGATGTATTTGGAGATGATCTATTCGAAGATTTGGAGATGTTCTGTGATATGTGAGAATTTGGATTTGGGATTCCTTGGCATGATTAGGGGATGGTGTGAAATCAATATTCAATACTAAAACAATGAAAAAGAGATAAAAAAGAAAAAATATCTTTAGTCCCGGTTGGTAACAACAACCGGGACTAAAGTCTCCCATCTTTACTCCGATTGTCGTTACCAACAACTACAGATTGATTTTTACTCCTGGTTATTTGAACCGGGATCAAAGATAGCGATCTTTACTCCCGGATCCGTAGTCCC | |||||||||
gi|29664347|gb|CB660622.1|CB660622 OSJNEd02J11.f OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd02J11 5', mRNA sequence CCGGTTGGTGTTACCAACCAGGA EST sequence (targeted fragment marked with yellow): CCTTTAAGACAGATCAAATCTCTCCCCCTCTTCCCTTTCCCCTTCCTCTCCTCTCCTACAGTCTATCCTCTCTTCCTCATCCCCTCTCCTCCACCTCCTGCCCTTCCTCCTCTCCTCCCCCTCCTCCCCTTCCCATCCGGCGGGCCGGCGGCCGTGGCGAGCAGTGGCAGCGGCTTTGTTTGTCTTTTTTTATATAATCTGTGATTCACTAAGATGTTTAAATTTGTGATTCAATGCATGGATCTGAGATGTATAATCTGTAATGTATTTGATTTGTGTGTAATTTTTTAGGATTTGTGATGTATTTGATTTTTGTGTATAAGTAACTTTAAGATTTATGATGTAGATTTGGGATGTTACATTGATTTGGGGATTTAGGGTTTGATTTGATTTGGGGATTTGGGGTATGATTTAGGGATATGCATGCCACTTGATTCGGGAGAAAATAAAAAAAGAAAAAAAAGAAAAGGGGATCATCTGGTACTGCCGCTATTCTTTCTTTACTCTCGGTTGATAACATCAACCGGGACTAAAGATCCCTCTCTTTAGTCCGGATGGTCCATCTTTAGTCTTGGATTCCTATTCCGGTTGGAAAACCGAGACTAAAAGGGTTACTAACCGGGAGTAAAAATAGTTTCCACCTATATATAAAGTAAAATATATGACTGATTCAATATGTCATCTGAGGTCCAACGTGTAACGATCGATCCAATCGCCATCGTAGCACCCACTGTGGCGAGAAATTTGTATTTAGACCCCCCGTGCT | |||||||||
gi|88694693|gb|CI738731.1|CI738731 CI738731 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CCGGTTGGTGTTACCAACCAGGA EST sequence (targeted fragment marked with yellow): GTTAAAAAGGGTAACGGACATATTTGATCTTTACTCGGGCATATTTGATCTTTAGTCCCGGTTGGTAACACCAACCGGGACTAAAGATCATCTTTAGCCCCGGTTTTTATTGCAACCAGGACTATTGTGGAATTCGGCCGACCGACGAAAGATGGTTTCTCCACCAGTGGTTATGATTCTTCTGTTTGGAAAGAAAATATAAAAAAGATTATACGAAGGTTCAAAAAAAACTCGTTATTAATCCGATGCTAGATAAACCTTAGGTCAGTGTCACGTATACGAAGAGGGTGAAATGCGATGAGCCTCATCAATTTTATGCCTACAAGAATAATGCATGT | |||||||||
gi|66929560|gb|CX116408.1|CX116408 EI104D17 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl CCGGTTGGTGTTACCAACCAGGA EST sequence (targeted fragment marked with yellow): AAACAACTGTCTCAAAATCAGTTAATTAGTAGCTTAGATAGCAAAGATCATCGGAGGATCGGCGATGGCGGCGGCGCTCAGGACCACCGGCGGCCGGCGGCTGGCGGCGGTGCTCGTCATGATGCTGTTCGTCTTGGCGGCAGCGCTGCTGGAGGCGCCAGCGATGGCCTCCGCCGCGAGGGTGTTGCTTCAAAGTGGACAGCTTCCGACTCCGTATCCGACCTGCAATCCAGGCCAATATCCATGCCCATCGCGTACTACTGTGCCATGATTCACTGGTGGAGAAATCGTTTGTAGTCCCGGTTCGTAATCCCCCTTTAGTCCCGGTTGTCTAATCGGGACTACGAATCCGAGACTAAAAATAGCGATTTTTAGTCCCGTGTGAAATAACCGGGACTAAAGATCGATTTTTAGTCCCGGTTGGTAACACGAACCGGGACTAAAGATCGGTCAGCCACGTGGCTGGCTGATCCATCTTTAGTCTCGGTTGGTGTTACCAACGGGACTAAAGATCTATGTACCATTTTTTTTTATTTGCATTGCCATGTTTGCTGCATGGTTGATTATACACACCATATATATATATATATATATATATATATATATATATATATATATATATATATACATACATATATACATATATACCTATATATATATACCTATATATATGCGCATGTTATATGTCACACAACAATTTACCCGCTTTTCATGTTAAAGGCTCAACTTAATGACACATTTGTTGCCAAATATTAAACCAAGAGAAGAGCCCAATAAAAGAATTATAACGCACATAACAAACGAGACCACATGGAGGCGAAAAAGAACTAAGAGACTG | |||||||||
gi|29629679|gb|CB634688.1|CB634688 OSIIEb14F22.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb14F22 3', mRNA sequence CCGGTTGGTGTTACCAACCAGGA EST sequence (targeted fragment marked with yellow): ACAAAGTTTGATAATCCTATAGTCAGATATTACCCAAGAAACCTAATGAATTATGCTCACTTGGCTGGTTGTAAACAAATTATGTTCAATAGTACGCTGGTTGTAAACAAATAATTCTGGTCCCTAGGAGAAACAAAAGAATATTAATTTGCAGAATAAACCTATAATAACGTTGAAATATAATCGCTGGAGTAAGAGTATCAATTTGCAGAAGGTGCTGCTACATATGCATCTCTTGGTACGATTAATTCGGCGATTTCTCATAGGTAAGTATTGATTAGAGAAGCGGATAAAAAATTTCTCAATATGAATTAATGGTACTTCGATCACTATTAATTACTCCAGCCTCAAGTTACTAATTAAGGGGGGAGATCTACGCACAGCAGCCGATGTGTACTATTCATGTGATCATTAACACAGGGGGAGAAAGGGGTTTTACTCCCGGTTCGTAACCCCCTGTAGTCCCGGTTTCAACCAGGACTAGACTAAAGATCACTATCTTTAGTCCCTGATCTTTAGTCCCGGGTGAAAAAACCAGAAGTAAAAATCCATAAGATAGAGCCTTTTTAGTCCCGGTTGGTAACACCAACCGGGACTAAAGATAGAGCTAGCCTAGCTAGATCGGTTGCTTTATTTTCTTTTCTTCATTGTGTTTTTAATAATTTGATTTCGCTCCATCCCTATCCCAAAATCCCAAATAAATTATCCCCAAATCCTCAAATCCCCAAATCGGCCATATTCAAATAGATCACAAAATCTTAAAACAAAATTACATCACAACTTCTACAAAATTCATCACAAATACATCACATATTCACGCACATCACACACAAATCAAATACACATATCCAAATCACAAATTCT | |||||||||
gi|66927267|gb|CX114115.1|CX114115 EI085N23 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl CCGGTTGGTGTTACCAACCAGGA EST sequence (targeted fragment marked with yellow): TAGTGATTAGTATTACTGGGTAAAGCATTACTCTTTTTTTTTTTTTGTTCATACACCACCCTCCAAAGTTTTATCTACATCCAACATGTGGAATGTGACATTTTGAAATTAATTTCACGTTCATTTTTATCCAAAAGGACACATATTTTGAATAATAACGCATGTGCTACTAGTCGTAGACGTGGAATGCACAATACATAATAATTAAATATTCAAAATTTATGAGCCAATATTACGTATTAACAAATAGATCTCTTCCAGGCACTACACATAGAAAATATTGAAAACACTGGTGGAGAAACCATCTTTGGTCGGTCGGCCGAAATCCACAATAGTCCCGGTTCCACTAAAAACCGGGACTAAAGATGATCTTTAGTCCCAGTTCTAAAGGTTAGAGCTACTTTTTGATCTTTAGTCTGGGTTGGTAACATCAATCGAGACTAAAGATCATTTTTAGTCTTGGTTTAAAAGACGGCAGGTGGTGTCAGACTCCTCCTTTATCTTTAGTCACGGTTGGTGTTACCAACCGGGAAAAAAGATCGACATGCACGGTGCGAGATCGAGAGGACCGAGGCGCACGGGAGGATCAGTTAATAAGTTCCGACCTTTATCTCCTCCTCTCCGAACTCACCCCATCTCTTCCTCTTCCTCCTCTCCACACTCACTCCCATCTCTTCCTCTTCCTCCTCTCATCTCTTCCTCTGATCCGTCTCCTTCCCTCTNCCTCCCAATTCTCAATCTCCTCTGGATCCAACCCTCCCGTCTCCACCCGAATTCTCAAGAAGCGGCGGCCGG | |||||||||
gi|29664345|gb|CB660620.1|CB660620 OSJNEd02J10.f OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd02J10 5', mRNA sequence CCGGTTGGTGTTACCAACCAGGA EST sequence (targeted fragment marked with yellow): CTCACACAGATCAAATCTCTCCCCCTCTTCCCTTTCCTCCTCCTCTCCTCTCCTACAGTCTATCCTCTCTTCCTCATCCCCTCTCCTCCACCTCCTGCCCTTCCTCCTCTCCTCCCCCTCCTCCCCTTCCCATCCGGCGGGCCGGCGGCCGTGGCGAGCAGTGGCAGCGGCTTTGTTTGTCTTTTTTTATATAATCTGTGATTCACTAAGATGTTTAAATTTGTGATTCAATGCATGGATCTGAGATGTATAATCTGTAATGTATTTGATTTGTGTGTAATTTTTTAGGATTTGTGATGTATTTGATTTTTGTGTATAAGTAACTTTAAGATTTATGATGTAGATTTGGGATGTTACATTGATTTGGGGATTTAGGGTTTGATTTGATTTGGGGATTTGGGGTATGATTTAGGGATATGCATGCCACTTGATTCGGGAGAAAATAAAAAAAGAAAAAAAAGAAAAGGGGATCATCTGGTACTGCCGCTATTCTTTCTTTACTCTCGGTTGATAACATCAACCGGGACTAAAGATCCCTCTCTTTAGTCCGGTTGGTCCATCTTTAGTCTTGGATTCCTATTCCGGTTGGAAAACCGAGACTAAAAGGGTTACTAACCGGGAGTAAAAATAGTTTCCACCTATATATAAAGTAAAATATATGACTGATTCAATATGTCATCTGAGGTCCAACGTGTAACGATCGATCGAATCGCCATCGTAGCACCCACTGTGGCGAGAAATTTGTATTTAGACCCCTCGTGCTATATAATATGCCTTCAAGTCAACTTCCAAACACTCCCAGACCTTTTGAGAAAAAAAATTCAAAAATATACTTTTTTTTTCATTGGG | |||||||||
gi|88730993|gb|CI754606.1|CI754606 CI754606 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CCGGTTGGTGTTACCAACCAGGA EST sequence (targeted fragment marked with yellow): GTTAAAAATGAGAGGAGGAGATAAGGTTGAGGAGGAGAGAGGAGTTAAAGGAGAGGAGGAGGTACCTCGATCCGATCGTGCACACCTCTCCGATCTCCGCGTCGATCTTTACTCCCGGTTGGTTTTACAACCGGGACTATAAATAGATCTTTAGTCCCGGTTGGTGTTCCAACCGGGAGTAAAGCGTATGGCGATCTTTTTTCCCGGTTGATGTTATCAATCAGGACTACAAATAGATCTTTAGTCCCGGTTGGTAACACCAACCGGTACTAAAGATTGAAAAGTATCCTGTAGCTTTTAAACCGGGACTAAAGATATTTTTAGTCCTGGTTTTTAATACAACCGGGACTATTGTAAAATCTGGTCGACCGACCAA | |||||||||
gi|88724795|gb|CI748054.1|CI748054 CI748054 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CCGGTTGGTGTTACCAACCAGGA EST sequence (targeted fragment marked with yellow): GTTAAAAAGGGTAACGGACATATTTGATCTTTACTCGGGCATATTTGATCTTTAGTCCCGGTTGGTAACACCAACCGGGACTAAAGATCATCTTCAGCCCCGGTTTTCATTGCAACCAGGACTATTGTGGAATTCGGCCGACCGACCAAAGATGGTCTCTCCACCAGTGGTTATGATTCTCCTGTCTGGAAAGAAAATATAAAAAAGATTATACGAAGGTTCAAAAAAAACTCGTTATTAATCCGATGCTAGATAAACCTTAGGTCAGTGTCCCGTATACGAAGAGGGTGAAATGCGATGAGCCTCATCAATTTTATGCCTACAAGAATAATGCATGTGTATGTGCA | |||||||||
gi|29638159|gb|CB643168.1|CB643168 OSJNEb03L11.r OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb03L11 3', mRNA sequence CCGGTTGGTGTTACCAACCAGGA EST sequence (targeted fragment marked with yellow): TAAATCTATAGTTTTCTTAAACAAGCTTTTAAATATGTAGTTTTGTGATAGATCGTACAAACTATATGTAGTTTTATGAAATTTACTCTTTTTTTTATCTTTAGTCTCGGTTGGGGTTAAAAGATCTTTATTTCAGCAATCGAGACTAAAGATCTATTTTTAGTCCCGGTTGGTAACATCAACCGAAACAAAAGATCGGCATGCGCGGCGAAGAGTACAAGGCATGTGCAAGATCGAGGAGGAGACGGGTGGCCTTATCTCTTCCTCTCTAACCTTATCTCTTCCTCTTCCTTCTCTCCTTTTAACTCCTCTCCTCCTTTCCCTCCCCCATCATCCCCCCTATGATGGATGAGCCGGGCGGCCGGGCAGCGCGGAGGGCCGGGCGGCCGGAGGCCTCGCGGCGGCGGGCGGCGTGGGAGCAGGCTTTTTTTTCTTTTTTTTAGAATTTATGATTCGGATCTGTGTATTTGATTTGTGTGTGATGTGAATATGTGATGTATTGTGATGAATTTTGTAGAAGTTGTGATGTAATTTTTTTTAAGATTTTTGAAGTTTTTAAAGGGCCCGATTTGGGG | |||||||||
gi|58656711|gb|CK045391.1|CK045391 42857siceh_0522.z1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gro CCGGTTGGTGTTACCAACCAGGA EST sequence (targeted fragment marked with yellow): TATAGTCCCGGTTTCCTAACGGGACTACAATCTAGGACTAAAGATAGCTATCTTTAGTCCCGGGCGAAATAACCGGGAGTAAAGATCTATCTTTAGTCCCAGTTGATAACATCAACCGGGACTAAAGAGAGGGATCTTTAGTCCCGGTTGGTGTTACCAACCAGGACTAAAGAGAGGATAGGGACAATCCCGGATGGTCCTTTTTTTTGTTACTTTTTTATTTTCTTCCGAATCGGATGGCATGCACATCCCAAATCAAACCACAAATCCCAAATAAAGTAACATCTCAAATCCACATCACAAATCCCAAATCCACATCACAAATCTTAAAATTACTTATACACACAAATCTAAAACATCACAAATCCTAAAAAATTTACGCACAAATCAAATACATCACAGATTATACATCTCAAATCCATACAATGAATCACAAAATTACATCTAAGTGAATCACAAAATATCAAAAAAAAAAGAGATGGTCGTCTGCGCCGCACGCCT | |||||||||
gi|29623965|gb|CB628976.1|CB628976 OSIIEb04N19.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb04N19 3', mRNA sequence CCGGTTGGTGTTACCAACCAGGA EST sequence (targeted fragment marked with yellow): AGATGCAGCAACTGGTACACGGGCGTCATTTACAGCAGATGCAGCAAATGGTACGCGAGCGTCAGCAACTGGAGGAACGCGAGCGTCAGCAACTGGAGGAACGCGATCGCTACGAGCGCTGGTGGATGCGGGAACCCTTTGCAGTCCCGGTTTCTAACCCCCTTTAGTCCCGGTTTTGAAACCGGGAGTACCAATCCGGGACTAAAGATCGCTATCTTTAGTCCCGGGTGAAATAACCGGGGCTAAAAATCGATCTTTAGTCCCGGTTGGTAACACCAACCGGGACTAAAGATCGAGCTGACCTTTTTTTTTTTGCATGGCCCTGTTGCTGCATATATATGTTTCAATACATATATATGCATACATATATATATATATATGTATATATATATATTATATTATATTATATGTATATACATGCATAATATATATGTATTTATACATATATATGTTATGCAAATGCATATGTACTGTATATAGATATATATATGACCAAAATATATTTACATTATAGAAAATGTGTACACATGCATATAGAAACATATGTAGTCATGTATTAATTACAATCCATTATATGTCCTAGCTAGCTACGATTTCGACGTAGTAGTACTCGCTGCTAGCTCAGAAGCTAAGGACCGGTGAATTGTGTTTCCGTCGTAGTAGAATTCACCCTTGGGATCAAGGATTTCTTCGTTGATGAATCCCATGAGTTGTTCTTGAACCGCCGCGATAAATTCCTTGTGTGTGGTCAGGTTATCCCTCATGCAAATAAACTATATGAATGTATGAAATTGATTAGTAATGAAGCAAGAAATTGCTACGTAATGAAATTTTGAATTTAAAAAAAAG | |||||||||
gi|29668043|gb|CB664318.1|CB664318 OSJNEd09P11.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd09P11 3', mRNA sequence CCGGTTGGTGTTACCAACCAGGA EST sequence (targeted fragment marked with yellow): ATAGTTTTCTTAAACAAGCTTTTAAATATGTAGTTTTGTGATAGATCGTACAAACTATATGTAGTTTTATGAAATTTACTCTTTTTTTTATCTTTAGTCTCGGTTGGTGTTAAAAGATCTTTATTACAGCAATCGAGACTAAAGATCTATTTCTAGTCCCGGTTGGTAACATCAACCGAAACAAAAGATCGGCATGCGCGGCGAAGAGTACAAGGCATGTGCAAGATCGAGGAGGAGACGGGTGGCCTTATCTCTTCCTCTCTAACCTTATCTGTTCCTCTTCCTTCTCTCCTTTTAACTCCTCTCCTCCTTTCCCTCCCCCATCATCCCCACTATGATGGATGAGCCGGGCGGCCGGGCAGCGCGGAGGGCCGGGCGGCCGGAGGCCTCGCGGCGGCGGGCGGCGTGGGAGCAGGCTTTTTTTTCTTTTTTTTAGAATTTATGATTCGGATCTGTGTATTTGATTTGTGTGTGATGTGAATATGTGATGTATTGTGATGAATTTTGTAGAAGTTGTGATGTAATTTTTTTTAAGATTTTGTGATGTATTTGG | |||||||||