miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CCTACATGTCAGTGACTCAAC
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|88983059|gb|CI250663.1|CI250663 CI250663 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat

CCTACATGTCAGTGACTCAAC
||.||||||||.||||.||||
GGGTGTACAGTTACTGGGTTG

EST sequence (targeted fragment marked with yellow):
AAACTCAGAAATAGATTTATCTTATATTTTAAAGTTTTTCGTACAAAATACATCATTTCATTTAATAATTTGTATCATGATGCTCACAAAATCAAGTGGATGATGATCAAGCCCGAATCACTCTCATTTCTTTATTCGATGCGCCTTTCGTCACATCTCCGTTCCATGATTGGAACCGAGAAAAGTGGGTAATCACAAATAAAAACAAGCGATGCCAAACAAAAATGTCCGAAACAGCAGCAAAATCACAATGAAATGAAGCACACGGAAGCAGATCCTCTGACATGCAGTTGGGTCATTGACATGTGGGTTCCACTTTGCTATGGCCCACATGTCAGTGACTGACGACGACGTCGCTGGCCAACTGCTCGATCCGTGTCATGGAACAATGGTGAGCCCTGTGCCACGGAATTTTTCGCGGAAGATGCCGTCCAGCCTCGCTGCCGTCTCCGGCGACATGTGGTTCGCCCAGTCGCCGGCGACGCCCTTCCTGAAGAAGGCGTCGCGCGGCATGCTCTTGTACGACCCCGCCGTGCCCCGCCGGTTCACC



gi|66921910|gb|CX108758.1|CX108758 BI152C22 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl

CCTACATGTCAGTGACTCAAC
||.|||||||||| ||||||
GGGTGTACAGTCAGTGAGTTT

EST sequence (targeted fragment marked with yellow):
GTCGACCCACGCGTCGGGACGCGTCGCGGATGGCGTCGGCGTGGTACCGCGTGACGTACCACCCAGACCGCCGCCGCGGGAAGCGGTTCTGGAGCTTCCCGTGGATCGCCTGCGACAACCTGCTGGCGATCAAGGCGTCGAGCCAGCTCAGGCGGCGGCGGCAGAAGGACGATGACTCCACCGCGGTGGTGCAGATGGACTGCAGCGCCTGATGTGGCAGAGGATTCTCTGACTTTGAGTGACTGACATGTGGGCCTGCTGGATAAGGGATCCATGGGTCAGTGACAAGTTAGAGGGAAATAAATTAGAGGTTCTCTGACGCGCCGTCCTAAGTGAACTTTCAACTGCACAGTTCATTGCTGTGCGCCTGTGCCTGTACGCTGTACAAATCTGGTTCGACTAATCTTAGCTGAGCTGAACAGCAGAGCTCCGGCTCGCAACTTGGAAGAGGAAAGAGTTTGATGATGAACACCTACGTAGAGTAAAAGTTCCTCTTCCTAAAAA



gi|86602499|gb|CI264827.1|CI264827 CI264827 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat

CCTACATGTCA-GTGACTCAAC
||.|||||||| |||||.||||
GGGTGTACAGTTCACTGGGTTG

EST sequence (targeted fragment marked with yellow):
TTTTTTTGCCAACAAAAATGTCCGAAACAGCAGCAAAATCACAATGAAATGAAGCACACGGAAGCAGATCCTCTGACATGCAGTTGGGTCACTTGACATGTGGGTTCCACTTTGCTATGGCCCACATGTCAGTGACTGACGACGACGTCGCTGGCCAACTGCTCGATCCGTGTCATGGAACAATGGTGAGCCCTGTGCCACGGAATTTTTCGCGGAAGATGCCGTCCAGCCTCGCTGCCGTCTCCGGCGACATGTGGTTCGCCCAGTCGCCGGCGACGCCCTTCCTGAAGAAGGCGTCGCGCGGCATGCTCTTGTACGACCCCGCCGTGCCCCGCCGGTTCACCTCCAGCGCCTTCATCCTCTCGAAGCTGCACAACTCCACGACGCTCGCTACGGCGCCGGCGGCCTCCTCGGCGGCCGAGAACGGCCGCCCCATGAACCTCGCCATCGCCCTGACGTGCTCGCCGGCGGCGCCGTCGCGGAGCAGGTCCTCGTACCTGAGTAAGAGCACCCGGTCCGGGCGGGAGACGCTCGCCCGCCAGTAGCCGAGGATGTGGTCCCACATCGGCCCGAACGGCACCGTGCC



gi|88661425|gb|CI454982.1|CI454982 CI454982 Oryza sativa (japonica cultivar-group) 4.5 leaf-stage leaf Oryza sativa Japonica Gro

CCTACATGTCAGTGACTCAAC
|||||||||||.||||| |
GGATGTACAGTTACTGAAGTA

EST sequence (targeted fragment marked with yellow):
GACATCAGATGAAGTCATTGACATGTAGGCCCTAACACCCACAGGTCCACATGTCAGTACATCAGGGGAAGTACGTGTAAGAAAATCTACTTCCTGTTTACCCTGCTGTCAAATGACGTTTACAAGTTTGTAAATATATACAAATTTAACCACCTATGGTTTTGACACATGTAAATGTCATGGAGATAAAAAAAGTTAGTCGTTGGATCGAGTCAACAGTACACAAACATAACAACTTTCAGGGGGATCAATAATGGCATGAGACCACAATTTATAGCCAAATTGTTCGTCACAACTGACAACAGTTTATCATCCCTAAGATCTCAAAGTTTGATTAATGCTCATCAGCTCTTCTGTGCCGGGGACCACACATGTGTATCATCTCATGTAAGCGTNCATCCTGATCATCCTTGCATGCAT



gi|88302020|gb|CI667866.1|CI667866 CI667866 Oryza sativa (japonica cultivar-group) leaf of seedling gamma-irradiated (9.5min), a

CCTACATGTCAGTGACTCAAC
||.||||||||||| | ||||
GGGTGTACAGTCACCGTGTTG

EST sequence (targeted fragment marked with yellow):
ATGGGGACGGTAGTGTGTGGGTGGGAGGAAACAGATCCCCTGACTTTGTGAAATCTGCAGTTGTGCCACTGACATGTGGGCCCCACTTTNTCGCGATGGCTCACATGTCAGTTCCACAACTGTAAAATGCAAACCGCACAAAGTCAGGGGAGTCTCTCGTTCGCGTGCGATGGGGTGTTGGTCTCTTAAGAGTTGAGAATGAGATGGTGTAGTGTNGATTTCATGCGGCTGCGTTGATGTTCCGTGTCGAGGAGTATGGCAAGACTTCCTTCGTCATGGTGTTGTTTTTATTTCCTTGTAACCCGTTTGGATTTTTACTCTGCTTGTTGAAATATAATTGGCAGCTTTTCTGCCTGTTTAGTTTTTTGAAAAAATGTTTGTTGGGTGAGTGGATAGGG



gi|58653329|gb|CK042009.1|CK042009 49463rsiceh_20151.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G

CCTACATGTCAGTGACTCAAC
||.||||||||||| ||| |
GGGTGTACAGTCACGGAGAGG

EST sequence (targeted fragment marked with yellow):
CTCGTTTTGCTTGGATTTTGCCGTTGGCCCGATGATGATTGCGATTTAGACCCTCGCGAATCGATCGATTGGTTGGTTGGTTGATGGATGGATAGATAGATCGGCTCGGATTTGAGGCTCGCCCTTTGCATCTGCAAGCGGGTTGAGGTCCCGAGAATGGCTAGTACGGCGTTGGCTCCTCGATGATCTGGGCGCTGAAACATGCTGGGGGGGTCGGAGAGGCACTGACATGTGGGCCCGCCCACGCGGCAGGAACATGGTTTA



gi|40493875|gb|BX901013.1|BX901013 BX901013 Oryza sativa library (Han B) Oryza sativa cDNA clone y818g09p5, mRNA sequence

CCTACATGTCAGTGACTCAAC
||||||.|||||||| || |
GGATGTGCAGTCACTAAGCTT

EST sequence (targeted fragment marked with yellow):
TGTGTTGGTACCGGGAATTCGCCATTATGGCCGGGGCTGGAGTGCCTGGCGAGGCTGCGGGAGGGCTCGTCGACGTTCCAGGGAACAAGTGCATGATCGACGAGGTCATCGACGTGATCTCGCTCGTCATCGATGCCGCCGTCGTCGCCGGCAGGCTGCTGCACAAGCCTTAGCTTACATAGCCTCAGCCGTGCTGCAGGCACCACCCCTGCCGGCGGCGAACGGCGGCCGGATCGACGGCATGGGCGGCGCGAAGGATGAGCAGTATTGTCCTCTAACTTCGAATCACTGACGTGTAGGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCACAGTCAATAATGACCGTACTACAGAGGATAAAGTGCTTGTGCGTTATTGGGTGGGTGGTACATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCGGGCTGGCGGCTGCGTGCGTCGCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAG



gi|218480452|gb|FG950761.1|FG950761 MA_93-11_07656 Mature embryo cDNA Library of 93-11 Oryza sativa Indica Group cDNA 5', mRNA s

CCTACATGTCAGTGACTCAAC
||.||||||||||| ||| |
GGGTGTACAGTCACGGAGAGG

EST sequence (targeted fragment marked with yellow):
GTGGATCCCCCGGGCTGCAGGCGCGAGAGCACGGGCAAAACTAGGGTTCGGGTTGTCTCGCGGAGGCGGAGAGGCCGCAATCCCTCGTGCTCTCCGATCCTCCGGAGCCCCCGCCGGCCACGGGGAGCTCGCCGATCCGATCAACCGGGGTTCCGGCCTCCGGCCCCGCTTCGGCGGGAGGTTTACTCGTATCCGCTTCCCCTACCGTCTCGTCTTTGCATTTCCGCTCGCTTCGATTTCGCCGTGGCTTGATGCCTCTGATCTCTCTCGTTTTGCTTGGATTTTGCCGTTGGCCCGATGATGATTGCGATTTAGACCCTCGCGAATCGATCGATTGGTTGGTTGGTTGATGGATGGATAGATAGATCGGCTCGGATTTGAGGCTCGCCCTTTGCATCTGCAAGCGGGTTGAGGTCCCGAGAATGGCTAGTACGGCGTTGGCTCCTCGATGATCTGGGCGCTGAAACATGCTGGGGGGGTCGGAGAGGCACTGACATGTGGGCCCGACCACGCGGCAGGAACATGGTTTACTGCTGCTTCTGCTATACTATAAAACCTGCTC



gi|117216630|gb|CT858123.1|CT858123 CT858123 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

CCTACATGTCAGTGACTCAAC
||.||||||||||| ||| |
GGGTGTACAGTCACGGAGAGG

EST sequence (targeted fragment marked with yellow):
GCAACCGGTAATAGGGAAGAGAGATGAGAGAGAACGCGAGAGCACGGGCAAAACTAGGGTTTCGGGTTGTCTCGCGGAGGCGGAGAGGCCGCAATCCCTCGTGCTCTCCGATCCTCCGGAGCCCCCGCCGGCCACGGGGAGCTCGCCGATCCGATCAACCGGGGTTCCGGCCTCCGGCCCCGCTTCGGCGGGAGGTTTACTCGTATCCGCTTCCCCTACCGTCTCGTCTTTGCATTTCCGCTCGCTTCGATTTCGCCGTGGCTTGATGCCTCTGATCTCTCTCGTTTTGCTTGGATTTTGCCGTTGGCCCGATGATGATTGCGATTTAGACCCTCGCGAATCGATCGATTGGTTGGTTGGTTGATGGATGGATAGATAGATCGGCTCGGATTTGAGGCTCGCCCTTTGCATCTGCAAGCGGGTTGAGGTCCCGAGAATGGCTAGTACGGCGTTGGCTCCTCGATGATCTGGGCGCTGAAACATGCTGGGGGGGTCGGAGAGGCACTGACATGTGGGCCCGCCCACGCGGCAGGAACATGGTTTACTGCTGCTTCTGCTATACTATAAAAACCGGCTCTTTTTCCTTTCTTTTTTCTCCTTCTCCCCCCTCCTCCCCCTCCCTCTCTTGCCCCCGCTGCGGCGGGTCGTCCTCGTCCGTCGGGCATCCATCCTCATCCGTCCCTCTTCCGGCGGTACCCCTGGAAAACTTGGCTCCCAGGGGCCCGGCGTTCAAGGGGGCCCCCCCCTATTTTCCCCTAAAAATGGGAAAAACAAAATTTTGTGAAAATCTTGGAGGGGCCAATTTGGGTAAATAAACAGAACCTTTTTCTGTTCCTTTCTCCCCGTTTTGGGGTTTTTTTTCGGGTTTTTTGGTTGCTTTGTGGCCCCCCTCCCGAAACCCCCCCCTGGGGGGGCCACACTCTAAAAAAAACCGCCCCGAGAGGGATAAAGGGGGCCGCACAAAAAATTTTGGTGCCCCCCCTTGGGGGCGCGGGGGGGAAAAACAAACCGCGCGCGCGCCACCCTTGTATTATGTGGTGTTTCCCACTGGGGGGTGGTGGGGGGGAAAAATCGTTCGTCCCTCTAAAAAAATATGTATGTTTTAAATTATTCTTTTCCTTTCAAAGAAAAAAGGGGGGGGGTTTTTTTCTCTCACTTTTTCTCTTTCTCTTCTCTTCCCCCTCTCTATTTTTGTGTGGTTTTGTGTGATATTGATTTTTGTTGTTGTTGGGCAGGAGGGCGCAAGACACGACACATATATGTGTA



gi|117246761|gb|CT843644.1|CT843644 CT843644 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

CCTACATGTCAGTGACTCAAC
||.||||||||.||||. |||
GGGTGTACAGTTACTGGATTG

EST sequence (targeted fragment marked with yellow):
ATTGCACCACAAAACTCGGCGTGTTTCCTCGTGTTCGCGTGTGTTTCCACAGCTTGTTCATCGATCACATAGGGATTCATCTCTAATTTATCCCCAATCTTTTACATTGCTCTCTTAATTAGGCTCTTTCTGTCTATGTACATTGCTCTTATACTATTTTGATACATGCCTTGGCAGGTGATACACACGTACGCTTAGAAATAATTAGATGGGGACTACTGACTAGTCCATCAACCTGTGCAGGAGCACGGAAGAGACTTCTCTGACTTTGTGCGGAAGAGACTCTTCTGACTTTGTGCAGTTTATAGTTAGGTCATTGACATGTGGGCCATATCAAAGTAGGGCCCATATATCAGTGGCACAACTGTAGACTGCACAAAGTCAGGGATCTGTTTTCCAGAAGCGCGGTTAGTAATGTTAAGAGACATAAGCAAAGTTGATAGAAAATATCGGGCCCATATAAATAATAAAAATCATTCTATAATTATTCTACCTATATTCAATCAATATAGTTATCTTAACTTACCTTTTGTAGTTCCTTAAAGCTGTCACCAGCAACTACGGGTCTGCTTCTGTC



gi|117243235|gb|CT850358.1|CT850358 CT850358 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

CCTACATGTCAGTGACTCAAC
||.||||.|||||||||||||
GGGTGTATAGTCACTGAGTTG

EST sequence (targeted fragment marked with yellow):
GAATCGTCCAGAACAAACTCGAGGGAAAGGATGCTCTGACTTAACTGCTGTGTAGTTGAGTCACTGATATGTGGGCCATAGTAAAATGGGGCCCACATATCAGTGACTGACTCAAGTGCAGTTAATTCTCTGCTTCCAAACTCGAGATATCCAGCAACTTCCAGTCCAAAATTGGAGTGCTTGATCCGATTTTTTTCCTTGAAGACAATGGGAAGGAAATGACCACCGGGCTGGGCTTCTCCTAGTCAGTGGCCCATAGACACAGTGTGTACTCAGCCCATGGTACAAGCTTACACAAATGGGCTCCGGCCCATCGTGAAAATGGCCCACGCCTACCCAAACGCACGCACCGGGTCCGAGGACTCTCGACCTCTTCTTCTCGAGCCTCCCCTTCCTCGAGTTGGGGCGATGGTCACGGCCTAACGATCCCCGGCAGTGGGAGGCGACCAAGCCCACAAACAAAAGGCAGAAGGGGCCCGGGAGGAGAAAAGACCCCAAAAAAAGGGGGGAAACGCGGGGAAAAAAAAAAAAAAAACCCGGGAACCCCCCCCCCCCCTCCCCCACACCTTCCCCATTGTGGGGGGAGGGATAACCTGGGAAAAACACCTCCGTGGTCCCCACAAAAATAAAAAGGAGGCCCTTAATAACCGGGGGTTCCCCCTCCCCAAGGCCCCCCCACCCCCGGGGTTCTCTTTCTTTCTAACCACACCAAGAGCGGCGGGGGGGGGCCCCGCCGCTGTATACACACAAAAGGGGGGGCGGCCCCCAAATTACTCCACAGCGGGGCCGGGAGGGACCCCCGCCGGGGGGGATACCCCCCCCACCCAAACAAAAAGAGGGGGTGGTGCGCCCCTCTCCTCCGCGGCCCCGGGGACAGACCCCCCCGAGGGGAGGGCCCCCCCCTCATACTCCTTTGGGAGAGAGCACAAAAAAAAAAAAACTTTTTCTTCTCCCCCTGTGGGCGCCCCCCAATGAGGGGGTGGTGGTTAGCATAAAACAAAAAGATATCATCTGAAGTCCTCGTTGGGTAAGGGCTTCTCACCACCCCCACCCCTCCCTGCCCGCCGCACCCCCTACATTACTACCTGTAGGGAACGGACGGAAGCACTAGT



gi|88572658|gb|CI664229.1|CI664229 CI664229 Oryza sativa (japonica cultivar-group) leaf of seedling gamma-irradiated (9.5min), a

CCTACATGTCAGTGACTCAAC
||.||||||||||| | ||||
GGGTGTACAGTCACCGTGTTG

EST sequence (targeted fragment marked with yellow):
ATGGGGACGGTAGTGTGTGGGTGGGAGGAAACAGATCCCCTGACTTTGTGAAATCTGCAGTTGTGCCACTGACATGTGGGCCCCACTTTTTCGCGATGGCTCACATGTCAGTTCCACAACTGTAAAATGCAAACCGCACAAAGTCAGGGGAGTCTCTCGTTCGCGTGCGATGGGGTGTTGGTCTCTTAAGAGTTGAGAATGAGATGGTGTAGTGTTGATTTCATGCGGCTGCGTTGATGTTCCGTGTCGAGGAGTATGGCAAGACTTCCTTCGTCATGGTGTTGTTTTTATTTTCTTGTAACCCGTTTGGATTTTTACTCTGCTTGTTGAAATATAATTGGCAGCTTTTCTGCCTGTTTAGTTTTTTGAAAAAATGTTTGTTGGGTGAGTGGATAGGGACAATGCTGAGGATATGAG



gi|89173594|gb|CI041487.1|CI041487 CI041487 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone

CCTACATGTCAGTGACTCAAC
||.||||||||.||||.| ||
GGGTGTACAGTTACTGGGGTG

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATGATCAAGCCCGAATCACTCTCATTTCTTTATTCGATGCGCCTTTCGTCACATCTCCGTTCCATGATGGGAACCGAGAAAAGTGGGTAATCACAAATAAAAACAAGCGATGCCAAACAAAAATGTCCGAAACAGCAGCAAAATCACAATGAAAAGAAGCACACGGAAGCAGATCCTCTGACATGCAGTGGGGTCATTGACATGTGGGTTCCACTTGGCTATGGCCCACATGTCAGTGACTGACGACGACGTCGCTGGCCAACTGCTCGATCCGTGTCATGGAACAATGGTGAGCCCTGTGCCACGGAATTTTTCGCGGAAGATGCCGTCCAGCCTCGCTGCCGTCTCCGGCGACATGTGGTTCGCCCAGTCGCCGGAGACGCCCTTCCTGAAAAAGGCGTCGCGCGGCATGCTCTTGTACGACCCCGCCGTGCCCCGC



gi|88998127|gb|CI038012.1|CI038012 CI038012 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c

CCTACATGTCAGTGACTCAAC
||.|||||||| |||||||
GGGTGTACAGTAACTGAGTAC

EST sequence (targeted fragment marked with yellow):
GAGAATTACACAGTACAACGTAACTTTTTTTTTAAGAATTATACAGTACAACGCAGATAGTGGCGGATCCANCTGTTGGGACTGGTTGGTGCGCCAGCCCTAGCTCTAATCCCTACCCCTAATTAATCATTAACAAGTCTAGTTAGTCATTAGTGAAGAAAATTCCCAGACGGCAAAGATGCAGGCTTCCTCACTGCTTCTACTGTCCAAACTGGTAAAATAGAATGGGTTTGTTGGAACCATACCACCCTAATTTTGCAAAATTTGAGATATGCCACCCGTATCTCAATGACATGTAGAACCCACATGAGTCAATGACATGTGGGTCAGGGTGTCATATCACAAATTTTGGAAAATTTGTGTGGCATGGTTCAAATTTTCCCAAATAGAATCTACTCTGAGTATACAAAACAATATATTCACAGATTTTTATGAATATTTTAAGATAGACACAAATCAAAATAGAGAAAATCGTTTCGATCATATGCGCTTTTGGTATTCATGGGAAAATACTTTAGTTGATATATCTTTATTNGTTTTAATCACATTATATT



gi|117242877|gb|CT843616.1|CT843616 CT843616 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

CCTACATGTCAGTGACTCAAC
||.|||||||| |||||||
GGGTGTACAGTAACTGAGTAC

EST sequence (targeted fragment marked with yellow):
GAAGAAGTTGAATCAAACTTCGTCATCAATCAGCAGCAGCAAACCTCCAACAGAAATGCAGTCACCTACATGCATCCATGATCCATGTAGGAGTAAGCAATTATTGTCTTTTTTATAATCCTTTTCCTTTGGTCGTTGTATAACTTTACTTCATTAGCTTGGCCCATCTTGTTTTTGCTGCTACTGTTCTCTCCGGTTTAGAAGGTAAGATGATATTCTGTTTTTTTCATACTGAATTTATCGAAATATGTAATGACATCTACATGACTTAAATAGTTTTATTAAGTCCATCGTTTCCTTCAGACACTTATTAAATAGGGTAATTTGAAACCATACCATTATAATTTTTCAAAGTTTAAGATATGACATCGGTATCTCAATAACATGTATGACCCACATGAGTCAATGACATGTGGGTCAGGATGTTATATCTCAAATTTTGCAAAATTATAATGGTATGGTTACAATTTTTCCTATTAAATATGGTGTTAAAATATTATTACGTCTGTTCTATAGACTTAATTAAATTTAAATTTAAAAGTTTGACTTATAACAAAACCGAACCAGCTTACATTCTAAAAATGAGATAGCAACTAGCATCTGCTCTCTGCAAAGCATTCAATCACATGTGTAAACAATGTTGATGTAGATTAGTTCCCTGTTTCTCCCGTTGACAATGGTCTGAAGTACTGATCTGAACATGCTGAAAGAAAAAGAGTTAAAAGAACACATATGTAAAACAGTTAGTTGGGTTGTCCTGGCATGATGATGATGATGATGATGATGGCTACAATTAATCTCAGCTGTTATGATGCCTATCGAGTCAGCAATTCAGGCATCCCTGTGAACTTTCTAAGTGATGAAACCACTGTGTGCC



gi|88663411|gb|CI481787.1|CI481787 CI481787 Oryza sativa (japonica cultivar-group) 4.5 leaf-stage leaf Oryza sativa Japonica Gro

CCTACATGTCAGTGACTCAAC
|||||||||||.||||| |
GGATGTACAGTTACTGAAGTA

EST sequence (targeted fragment marked with yellow):
GACATCAGATGAAGTCATTGACATGTAGGCCCTAACACCCACAGGTCCACATGTCAGTACATCAGGGGAAGTACGTGTAAGAAAATCTACTTCCTGTTTACCCTGCTGTCAAATGACGTTTACAAGTTTGTAAATATATACAAATTTAACCACCTATGGTTTCGACACATGTAAATGTCATGGAGATAAAAAAAGTTAGTCGTGGGATCGAGTCAACAGTACACAAACATAACAACTTTCAGGGGGATCAATAATGGCATGAGACCCCCATTTATAGCCAAATTGTTCGTCACAACTGACAACAGTTTATCATCCCTAAGATCTCAAAGTTTGATTAATGCTCATCAGCTCTTCTGTGCCGGGGAACAAACATGTGTATCATCTCATGTAAGCGTTAATCCTGATC