| mature miRNA: CGCGAGATAAATCTATTGAGC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88832290|gb|CI017524.1|CI017524 CI017524 Oryza sativa (japonica cultivar-group) green shoot Oryza sativa Japonica Group cDNA CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): TACTGGTAACACCATGTCAAATCATGTATCAACTTAAGCTTAAAAGATTTGTCTTGCAATTTACACACATGTATCCAAACATTCGATGTAACATGGTGGTCCAAAGCTAAGAAAAATGTACTAGTGCTAAAGATATTGGGGGTCTGTGCGTTTTACCTCTTAATTCGTGGTACGATAATATGGATTGAATTAGAGGGAGCAGCCACCTCTGCTGCTCTAAGGGAACGGCATTTATTAAACCACTATTTTTATTCATGCCAAACACCAGCACTAGTCCAGTGACAACCAAACGACAATCCTACACTCCAAAAGTTTACATTTAGGTTCTCAAATAGTGATACATAGCTTTGAGAGTTGAAACCGTCAGATACTGACATAGTTTATGAGGTGCCCCTGGAGTTGGCAAAAACTTCACGAAGATTGTCGCAGCTCTGGACGCACAAAGTCTGCATCAGCAGGCACTGAAATGTCAACGGTGGGCCTCAACTGAGCACAGACTTCAATGGCACTATGGACGG | |||||||||
gi|88512123|gb|CI439629.1|CI439629 CI439629 Oryza sativa (japonica cultivar-group) leaf of seedling gamma-irradiated (4min), aft CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): GTTTAGATCCAGGGACTTAACTTTAGTCCCTGTCTTTAGACACTAATTTAGAGTATTAAATATAGACTACTTACAAAACTAATTACATAAATAAAAGCTAATTCACAAGATAAATTTTTTAAGCCTAATTAATCTATAATTAGAGAATGTTTACTGTAGCATCACATAGGCTAATCATGGATTAATTAGGCTCATTACATTTGTCTCGCAAATTAGTCCAAGATTATGGATGAGTTTTATTAATAGTCTACGTTTAATATTTATAATTAATTTTCCAAACATTCCGGAATAATTTGGGATTAAGGGGGGACCTNTAAAAAAAAAAAACTAAAGTTTTTTTTCCAATTCCT | |||||||||
gi|88971791|gb|CI390414.1|CI390414 CI390414 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): GCTTAAAAGATTCATCTCGCAAATTAGTCACAATTTTGTGTAATTAGTTACTTTATACATGTGTTCAAACGTTCGATGTGAAAAGATGTAAAATTTTGGGGTGGGATAGCCTTACTAATACTACCACATGTGTTTCTCACTCTACTTTTCGGAGTTGCACTGCTCAGCCGCGCGGCGGCGCGGGTGTTGGGTGGACTTCGACGCGCGCACCTCGCTTGTCAACGTCACCATGGCTCCCCTCGAGCTGCCCAAACCGTGGACGCCGTTGCTCTCCGCCGCCGTGAACCTCTCGGCTGTGATAGAAGACGAAGCCTACGTCGGCTTCTCCTCGTCCACCGGCGTCGTCGCGAGCCGCGCGCCACTACGTGCTTGCCTGGAGCTTAAAGATGGACGGGCCAGCACCATCGCTAAATGTATCAAACCTGCCGGCGTTGCCTGTCAC | |||||||||
gi|117246852|gb|CT843703.1|CT843703 CT843703 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): GAGGCCGGAGGAGCTTCGTCGGGACCGGTCAAGCTCGAAGCCCGTCGTGCTCGTGGTCAGCCAGGCGATTGGAGGCGAATTAGATGGCGATGGCTTGAGGGGAGGAGAAGAGATGGAGAGCTTACGCAAATGGAAGAGAAAGTTTCTCTTAACTGCAGGTCGATTTAAACTGTTCGTTGCATCTCCTTTGTTTAGGATGTGCCAAATTTAATATTGGAGCTGTGGGTGCTTCCTATTTTTAATAGAAGGACAGCAGCAACAAATTTCACAGGAGCAGCAAAAAGGGTTGCAGATTCAGATCAGGTGCTTTGTGTTTTTAGGCCATTTACAATGCAAGGACGAGGCGTGTGGCAATGTAGAGCCTGTGTTGCAACTAATTTGCGAGACGAATTTTTAAGCCTAATTGCTCTATGATTTGATAATTTGCTATGACAGATTAATTAAGCTTAATAAATTCATCTCGCGGTTTATTGATAAAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTACCAAAAAAGCCCCCCACCGATTCCCCCTTTCCCCAACATTTGGCCCAACCCGGAATTGGGGAAATGGGGAGCCCCCCTTGGTAACGGGGCCCTTTTAACCGCGGGCGGGGGGGGGGGGGGTTTTCCCCCCCAAGGGGGGGCCCCCCTTACCCTTTGGGCCGGGGGCCCCTAAGGGCCCCCCGCTCCCCTTTTTTCCTTTTTTTTTTCCCCTTTTCCTTTTTTTTTTCGCCCCCCGTTTTTTTCCCCGGGGGTTTTTTTCCCCCCCCTTTCAAAAAGGTTTTTTTAAAAAAATCGGGGGGGGGGGGGCCCCCCCCCCCTTTTTTTTGGGGGGGGGTTTCTCCCCCCAAAAAATTTTTTTTTTTGGGGGGGTGTGTTTTTTTTTTTTCGGGCGGGGGCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCC | |||||||||
gi|88489019|gb|CI426290.1|CI426290 CI426290 Oryza sativa (japonica cultivar-group) germinating seeds Oryza sativa Japonica Group CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): GTAAGCTGAAACATGAAAATTGAGGTTGAACAAGCATCTCGCTTACAAATCATACCATTGAACTTGCACAATAACATAGACTACAAACAAAGTACTAACTGATTGCAGGTACTAAACTGCTATTAACTGATAATACATTATCTAAAGAAAAGTAACTGATAATAATCTAGACCACAAACGACTGAGGTGGTGTTTGGATACATAGACTAAACTTTAGTCTCTATCACATTGAATATTTAGACATTAATTTGGAGTATTAAACATAGATTACTTACAAAACTAATTACATAAATGAGAGCTAATTCGTGTGATAAATTTTTTAAGCCTAATTAATCTATAATTAGCACATATTTACTGTAGTATTACATATGCTAATTATGGATTAATTAATCTCAATAGATTTGTCTCGTGAATTAGTCCAGGG | |||||||||
gi|66932230|gb|CX119078.1|CX119078 POLLNM01 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): TTTTATGATTTAGGGTCACGGATTAGATTTTGATCGCTTTTGAGGGTCACAAAGTGAACTTATTCCTTTGACATTTGCTGAGACCTACAGGTTGGTATGTTGCGCGGTAGTTCGTGCACCGCAAATAGAAAATGACAAAAGAAACACCACCACCGTGAATGCCAGAAAACAATGAGTGTGATGAGTAAGGACGAGACGAGGGAATCTGAAGTTGGGCCGCCCCTTCTCATTCTAGCTTAAGGCCTTGTTTACTCGGAGAAAATTTTTGGGTTTGGTTGTCACATCGGATATACAGACACACATTTAAAGTATCAAACGTAGTATAATAATAAAACAAATTACAGATTCTGTCAGAAAACTGCGAGACGAATTTATTAAGCCTAATTAATCCGTCTTATTAAGCCTAATTAATCCATCATTAGCAAATGTTTACTGTANNACCACATTGTCAAATCATGGCGTAATTAGGCTTAAAAGATTTGTCTCGCCCCCTACACACAAACTGTATAATTGGTTTTTTTCTTATCCACATTTAATACTCTATACATATTTCTAAACATTTTGATTGATGGGTGAAATGTTTTTGATTTGGGAACT | |||||||||
gi|88512122|gb|CI439628.1|CI439628 CI439628 Oryza sativa (japonica cultivar-group) leaf of seedling gamma-irradiated (4min), aft CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): GTTTAGATCCAGGGACTTAACTTTACTCCCTGTCTTTAGACACTAATTTAGAGTATTAAATATAGACTACTTACAAAACTAATTACATAAATAAAAGCTAATTCACAAGATAAATTTTTTAAGCCTAATTAATCTATAATTAGAGAATGTTTACTGTAGCATCACATAGGCTAATCATGGATTAATTAGGCTCATTAGATTTGTCTCGCAAATTAGTCCAAGATTATGGATGAGTTTTATTAATAGTCTACGTTTAATATTTATAATTAATTTTCAAACATCCGATATGATAGGGACTTAAAAATAGTTTCATCTAAACAGGGCCTCAGTCGTCTCTCCGGAATTTATTCTGGTGAAGTCACCAATCTATCGCAACGAAACAAGACGCGGTTGACCAATGATCAGCAATCAGCG | |||||||||
gi|58693845|gb|CK082532.1|CK082532 85640rsicen_28528.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa Indi CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): CTAGTGGATCCCCGGGCGCAGGAAGAATGGAGAGTCCTGCATTAAATCCGAGAAAGTTATTAAGAGGATAGGTTGTTGGATTGAAATATGCCTATCAAAAATAAATTTTTTATATTTAGAAATATGCCTATCAAAAATAGATGGAGGGAGTATCACATAGGCTAATCATGGATTAATTATGCTTAATAAATTTGTCTCGCAAACTAGTCTAGGATTATGGAATGGATTTTGTCATTAGTATACGTTTAATACTTCTAATTAGCGTCAAACATCAGATGTGACGGGAACTAAAATTTAGTTCTTGATCCAATCAGGGCCTCAATT | |||||||||
gi|33824651|gb|CF338135.1|CF338135 JMT--08-N23.b1 AtJMT-overexpressing transgenic rice plasmid cDNA library (JMT) Oryza sativa J CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): GGACTGAGGAGTAGAAACATGATCGATGTATCAACCTCTGGCGATAGGTTCATAAGGATTTGATTCCCGATTGTCGTTGCTTTATGCAGAAGCTGGAGGCCTTGTTGGCATTTGTAGGTTGTTTAGGGCCTGTTTAGTTCGCGAAAAGAAAATTTTTTGATTGTCACATCGGACGTTTGACCGAATATCGGAAGGGGTTTTCGGACACGAAGGAAAAAACTAATTTCATAACTCGCCTGAAAACCACGAGACGAATCTTTTAAGCCTAATTAATTTGTCATTAGCACATGTGGGTTACTGTAGCACTTATGGCTAATTATTAACTAATTAGGCTCAAAAGATTTGTCTCGTGATTTCCCCCCTAACTTTGTAATTAGTTTTTTAATTTATCTATATTTAATATTTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC | |||||||||
gi|89169620|gb|CI109979.1|CI109979 CI109979 Oryza sativa (japonica cultivar-group) Panicles less than 5cm stage Oryza sativa Jap CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): TTTAGATGGGAGCATAAACTTTTAAGTCCTTATCACATCGGATGTTGGATATTAATTACAAATATTAAACGTAGACTATTAATATAACACATCCATAATCTTGGACTAATTCACAAGACGAATCTATTAAGCCTAATTAATCCAGACGAATCTATTGAGCCTAATTAATCCATGATTAGCCTATGTGATGCTACAGTAAACATTCTCTAAATATAGATTAATTAGGCTTAAAAAATTTATCTCGCAAATTAGCTTTCATTTATGTAATTAGTTTTGTAAGTAGTCTATATTTTAATAGACTAAATTAGTGTCTAAATACAGAGACTAAAGTTAAGTCCCTGGGATCCAAACACCACCTAAAGCCCTAACAAGAGATCCATGATCTCAGATTAAACGTCATACAGACAATTCACCCATATTACAATGCATTGCCATATCTCAAAGGCACTAAAACTTATTCTCGAATCCTAGACCATCGATCTCATTCGCTTTCCATAGCAGGATCTCAATCTCCAACAGAAGCTC | |||||||||
gi|29660336|gb|CB656611.1|CB656611 OSJNEc11C19.f OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc11C19 5', mRNA sequence CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): CTGGCAAGTTTTTTCATCCTGTCACATCGAATGTTTGGACACATGCATAAAATATTAAATATAGACAAAAAAACTAATTACACAGATTATGTCTAAATTGCGAGATGAATCTTTTAAGCCTAATTGCTCCATGATTTGACAATGTGGTGCTACAGTAAACATTTGCTAATGATGGATTAATTAGGCTTAATAAATTTGTCTCGCAGTTTACAGGCGGAATCTATGATTTGTTTTATTATTAGACTACGTTTAGTACTTCAAATGTGTGTCCGTATATCCGATGTGTCACGACAAAAATTTTCACCCCTGGATCTAAACACAGCCTAAAGCAATTTGCCTTGCAGGTTCATGAATAGATTGATGTTTTGATGATATGACCAATCTGCTGCTAAAAATGTGCTACAGGTACCCAAATCTCAAGCCTTATTATGGCACTGAATAACTTGAACCGAAAATTTGATGTTATATAAATTAAGTAGATCTCATCTACTATAAAGATCTTCAGTAGCCATGTTTAATGAAATCATGAGGTAAGTACATATTCATGTTTTTTAGAAAACTAGAGCTTCACATAGACACATATCTAATTTGCTGTCACTAGGAAGCTTGTTGTTAGAGGATTTTACAGTTTTCTGAAGTTTGAAATTAATTCAGTTCCTTTTTAATGGAGGTAGTCTTGGTACATTGGCTCATATATATACGTGTTTCAAATTAGTGTATTACTTGAGTTCATTTTTTGAGTGGATTATTCAGTGATAATGTACTCTACCATTTTTTCTTTTCTTCTTCTTTTATCACAGATTGAGCCATTGGATTGTTTTTTCATCGTTCACTATCTTACTATGGTAGAAAACGAAACTTTAATCT | |||||||||
gi|163923519|gb|EG711138.1|EG711138 Os5MPREST2685 Rice young panicles Oryza sativa Japonica Group cDNA clone 5MPR-N2A05SA, mRNA CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): TTTGACGTTAATTTAGAGTATTAAACATAGACTAATTTAAAAATTAATTTCATAAATGAGAGCTTATCTGTGAGGCGAATTTTTTAAGCCTAATTAATCCATAATTATTAAAAGTTTACTATAGCATCATATTGTCAAAGTCATGTTGTAATTAGACTTAAAAGATTTGTCTCGCGAATTAGTCTAAACTTATGAAATGGGTTTTGTAATTAGTGGATGTTTAATATTTTAAATTAGTGTTT | |||||||||
gi|88725448|gb|CI748707.1|CI748707 CI748707 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): AAATAAACATTTGCTAATGACGAATTACTTAGGCTTAATAGATTCATCTCGCGGTTTACAGATAGAATCTGTAATTTATTTTGTTATTTGTCTATATTTAATACTTGAAATGTGTGTCCGTATACGTTAAAAAAATTTAACCAAACAACTAAACACGGCCTATGACGAAAATGCATCATCACGTGTACTAGCCCAACTAGTTTATAAACTGTAGGCCTATTCTATAATGAATTTTTCCATTCAATCTCATACTTACAATGAGACCTGCAGGTAGCTGTGTGGGTCCATGAGAATCCTGCCTACCAAATTCATGACAGAATACTTCATCCGAACTTCATAATGATGGATTTTGCTGTGTT | |||||||||
gi|88997479|gb|CI390145.1|CI390145 CI390145 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): GCTTAAAAGATTCATCTCGCAAATTAGTCACAATTTTGTGTAATTAGTTACTTTATACATGTGTTCAAATGTTCGATGTGAAAAGATGTAAAATTTTTGGGGTGGGATAGCCTTACTAATACTACCACATGTGTTTCTCACTCTACTTTTTGGAGTTGCACTTGCTCAGCCGCGCGGCGGCGCGGGTGTTGGGTGGACTTCGACGCGCGCACCTCGCTTGTCAACGTCACCATGGCTCCCCTCGAGCTGCCCAAACCGTGGACGCCGCTGCTCTCCGCCGCCGTGAACCTCTTGGCCGTGATAGAAGACGAAGCCTACGTCGGCTTCTCCTCGTCCAGTGGTGTCGTCGCGAGCCGCGCGCCACTACGTGCTTGCCTGGAGCTTCAAGATGGACGGGCCAGCACCATCGCTAAACGTATCAAACCTGCCGGCGTTGCCTGTCACGA | |||||||||
gi|66922917|gb|CX109765.1|CX109765 EI002M13 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): TGAAAAAAAAACCAATTACACTTGTTGTGTGTAAATTGCGAGACGAATCTTTTAAGGCTAATTGCGCCATGATTTGACAATGTGTTGCTACAGTAAACATTTGCTAATGACGGATTAATTAAGCTTAATAAATTTGTCTCGCAGTTTACAGGCGGATTATGTAATTTGTTTTGTTATTAGACTATGTTTAATACTTCAAATGTGTCTCCGTATATCCGATGTGACACGCCAAAACTTTACACCCTGAATCTAAACACCCCCTAAGTCAGTCATTTTGGTTCTGAGACTAATTTTGTCATGAAACCTGTCCTGTTAAGCTTATAGTTGTTGGGTCAGCTATTCAATGTTGCCTATTTCAATCTTTGCACCTCCTCTCAAGTTATAACTGTACTGTAAGTTTATATGGTTCACTGTAAATCTTGCCTTCTCGACCACCTCTTAAGAATGGTAAATTTCTATATGTATGTAATTCCTGTGAAAAGAACAGAAATTTTCATCTTAGTCATAGGCTCATATTGTCATTGTAGTGTGGTACTGGATGGTTATTCAAGTCCCAATACTTGTATTGGAAGTTTGAT | |||||||||
gi|86822499|gb|CI358021.1|CI358021 CI358021 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): CGAATCTTTTAAGCTTAATTATGTCATGATCTGACAATGTGGTGCTACAGTAAACATTTGCTAATGACTGATTAATTAGGCTTAATAAATTCATCTCGCAGTTTACATAGGGATTATGTAATTTGTTTGGTTATTAATCTAGGTTTAATACTTCAAATGTGTGTCCATATATCTGATATGACGTAGCAATGTTTTTTTTTTTTTTTTTTTTTTTTGCCGGTGGAACTTTACACAGCCCAAAACTATATTGAAGGGAGCCAAATTGTACTTTTTTCCAACCGCAATATCCGTTCCGCTGCGGTGCGTTGCCACTGCATGGGTCGGGCAGCAGATGGGGAGGTGAGAGTGGGAAATCACATCCATGTGTTGGCCAATTTCATAGTGGGCCGTAAAAACCTGGCGCTCGCGTCTGATCGGGCCCATCTGATCACCGCATCCATGG | |||||||||
gi|87004753|gb|CI306837.1|CI306837 CI306837 Oryza sativa (japonica cultivar-group) UVC irradiated shoot Oryza sativa Japonica Gr CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): GGTCCGCTTTAAAATAGTTATCTTTCTAAAATTTAAAATTTATCCTGAAAGACTTATCACTCTAGTTACTACTTATCACATTCATCTCTTTTCATTCAAATTTCTTTCTATTATTGTATTTTTCAAGTACTACTCAACTTTCAACCGTATATCATTTAGGCCCTGTTTAGATCCCACTCTAAAATTTTTCATCCTGCCACATCGAGTATTTGAACACCAGCATGAAGTATTAAATATAGGCTAAAAATAACTAATTACACAGATTGTGACTAATTTGCAAGACGAATCTTTTAAACCTAATTGCTTCATGATTTAACAATGTGGTGCTACAGTAAACATTTGCTAATGACTGATTAATTAGGCTTAATAAATTTGTCTCGCG | |||||||||
gi|117211619|gb|CT851670.1|CT851670 CT851670 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): ATGAAAAGCAAAGCGAGCAGCTGAGCCCCGACGAGGTGGGGGAGAGATGAGGGCGGTGGTGATCGCGCGCGCCGGCGGGCCGGAGGTGCTGGAGGAGCGGGACGTCGGGGAGGGCCTCCCGCCGCCGGGGGAAGGCGAGGTGCTCGTCGGGGTGTCCGCCGCCGGCGTCAACCGCGCCGACACCGTCCAGCGCCAGGGCCGGTACCCCGCGCCGCCCGGCGCGTCCCCTTACCCGGGCCTCGAGTGCTCCGGCACCATCCTCGCCCTCGGCCCTAACGTCCCCTCCCGCTGGGCCGTCGGTGACCAGGTGAATCGGTGATTGCCGCCGCCGCTGCCGTTTGGATTAGGACGTTAGGTTAGGGCGTGTTTAGATCTAGGGTTTAAAGTTTTAGCATGTTACATCGGATATTATATAGGGTGTCGCATGAGGTGTTCAGGCACTAATAAAAAAATTAATTACAAAATCCGTCGCACTAATAAAAAAACTAATTACAGAATCCGTCGGTAGACTGCGAGACGAATTTATTAAGCCTAATGAATCCATCATTAGCAAATGTTTACGGTAGTACCACATTGTCAAATCATGGAGAAATTAGGCTCAAAAGATTTGTCTCGCAAATTAGTCGCAATCTGTGTAATTAGTTATTCTTTTAGCATATATTTAATACTTCATGCAGATGTTCAAACGTTCTATGTGATAGGATGTAAAATTTTGGGAGATTTGTTTTTTCCCTTGCAGGTGTGCGCGCTGCTCAGCGGCGGCGGGTATGCGGAGAAGGTGGGTGGTGCCGGCGGGGCAGCTGCTCCCGGTGCCGGAGGGGGTGTCTCTGACGGGCGCCCGCCGGCTTGCCCCGGGTGGGCTGCACCGTTTGGTCGACCGTTTTCTGACAGCCCCCTCTTCCCAGCGATCGTTCTTATCCTTGGGGGGTTAGTGGAATTGGGTCCTTTGCTTTTCAGATTGAAAAGCCCTTTGGATTTAAGGTTTTTTTTTTTGCGGGTGTTGGGGAAAAATTAATTTCCCTCAAAGGTTTGGGGGGCGTTTTTTTTTTACCATCAAAAATTGAAAATTTTCTTTTCCCGTTGTAAAAAAAAAAACAAATTGAAAGGGGGGGTTTTTTTTTCTTTTTTGGCAAAACCTTCGGGGGGTTTTTTTTTTTCTTTGCGGGCCCCCTTAAAACGTTTTTTTTGTTTTGGTTTGTGGAAGATTTTTTTTTTTATTTTTTTTTTTTTTTTTTCAAGAAAGGAGGGGGCCTCTTTTTTTATTTGTATGTAATATAGGAACCTCTCCCGCCACCACCCCCCCCCCCTTTCCTTTG | |||||||||
gi|88843439|gb|CI372339.1|CI372339 CI372339 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): GGCTTAAAAAATTTATCTCGCAAATTAGGTTTCATTTATGTAATTAGTTTTGTAAGTAGTCTATATTTAATAGACTAAATTAGTGTCTAAATACAGAGACTAAAGTTAAGTCCCTGGATCCAAACACCCACCTAACGCCCTAACAAGAGATCCATGATCTCAGATTAAACGTCATACAGACAATTCACCGATATTACAACTGCATTGCCATATCTCAAAGCCACTAAAACTTATCCTCGAATCCTAGCCCATCGATCTCATTCGCTTTCCATAGCAGGATTTCAATCTCCAACAGAAGCTGTGGAAACTCACCATATAAGCATTCCTCTACCTCCAATTGACTATAAGCAAAGATCACAGATGTACGTAAAAATGAGAGCGGACATTCCAGTTAAAGCTCATGT | |||||||||
gi|86850710|gb|CI309522.1|CI309522 CI309522 Oryza sativa (japonica cultivar-group) BAP treated callus Oryza sativa Japonica Grou CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): TAGATGTCACATAGGATGTTTAACCGGGTGTTAGAAGTGGTTTTCGAACACGAATGAAAAAAAACTAATTTAAATCGTGAGACGAATGTAACCCACATATGCTAGCTNATGGCGGATTAATTAGGCTCAAAAGTTTCATCTCGCGATTTCCTCCTAACTGCGTAATTAATTTTTTAATATATATTTAATGCTTCATGATGTTTCCAAAAATTCGATATAATGTTTTTAAGAAAAATTTTTTTTGGAACTAAACCAGGACTTGTGTTTGTGTACATGCAGGTGCACGCTGAGACGTACGCGTTGGTGGTGAGCACGGAGAACATCACGC | |||||||||
gi|88730820|gb|CI754433.1|CI754433 CI754433 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): ATAAAAAAACTAATTACAGAATCTGTCAGTAAACCTCGAGAAGAATTTATTAAGCCTAATTAATCCACCATTAGCAATATTTATTGTAGCACCACATTGTCAAATTATGGAGCAAATAAGCTTAAAAGATTCATCTCGCAAATTAGTCGCAATCTGTGCAATTATTTATTTTTTAGCCTATATTTAATACTTCATGCAGATGTTCAAACGCTCGATGTGACAGGGTGAAAAATTTTAGGGTGGGAACTAAACAGGGCCTTAAGTTATCCTCTTTTGATGCATGGTGAAATATATGATGTAAAGATTATTGCTTCAGTTTTATTATTTTAAACGCCACTGCTTCAGTTTTATAATATAGAGATATACCATAT | |||||||||
gi|58682111|gb|CK070798.1|CK070798 66869rsicem_25823.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): GCTGCAGGAATCGCACGAGGCCTACCGGATGCCTGAGAGAGGCTATGGACGCCGAGCCGGTGGTGGTGGCTATGACAGGTAAGGTTGCTCCCTTGGCTCTTGTTGCATTAGATACCTGAATTCCAAGCTGGAAAACGTGCTGTTCCTGTTAGCCCTGATGAATGTTAGATTGCTGTAGCTTTGTACTATTTGAAAGATGCATTCCTGGATTTAATGAACGTTGTTGTATGGGGTACCTATAGACGGGGGTGTTTAGATGGGGCTAAAACTTTTTAACCCATGTCACATCAGATGTTTGGACGCTAATTTAGAGTATTAAACATGGACTAATAAAAAAACTAATTTCATAAATGAGAGCTAATCCGCGAGACGAATTTTTTAAGCCTAATTAATCCATAATTATCAAAAGTTTACTGTAGCATTACATTGTCAAAATCATGGCGTAATTAGACTCAAAAGATTTGTCTCGCGAATTAGTCCAAGCTTATGAAATGGGTTATGTAATTAGTGTATGTTTAATACTCCAAATTAGTGTCCAAACATCCGATGTGACAGGGACTTAGAATAAGTCTCTGGAAACCAAACAGCCCCTATATAGTCTGTAATCTGGAATGATTTTAAGTACGACTGGTATGTCTTAAAAAAAAAAAAAAA | |||||||||
gi|88725638|gb|CI748897.1|CI748897 CI748897 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): GGGTAAAGTTTTGACCTGTCACATTGAATATTATATAGGGTATCGTATAGGATGTTCGAGCACTAATAAAAAAAACCTAATTATAGAATTTGTTAGTAAACCACGAGACGAATTTATTAAGTCTAATTAATCCGTCATTAGCAAATGTTTACTGTAGCACCACATTGTCAAATCATGGAGCAATTAGGCTTAAAAGATTTGTCTCGCAAATTAGTCGCAATCTGTACAATTAATTATTTTTTAGCCTATATTGAATACTTCATGCAGGTTTTTAAACGTTCGATATGATAGGGTGAAAAATTTTAGGGTGAGATCTAAACAGGATCTTTGCCTCAAAATTTTCACAGTAGCGAGCAGCCGAG | |||||||||
gi|88958307|gb|CI095826.1|CI095826 CI095826 Oryza sativa (japonica cultivar-group) Panicles more than 5cm stage Oryza sativa Jap CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTAAACTGCAAAACGAATTTATTAAGCATAATTAATCCATCATTAGCAAATGTTTACTGTAACACCATATTGTCAAATCATGTAGCAATTAAGCTTAAAAGATTTGTCTTGCAATTTACACGCATGTATCCAAACATTCGATGTAACATGGGGTCCAAAGCTAAGAAAAATGTACTAGTGCTAAAGATATTGGGGGTCTGTGCGTTTTACCTCTTAATTCGTGGTACGATAATATGGATTGAATTAGAGGGAGCAGCCACCTCTGCTGCTCTAAGGGAACGGCATTTATTAAACCACTATTTTTATTCATGCCAAACACCAGCACTAGTCCAGTGACAACCAAACGACAATCCTACACTCCAAAAGTTTACATTTAGGTTCTCAAATAGTGATACATAGCTTTGAGAGTTGAAACCGTCAGATACTGACATAGTTTATGAGGTGCCCCTGGAGTTGGCAAAAACTTCACGAAGATTGTCGCAGCTCTGGACGCACAAAGTCTGCATCAGCAGG | |||||||||
gi|88513568|gb|CI441074.1|CI441074 CI441074 Oryza sativa (japonica cultivar-group) 4th leaf leaf 1mM ACC(1-aminocyclopropane-1-c CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): CTGCCAGAAAACTTCGAGACGAATTTATCAAGCCTAATTAATCCGTCATCAACAAATGTTTATTGTAGCACCACATTATCAAATCCTGGCGCAATTAAGCTTAAAAGATTCATCTCGCAATTTCCTGTCGAACTATGTAATTGGTTTTTTTTTCTAAATTTAACACTATGCATGTGTCCAAACATNCGATGTGACAGCGTGAAAAATTTGGTTTGAAAACTAAACAGGCCCATATTTACATGTCGACTGGTACTGGTACGACGCCAAAAACTTGTGTGTTTTTTCTCCAAGTGGTCAGCAACATTGCCATGTACTATNGACTTGGTATAATCTTCAAAAGCTCAATGTCAAACAGGAGAGTTTNATCTATCAACCCTTGATTCCTCAGAACAAAATNNAGAGCCC | |||||||||
gi|117212193|gb|CT851309.1|CT851309 CT851309 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): GAGGCCGGAGGAGCTTCGTCGGGACCGGTCAAGCTCGAAGCCCGTCGTGCTCGTGGTCAGCCAGGCGATTGGAGGCGAATTAGATGGCGATGGCTTGAGGGGAGGAGAAGAGATGGAGAGCTTACGCAAATGGAAGAGAAAGGATGTGCCAAATTTAATATTGGAGCTGTGGGTGCTTCCTATTTTTAATAGAAGGACAGCAGCAACAAATTTCACAGGAGCAGCAAAAAGGGTTGCAGATTCAGATCAGGTGCTTTGTGTTTTTAGGCCATTTACAATGCAAGGACGAGGCGTGTGGCAATGTAGAGCCTGTGTTGCAACTAATTTGCGAGACGAATTTTTAAGCCTAATTGCTCTATGATTTGATAATTTGCTATGACAGATTAATTAAGCTTAATAAATTCATCTCGCGGTTTATTGATAGATTCTATAATGTAATTAGTTTTTTTTAATTAGTGTCCGAACATCTCATGCGATGTGACACGCTTGCTGGGCTGACTCTACATGTAATGCCTGGGCTGAATAAGCCGTAGTAGTCTCTTGGGCATTTTTTTTGGGACTGTCTTTCCAACGACTATTGGGGACTGTCTTTTCTAACTTTAACAGAAAATACAATAAAAAAATCTGCCCATTTATAAGTTCCGGAAAAAAAAAAAAAAAAAAAAGGGCCGGCTTTGGCCTTCCAGGGGGGGGGCCCCCGGGTACCCCAATTTCCCCCCCTATAGGGGGGGGTCGGAAATTCCCCCGCGGCCTCCCCTGGGCGCCGCCGTTTTTTAAAAACCGTCCCGGGGGCCGGGGGAAAAAAAACCCTGGGGGGGTTTTCCCCCCAAATTTTTAAATCCCCCCTTTTTGGAGAACCCAATATCCCCCCCCCTTTTTTTTCCCCCCCCCGTGGGGGGGGGGAAAAAAAAAAAAACAAGAAAAAAAGGAGGCCGCCGCCCCCCCCCCCCAAATTTCCCCCCCCCCCTTTTCTCCCCCCCAAAAAAAAATTTTTTTGTGGCCCCCCACCCCCCCCCCCTGGAAAAAGTGGGGGGGGGGAAAAAAAAGAGGGGGGGAGAAACCCCCCGCCCCCCCCCCCCCCGTGTTGTTAGAAGGGCGGCGGGCGCCCCCCCCATCTATTTTATTTAAAAAAACGGCGGCGGGGCGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGTGGTGGGGGGGGGGGGGGGGGGTGGGTGGGGTTTTTTATTTTTCTTCTACACCCGCCCGCCCCCCCCAGCAGAGGAGGGGAGAGCGGGG | |||||||||
gi|86493299|gb|CI135932.1|CI135932 CI135932 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) Oryza sativ CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): TCAAAAGATAAACATATGGTAGCACAATCTTGAATTATCGGTAAGATGAAAAAAAGAAGAGAACTTCTAAAGTCAATCTTGAATGGCAGCACAATCCATTCGCCTCACTCGCACTTGCCATTCCACTCCAACTCTCCTCTACCTGCAGCGAGCTGCCATTCCCCTCCAACTCCCCTCTACCTGTAGCACATTTTTAGCAGCAGATTGGTCATATCATCAAAACATCAATCTATTCATGAACCTGCAAGGCAAATTGCTTTAGGCTGTGTTTAGATCCAGGGGTGAAAATTTTTGTCGTGACACATCGGATATACGGACACACATTTGAAGTACTAAACGTAGTCTAATAATAAAACAAATCATAGATTCCGCCTGTAAACTGCGAGACAAAATTATTAAGCCTAATTAATCCATCATTAGCAAATGTTTACTGTAGCACCACATTGTCAAATCATGGAGCAATTAGGCTTAAAAGATTCATCTCGCAATTTAGACATAAT | |||||||||
gi|117242734|gb|CT843541.1|CT843541 CT843541 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): GGTTCCGCGATCTTCTTAGAAGGCTCTGCCCAGACGATCTTGCCGGTTATCCGCATTTTATCCTCCACTGCCGATGATCCGTTTCCATTCCCCGCCAGTAGGTGAGGCTTTAATGCCATGAAGGTGGTGGGAGAGACCAGAGACTATATTTTGGACTTTTTTTTTGTTTAGGCCTTGTTTAGTTCCTAAATTTTTTTTCTCAAAAACATCACATCAAATATTTGTACACATACATGGTGTATTAAATATAGATAAAAATAAAAAACTAATTGCACAGTTTGCATGGAAATCACGAGATGAATCTTTTAAGACTAATTAGTCCATGATTAGCCATAAGTGCTATAGTATCCACATGTGCTAATGACGGATTAATTGGGCTTAATAAATTTGTCTCGCGGTTTCCAGGCGAGTTATGAAATTAGTTTTTTCATTTGTGTCAGAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTAC | |||||||||
gi|117225368|gb|CT853122.1|CT853122 CT853122 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): GAATCTAATGAGCCTAATTAATCCATAATTAACCTATGTGATGTTACAGTAAACATTCTCTAATTATAGATTAATTAGGCTTAAAAAATTTATCTCGTGAATTAGCTTTTATTTATGTAATTGTTTTGTAAGTAGTCTATATTTAATACTCTAAATTAGTGTCTAAAGACAGGGACTAAAGTTAAGTCCCTGGATCTAAACACCACCTAAAAAAGGGATCAGATTCAGTTGGTGCTCAGGAAGAAGCAACGCCGTTAAAATTCTGTACATTATGGTTTTCTGATTTGGCCTCTGGTGAACACAGATTTTCCACTGCCTCTTACCACAAGTCCACGACTCTTCAACGGGTCGTGTGACTTGTGACAAACGTCTGTCACAAAGTTCAGAGCTGTGTTGCAAACTTGCAATGTGTTTCTTGTTCTTCTGAATTCTGATTGGTCCCTTCTGTTGTAATCAGCCAGTTTGGTTGATTTGTCTTCTGAATTATGACGGGCCAATTCTACTTACTGGTGTAGCAGTAGCACTTAGCAGTGTGGGTTGGGCCAGCAACATTCCAACTTCAGATCATATACCTGAGCTACTTGTAAAATGGGCCAATTTATCAGCAGTGCTAGCTAGTATAGTACTGAATATATTAGACTTTATCTTTTGTTTCCTTGCGAATTGCTGTCACGGAATGGGCAGTGGAAAGTGCATCAAACTTTGCTGGAATGCCTTGGAGTCTGCAAGTAACTTTGAAGCTTTCTGAAGGCTCGATGGCTACACAACATTTTCTTTCTGGGACGTCAGCATTTTGCTGAACTTCTTGGACGCATCAAAATGCTGGAGATTTGGAATGCTTCACTCAAATTTTTCTGAGCTCCCTTGTAAGTTCCGCCGAACTTCGTCATGACTCTTGGTGAATGTATACTGTTTTGGAGGGTTGTCTTGGTCAAAATCAATGGGCTGTAATTTTCAGGGGGATTGAGGGAGGTGTTTTGGGGGAAATATTCACCGTCTTTTTCATTTATTTAAAAAAACTTTAGTTTAGTTGGGGCCTTGTTTTAAAAAACAATGAGGGTTTGACAAGGGCCCCGGGCTTTTTTTTTCCCCAAAGATTTTTTTTTGAA | |||||||||
gi|88246593|gb|CI246442.1|CI246442 CI246442 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTAGGCTTAAAAAATTTATCTCGCAAATTAGCTTTCATTTATGTAATTAGTTTTGTAAGTAGTCTATATTTAATAGACTAAATTAGTGTCTAAATACAGAGACTAAAGTTAAGTCCCTGGATCCAAACACCACCTAAAGCCCTAACAAGAGATCCATGATCTCAGATTAAACGTCATACAGACAATTCACCCATATTACAATGCATTGCCATATCTCAAAGCCACTAAAACTTATCCTCGAATCCTAGCCCATCGATCTCATTCGCTTTCCATAGCAGGATCTCAATCTCCAACAGAAGCTCTGGAAACTCACCATATAAGCATTCCTCTACCTCCAATTGACTATAAGCAAAGATCCACAGATGTACGTAAAAATGAGAGCGGACATTCCAGTTAAAGCTCATGTCATCATCCCCGGTACTCACGTATTCCCTATGGCTATTCAACCATCTTCTGAGAAAGCGGTTGGAAATAACTATGCCTAGCCAAATCCCATCATACGGCAACTTGCTAATAATCTGATTCTTCAGTCTTGGTT | |||||||||
gi|29675054|gb|CB671329.1|CB671329 OSJNEe04N19.f OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe04N19 5', mRNA sequence CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): ATTACATAAATGAAAGCTAATTTGCAAGACAAATTTTTTAAGCCTAATTAATCCATAATTAGATAATGTTTACTGTAGCATCACATAGTCTAATCATAGATTAATTAGGCTCAATAGATTCATCTCGCGAATTAGTCCAAGATTATGGATGAGTTTTATTAATAGTCTACGTTTAATATTTATAATTAATTTTCAAACATCCGATGTGATAGAGACTTAAAGTTTTAGTCCTATTGGCCTTACTATTCAGCCTGAACCACTTGTTGTTGCATTCGGATCGATCGACATTTGATGATGCCACTCGGCGACCTGATCGATCTGCTCATACATGCATGTGTAATTAGTAACCATTTCATGTGTATACACACACACACACACATATGCAGATATGCTCTTGCATCCCCATCTGAAAATTGGAACCTTGCTTGCAATTGTGTATGAATGTTTTGGAGAGAGGGTACAGTACAGTTACACCATGCATCTTAATTTGGGTATTGTTGCATTGACATTCTTTCTTTCCCTTTGTTTTGCCTTCCCATTTCTGGCTTTTTGATCATGGGCTACAGTCGCAGTTTGCACAATCTGCCGCATATATTTGGATATATTGGTACAAAGACAATCAAGCATGCATGTACTACTAGTGAAATTAAGCCAATGTTTTTTCTGTCCACAAATAAATTCCATGTTGACATGCATGCACATTAGTATGGTTTTTAATTAGTAAATAGATATATAATTTTCAACAATTTTTTTGTTGCTATATATGTTAGCAAAGGATATTTGATGGTACCATATATATGTTTAT | |||||||||
gi|66918271|gb|CX105119.1|CX105119 BI108I15 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl CGCGAGATAAATCTATTGAGC EST sequence (targeted fragment marked with yellow): GTCGGAATTCCGGGTCGACCACGCGTCGACGCGAACAAACAGCAGGAATCCGATCTGGACTGCGAGAAGCAGGCGAGGATCACCGAATTTTCTGCGGCGCAGAATGACCAGGAGGAGCCGAGGAGGATGAAGAAGTACGGCCCTGTTTAGATGGGACTAAAACTTTTAAGTCCCTATCACATCGGATGCTTGAAAATTAATTATAAATATTAAACGTAGACTATTAATAAAACCCATCCATAATCTTGGACTAATTTGCGAGACGAATCTAATGAGCCTAATTAATCCATAATTAACCTATGTGATGTTACAGTAAACATTCTCTAATTATAGATTAATTAGGCTTAAAAAATTTATCTCGTGAATTAGCTTTTATTTATGTAATAGTTTTGTAAGTAGTCTATATTTAATACTCTAAATTAGTGTCTAAAGACAGGGACTAAAGTTAAGTCCCTGGATCTAAACAGCAACTAAACAAGGGATCAGATTCAGTTGGTGCTCAGGAAGAAGCAACGCCGTTCAAATTCTGTAAAA | |||||||||