| mature miRNA: CGGAACCCTAATGGCGATGAC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88729448|gb|CI752958.1|CI752958 CI752958 Oryza sativa (japonica cultivar-group) 5 days after pollination pistil Oryza sativa CGGAACCCTAATGGCGATGAC EST sequence (targeted fragment marked with yellow): AGGCCTCCACATCTCCTTTGCCGCCGCTGCCGCCGCCTCGCCATCCCGAGCGAGCATGCGGCCGCCCTCCTCCACCTCCTCCCCTCGCCGCCTTCCCGTTTGCTAGGGCTCCGGCCGCCTTGCCGTTCCTTCCCCTCCTCGTCATCANTAGGGTTTCGACCTCGCGCCGNGGGGGAGTTTGTAGCCCGACTGACCCGAAGCTGTTGCCGCCGCCCGCCCTCCCGGCCGCGCCATGGTGAGGCTCACCGCCGACCTGATATGGAAGAGCCCGCACTTCTTCAACGCCGTCAAGGACCGCGAGCTCGACATCCGAGGTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGGACCAATTTGACACAATTGACTTG | |||||||||
gi|88333350|gb|CI642387.1|CI642387 CI642387 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CGGAACCCTAATGGCGATGAC EST sequence (targeted fragment marked with yellow): TCCCCCCTCCATTCCGCTCCGATTTACCGCCTCGCCGGCCGCCGCAGTAGGCGGCGCTACGGTTATTTCGGTTAGGGTTCCGGCGAGGCCAACGCCCACCCCCCANCTCCACCTCCACCTCCCCCAGAGCGAGCCGCCGCCGCCTGTGGAGGGCCAGGGAGAGATGGTTTTCGTGTGGCTCACCGCGTTCTTCCTCGTCGTGGCGCTCATCGTGCTCGTCATCTACCAGCTGATGTGCTTGGCAGATCTGGAGTTTGACTATATCAATCCATTCGATTCATCCTCCCGGATAAATAAAGTGGTTATTCCAGAATTCGTATTGCAA | |||||||||
gi|89169588|gb|CI109947.1|CI109947 CI109947 Oryza sativa (japonica cultivar-group) Panicles less than 5cm stage Oryza sativa Jap CGGAACCCTAATGGCGATGAC EST sequence (targeted fragment marked with yellow): TTTCAAAGCAAAAAGGTTTTGAATTTGAACGCCGATGTGGTTACAAACTGAATAAGCCCGCCCCAATTGGGGCTTCCGTTTGACGCAGTTAAGAATTGGATCGCTGCGAGACACCACGACGGCGATAGAAAGGACCTTGACATTAGGGTTCCGCCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAGGAGAGCGAC | |||||||||
gi|38469609|gb|CF953740.1|CF953740 4581rsiceb_9961.y1 Oryza sativa cv. PA64s leaf cDNA library Oryza sativa Indica Group cDNA 5' CGGAACCCTAATGGCGATGAC EST sequence (targeted fragment marked with yellow): GCACGAGGCCCTTCTCCGCTTCGCCGGCTCACGCCTTCCCTCTCTCGCGAGGCGGCCGGCGAGATCTGCCTGCGCCGCGCTCCCGCTCGCGCCGTGGTCAGGTGAGCCCCATCTCCCGGCCCGATCTCGTGCGGGTTTCCTGCCAATTCGGGGGGGCAGGGCGAGGTGACCTTGTCGTGTGGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGGTTTCGTCGCGTGATGGCGTCGTCGGGGAAGATGGAGGGGCCGTCGGCGCCGGCGATGCGGCGGGACCCGTACGAGGTGCTCTCCGTGCCAAGGGACTCCTCCGACCAGGAGATCAAGTCCGCCTACCGCAAGCTCGCGCTCAAGTTCGTGCTCCCCCTAACCTGTCCGCCCTGCTCTTGCTGCTGCTTTCGATCGCGCTATTCAGATTGCAGAATGTGAACGTGCTGCTAGTTTAGTTGAATGCGTTCTCTGCGGCTTCATTGCTCATGGTCACAATTGTTTGGATCAGCTGCAGCAATTTACCACATCAGCTGTGGTGTTCCTCAGAATCACTTGAACTTTTCTCATCCA | |||||||||
gi|88721580|gb|CI744879.1|CI744879 CI744879 Oryza sativa (japonica cultivar-group) after pollination embryo Oryza sativa Japonic CGGAACCCTAATGGCGATGAC EST sequence (targeted fragment marked with yellow): TTTCCCCTCCCCCCTCCATTCCGCTCCGATTTACCGCCTCGCCGGCCGCCGCGGTAGGCGGCGCTACGGTTATTTCGGTTAGGGTTCCGGCGAGGCCAACGCCCACCCCCCACCTCCACCTCCACCTCCCCCAGAGCGAGCCGCCGCCGCCTGTGGAGGGCCAGGGAGAGATGGTTTTCGTGTGGCTCACCGCGTTCTTCCTCGTCGTGGCGCTCATCGTGCTCGTCATCTACCAGCTGATGTGCTTGGCAGATCTGGAGTTTGACTATATCAATCCATTCGATTCATCCTCCCGGATAAATAAAGTGGTTATTCCAGAATTCGTATTGCAAGCAGCTCTAAGTGTATTATTCC | |||||||||
gi|58597044|gb|CK007572.1|CK007572 27765rsicef_3829.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica G CGGAACCCTAATGGCGATGAC EST sequence (targeted fragment marked with yellow): TGGCACGAGGCCCCGAGAAAACCCTAAACCCCCCAACCCTCGCCGCCGGCAACCGCCGCCGCCATGTTCGGCACCCCGGCTTCGTCGCCCCTATTTGGGACCCCCTCCACCACCCCGGCATTCGGCGCCCCTTCCTCCACCCCTGCATTCGGCACGCCCTCCACCAACCCCGCCTTCGGCACCCCTTCCTCCACGCCGGCGTTCGGCGCGCCGTCGTCCACCCCGTCCTTCGGCACCCCCTCCACCGCGCCCGCGTTCGGGACCCCGTCCTCGACCCCGGCGTTCGGCGCGCCCTCCTCGACCCCTGCCTTCGGGGCGCCCTTCTCGACCCCGGCGTTCGGCGTGGCGCCGTCGCCGTCGCCATCGCCGTTTGGGTTCCAGCAGCAGATGACGCCGTCCCCGTCGCCGTTCGGGTTCGCCGGTGGGGGCGGCGGGCAGATCACCACCCAGATGGCCCCCGTCGCGCCGCTCCCGCTCTCGCCCTCCGACCGTGACATCCAGGCTATCGTGG | |||||||||
gi|117227432|gb|CT846587.1|CT846587 CT846587 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD CGGAACCCTAATGGCGATGAC EST sequence (targeted fragment marked with yellow): GGGCCGCGTCCATCGCACTGGTCCACTCGCCTCTCACCTCCCCCCTCCATTCCGCTCCGATTTACCGCCTCGCCGGCCGCCGCAGTAGGCGGCGCTACGGTTATTTCGGTTAGGGTTCCGGCGAGGCCAACGCCCACCCCCCACCTCCACCTCCACCTCCCCCAGAGCGAGCCGCCGCCGCCTGTGGAGGGCCAGGGAGAGATGGTTTTCGTGTGGCTCACCGCGTTCTTCCTCGTCGTCGCGCTCATCGTGCTCGTCATCTACCAGCTGATGTGCTTGGCAGATCTGGAGTTTGACTATATCAATCCATTCGATTCATCCTCCCGGATAAATAAAGTGGTTATTCCAGAATTCGTATTGCAAGCAGCTCTAAGTGTATTATTCCTCCTATCGGGGCATTGGGCAATGTTCTTACTTTCTGCCCCGATGGTGTACTATAACTATACGCTGTACCAGCGACGACAACATCTTGTAGATGTAACAGAAATATTTAATCATCTTGGCCGGGAGAAGAAACGCCGCCTTTTTAAGATAGTTGGTCTCATTATTCTCCTATTCTTGTCCTTGTTTTGGATGATCTGGACTGTATTATTGGAGGAGGATGAGTAGAATGAAAAAAAAAACCACTATGGTAGCTCATATTGGCGTTCCAAGTTCCAACCATTAGTTAGGTCATCTGGAGAAGCAAGACAAGTGAAAAACATTGTGCCCCAAAAATATTGTTGGCTTGTGGAGCTGTTTTTTCTCCGATTTATAGTGAAGCTCCTATTATTGTCGCATGTAACATGTAAATTAGGAGCTACCGGGCATCAGTTCTCGTGGGGGCAAAGGGATAACTTCGTCGTTGTGCGTGCGTTGTCTTGCCTTGCACTGCAAAACGGCCTTGATTTTATGTTGATTTTGTGTGGTTTGATTTTTGGTTACAAGAATCATTTCCTCTAAACTTGATGGTCTAATCTTTTGGTGGCGGCCTGAAATGCAAACACGAAGGGGAATGCCCGGGGGCTATTACCCCCAAAACTTGACCTTTTTGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAAAAAAAAAAAAA | |||||||||