| mature miRNA: CTCTCTCGTTTTCCACGCGCACG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88956122|gb|CI092410.1|CI092410 CI092410 Oryza sativa (japonica cultivar-group) Panicles more than 5cm stage Oryza sativa Jap CTCTCTCGTTTTCCACGCGCACG EST sequence (targeted fragment marked with yellow): TTTTTTACACAAAACGAGGTAAGCCATTAGCGCATGATTAATTGAGTATTAACTATTTTAAATTTCAAAAATGGACTAATATGAATTTTTAAAGCAACTTTCATATAGAAATTTTTTACAAAAAATACACCGTTTAATAGTTTGGGAAGCGTGCGTGCGGAAAACGAGTGACAATCTCCCCAATCTCCTTTGAAAGAAGGCAGCCTAAATCTGATGCGCTGCACACTCGTGGAGGGCTCGATGCTGAGCCAGTCCCTCGTCCTCTCGCAAGTGGGGGAGGATACTTTTGGGGGCGGCGGAATGGTCGAGACAGGTGAAATCGTCGCCGACGGCTGGCCCGGTGCCGGGGTTGGAGGAGACAATCGTCATTTTCGTCGCAGCTGCCGTCAGCATCATTGCCGTCGTCGCAGCCACCGTCGCCGTCGTCGTTGTCGTAGCTGCCGCAGCCGTGGCCGCTCGCTCCCGCCCGCCTAAGCCCGCCGCCGCCGCTCCCGAGGGCGGAGG | |||||||||
gi|88205370|gb|CI204756.1|CI204756 CI204756 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft CTCTCTCGTTTTCCACGCGCACG EST sequence (targeted fragment marked with yellow): TTTAAGCAACTTTCCTATAGAAAATTTATACGAAAAACGCACCGTATAGTAGTTTGAAAAGCGTGCGCGCGGAAAACGAGGGACAATCCCCCCTATCTTCCCTGAAAGAACGCAGCTAATTACACACAGATGATGCTATGCTTTGTGATGAGCTATGCTCTGGCCTTCGTTCTCACCTCCTGCGGCAGTTGGCCTTCCGGTCGGCGGCGGGGGCTTTCCTCTTCCCGCCGGCGCTGGCCCCGCCCCCGCAGGTGACCTCGCTCTGCACCTCCGACCCTTCTCCTCCGGCGGCGGAGACCGCCGCCTTGTCGAGCGCCCGCATCGCCCGGGAGAAGGTGTGGAGAATCTGGTCGACGAAGCGGCCGGCCTCCGGCGAGTCGCGGAGGAGCCCCTGCAGCTGCGCCGCCAGCTCCTTCCCCTTCTCCATGTCCTCCATCACCTGCGCGTACGCCGGCGCCGGCGCCGGCGACATCGATGACGTCATCCTCAATCCAAGCAAGCAAGCGCGCACCCAGTGACTGACACTACACTGCCGCTGCCGCGCACTCTC | |||||||||
gi|88520720|gb|CI446376.1|CI446376 CI446376 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza CTCTCTCGTTTTCCACGCGCACG EST sequence (targeted fragment marked with yellow): GTAGGCAAGAAAAGATAATTCCTTTTCCGTTATCAACTTTAATATTCGCAATAATCATAACATTATTGTACTACCTGTCAACGACAACTTTTTACTCCACTCTGTAGCAACTCCATGCACTCCGTAGAAGGAGTCACACACTCTCTCAGGCTGTGTTTGATACTTGGGGTTGGGAACCCAACTCCACCGCACAGAAAACGGAGCGGTCCATTAGCGTGTGATTAATTAAGTATTAGTTAATTTTTTTTTTAGAAATAGATTAATTTGTTTTTTTAAAGCCACTTTCGTATAGAAACTTTTTGCAAAAAAATACACCATTTAGCAGTTTGAAAAGCGTGCACGCGGAAAACGAGGGAAAGGGGTTGGGAAACTTGTGGAAAGAACGCAGCCTCACACACACACTAAACAGGAATATTACAGTTTTCT | |||||||||
gi|218496224|gb|FG950091.1|FG950091 MA_93-11_06986 Mature embryo cDNA Library of 93-11 Oryza sativa Indica Group cDNA 5', mRNA s CTCTCTCGTTTTCCACGCGCACG EST sequence (targeted fragment marked with yellow): TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGCCCAGATGGAATGGCTGAGAATGACTGGATCTGCCCAAAGTGTGAGAATGTCAACTTTTCCTTCAGAAACAGTTGCAATATGAAGAAATGTGGAGCTCCAAGGCCAAGCCCTGTAAGCAGACTATTCCCTTTCCATCTTTCCAAAATTTGTCTGTCTGCTCAACTGCTCAAGATAAGAAGGCCCTAGTATTCATGTCACTTGTTGTTCCAAGTGACAATTATAAACTGAAATCTGTTCAGGTGATTATACAATTGCGTTCAATCAATGTAGAAAACTCCCATCATTGTTGGCTGTGTTCTTTTGGAGGGGTTGGGAACCCCTCCCCTCCGCACGAAAAACGGAGCGATAGATTAATATGTGATTAATTAAGTATTAGCTATAAAAAACTTGAAAATGGATTAATATGATTTTTTAAAGTAACTTTCCTATATAATTTTTTTGCAAAGCGTGTACCGTATAGTAGTTTGAAAAGCGTGCACGCGGAAAACGAGGGAGACGGGTTGGGAATCCATGGGAAAGAATACATATTTTTTATACACAAATCTGCTTAACTCTTGTCTCATGTGATATCG | |||||||||
gi|88225452|gb|CI225368.1|CI225368 CI225368 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) and mixed s CTCTCTCGTTTTCCACGCGCACG EST sequence (targeted fragment marked with yellow): GCTTTCATCAAGCAGATGTCCTGNCACAGAAAGTCTAGGCCCCTTCTGCAGCTCCAAACATACCCTATATTTTTCATTTGGTCTATCTCTTTGATGGCACCTTTTTCTTAAGGCTTCTAAGTCTCTAAGGCTGTGTTCGTTTCAGAAGGATGGGAACTGATCCCTCCCGCACGGGAAACGGAGCGATTAATTAGCACGTGATTATTTAAGTATTAGCTTTTTTTTTTCAAAAATGGATCAATATGTTTTTTTTAAGCAACTTTCGCATAGAAACTTTTTGCAAAAAATGCACTGTTTAGCAATTTGAAAAGCGTGCGCGCGGAAAACGAGGGGGGAGTTGGGAACCCCTGAAACGAACGCAGCCTAAGGGGATGTTTGGTTGATGCCTAACATTGCCATAACTAAGTTTAGGCTAGTTGTGGCATGGTGGCATAAATGTGGCTTAGAAATAGTTAGCCACAAGTGTGGCATGCTTAGCTCTAAATTTCAGAGCATGACATGTGGGTCCCAAAGTTAAGAAAGTGTGGCATAACACAATTGCGGCAGCAAACCAAACACATGCCTAAAAAACTATGGCATGGCTAAAGTGTG | |||||||||
gi|58652467|gb|CK041147.1|CK041147 44108rsiceh_12540.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G CTCTCTCGTTTTCCACGCGCACG EST sequence (targeted fragment marked with yellow): GCTTAAGGAGGGCAGGTTCATTGGGCATCAGGTACACATATTTGGTTTTCACTTTTCCATCTTATTAGCGGGTGTTGCGTGTACTCTTTCTGAACACATATCAACTCGCAGTTCTCTACCAAGTAAGGGTGTGTTCGGATGAGCAGGTCAGGATCTGCTCATCCCAGCACGCAAAACGAAATGGCTCATTAGCGTATGATTAATTAATATGATTTTGGGAGCCACTTTCCTATAGAAAATTTTTGCAAAAAAAAAACACACTGTTTAGTGGTTCAGAAGTGCGCGCGTGGAAAATGAGGGAATATAAGCTGGGAAATGGTAGTGCCGAATGAAGCCTAAAAAGTATAATTATCCCATTTTCAGCTCATCCTTTAGACTTGTATTCCAAATGGAATTTTGGGATACTTTCCTTTGTTTTCTTTTCAGAAATCTGTCTAATTATCCCATTTTCACTTCATCCTTTAGACTTGTATTCCAAATGGAATCTTGGGATACTTTCCTTTGTTTTCTTTTCAGAAATCTGTCTAATTATCCATTTTCAGCTCATCCTCT | |||||||||
gi|88473613|gb|CI410884.1|CI410884 CI410884 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza CTCTCTCGTTTTCCACGCGCACG EST sequence (targeted fragment marked with yellow): GTAGGCAAGAAAAGATAATTCCTTTTCCGTTATCAACTTTAATATTCGCAATAATCATAACATTATTGTACTACCTGTCAACGACAACTTTTTACTCCACTCTGTAGCAACTCCATGCACTCCGTAGAAGGAGTCACACACTCTCTCAGGCTGTGTTTGATACTTGGGGTTGGGAACCCAACTCCACCGCACAGAAAACGGAGCGGTCCATTAGCGTGTGATTAATTAAGTATTAGTTAATTTTTTTTTTAGAAATAGATTAATTTGTTTTTTTAAAGCAACTTTCGTATAGAAACTTTTTGCAAAAAAATACACCATTTACCAGTTTGAAAAGCGTGCACGCGGAAAACGAGGGAAAGGGGTTGGGAAACTTGTGGAAAGAACGCAGCCTCACACACACACTAAACAGGAATATTACAGTTTTCTGTTTTAA | |||||||||
gi|58610840|gb|CK038552.1|CK038552 39060rsiceg_5695.y1 Oryza sativa cv. 93-11 tillering whole plant cDNA library Oryza sativa cD CTCTCTCGTTTTCCACGCGCACG EST sequence (targeted fragment marked with yellow): TGTATAGAAAGTTTGCAAAAAACGAACCGTTTAGCACTTTGAAAAGCGTGCGCGCGGAAAACGAGGGAGTGGGGTTGGGAACCCTCAAAACGAACTCAGCCTTAGTTGATGACCATGCTTAATTGATATCTTAACGGACCATTTTTTTTAACTAGAAGCAGCACTGATTCTGAAGGATCAGAGCAATTAGTTATTGTGTATTTGTATCTACAATACTCTTTTTTTTTGTGTAAAAGCATCAACAACGCTCAAGTATCAATCAACTTTATTTACTGAAGTAGTAGCTTGTGTGATATTTTGCCTGTCGATAGAACCAATCTTTCTTGTCAATTTGAGTGTATGTCCTGTCAACTATTCAATGTTCTTTTGGTATTGATTTGCATCTCAATTTTTTTTATGTAACTTCAAATTTGTAGGAGGACATTGTGGCTTGTTTCAACATAAATATGGCACAAGTGCTGTGCTCAAGGGGAGATGGGAA | |||||||||
gi|88483172|gb|CI420443.1|CI420443 CI420443 Oryza sativa (japonica cultivar-group) leaf of seedling gamma-irradiated (9.5min), a CTCTCTCGTTTTCCACGCGCACG EST sequence (targeted fragment marked with yellow): GGCATAAACTTTTAGCCTTTTTATTATTGACAAAATTGGTTATATAGCATCGAACCAATTTTGCCTATAACTTACTGTAGCACGCAGACGCAGGAGCTCACATCCTAGGGAAGGATGGGAACATGCACAGTGCGCACGGAAAACGGAGTAATCTATTAGCGTGTGATTAATTAAGTATTTTAGCTATTTTTTTCCAAAAATAGATCAATATGATTTTTTTAAAAAACAACTTTCGTATAGAAACTTTTTTTTAAAAAAACATATTGTTTAGCAGTTTAAAAAGCGTGCGCGTGGAAAACGAGAGGGGAGTGTTGGGAACTTGCTCTTGCAAACACAGTGTTTGATGGATCCAATCTTCAAACTGGTAAGACAATTCCTCGATCTCCAGTTATATTCCTAGTTTATCAACTTCCTTTTCATGGTTTGTC | |||||||||
gi|88730268|gb|CI753882.1|CI753882 CI753882 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CTCTCTCGTTTTCCACGCGCACG EST sequence (targeted fragment marked with yellow): TTTGAGGAGGAGGAGATAGAGAAGATTGGGAAGATACGCAAAACGAGGTGAGCCATTAGCGCATGATTAATTGAGTCTTAACTATTTTAAATTTTAGAAATGGATTAATATGATTTTTTAAAGCAACTTTCCTATAGAAAAATTTTACAAAAAACACACCATTTAGTAGTTTGAAAAGCGTGCGTGCGGAAAACGAGACAATCACCCCTATCTCCCCTGATAGAACGCAAACGGAGGAAATACATAAGAATCCATTCCATTGTAGATGAAGGACATCACCAGATCCATTGAGGATGAAGGACATCACATGTTAGCACCTAATAAACTCTTCATGGCAACACTTACTACAACCACAGCTTATGAGGCCTGGCCACTCCATAAGCTTCTTCA | |||||||||
gi|88726360|gb|CI750015.1|CI750015 CI750015 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CTCTCTCGTTTTCCACGCGCACG EST sequence (targeted fragment marked with yellow): AAGGCAAGATATTTGTTAACGAGGTTTAGCCGAAGCCTATATCTCAAGACACTAATTATTGGTGTTCCTCCCCAATCTAATATAATTATAGGTTGTGTTTGATACATGAGATTGGTAACCCATCTCCTCCGCACGGAAAATAGAGCGGTCCATTAGCGCGTGATTAATTAAGTATTAGCTATTTTAAAAAAAAATATTAATTTGATTTTCTAAGCAACTTTCGTATAGATATTTTTTGCAAAAAAAAACACACCATTTAGCAGTTTGAAAAGTGCGTGCGTGGAAAACGAGGGACAGGGGTTGGGAACACCCTTAAACGAACGCAGCCATAGTGTATTAGTGTATTCACGATCATTGACCAGCTAAGTCGTCAGCCANGTAACCCTCTCCTATGCTATTGTTG | |||||||||
gi|86822641|gb|CI358114.1|CI358114 CI358114 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone CTCTCTCGTTTTCCACGCGCACG EST sequence (targeted fragment marked with yellow): CGTTTGCTATGGCATAAACTTTTAGCCTTTTTATTATTGACAAAATTGGTTATATAGCATCGAACCAATTTTGCCTATAACTTAGTGTAGCACGCAGACGCAGGAGCTCACATCCTAGGGAAGGATGGGAACATGCACAGTGCGCACGGAAAACGGAGTAATCTATTAGCGTGTGATTAATTAAGTATTTCAGCTATTTTTTTCCAAAAATAGATCAATATGATTTTTTTAAAAAACAACTTTCGTATACAAACTTTTTTTTAAAAAAACATATTGTTTAGCAGTTTAAAAAGCGTGGGCGTGGAAAACGAGAGGGGAGTGTTGGGAACTTGTTCTTGCAAACACAGTGTTTGATGGATCCAATCTTCAAAGTGGTAAG | |||||||||
gi|86432987|gb|CI093330.1|CI093330 CI093330 Oryza sativa (japonica cultivar-group) Panicles more than 5cm stage Oryza sativa Jap CTCTCTCGTTTTCCACGCGCACG EST sequence (targeted fragment marked with yellow): TTTTTTTAGAAATTTTTTACAAAAAATATACCGTTTAATAGTTTGGGAAGCGTGCGTGCGGAAAACGAGTGACAATCTCCCCAATCTCCTTTGAAAGAAGGCAGCCTAAATCTGATGCGCTGCACACTCGTGGAGGGCTCGATGCTGAGCCAGTCCCTCGTCCTCTCGCAAGTGGGGGAGGATACTTTTGGGGGCGGCGGAATGGTCGAGACAGGTGAAATCGTCGCCGACGGCTGGCCCGGTGCCGGGGTTGGAGGAGACAATCGTCATTTTCGTCGCAGCTGCCGTCAGCATCATTGCCGTCGTCGCAGCCACCGTCGCCGTCGTCGTTGTCGTAGCTGCCGCAGCCGTGGCCGCTCGCTCCCGCCCGCCTAAGCCCGCCGCCGCCGCTCCCGAGGGCGGAGGCGGCCAGATCCGCGCGCTGACGGCGCTCCCGCTCCCGCCAGGCCGTTCCCGAGGACAGAGAACACTGGATCCGCGAGGAGAAGGAGAAGGGGGA | |||||||||
gi|88568715|gb|CI499432.1|CI499432 CI499432 Oryza sativa (japonica cultivar-group) 2 nuclei stage pistil Oryza sativa Japonica G CTCTCTCGTTTTCCACGCGCACG EST sequence (targeted fragment marked with yellow): AGAGCAANTTTCATATAGAAATTTTTTACAAAAAATACACCGTTTAATAGTTTGGGAAGCGTGCGTGCGGAAAACGAGTGANAATCTCCCCCAATCCTCCCTTTCGAAAGAAGGCCAGCCCTACAATCTGCATTGCGCTGCCACAACTCGTGGCAGGGGGCTCGATGCTGAGCCC | |||||||||
gi|88488724|gb|CI425995.1|CI425995 CI425995 Oryza sativa (japonica cultivar-group) leaf of seedling 10mM H2O2 (10min), 24hr afte CTCTCTCGTTTTCCACGCGCACG EST sequence (targeted fragment marked with yellow): AAAGCAACTTTCATATAGAAATTTTTTACAAAAAATACACCCGTTTAATAGTTTGGGAAGCGTGCGTGCGGAAAACGAGTGACAATCTCCCCAATCTCCTTTGAAAGAAGGCAGCCTAAATCTGATGCGCTGCACACTCGTGGAGGGCTCGATGCTGAGCCAGTCCCTCGTCCTCTCGCAAGTGGGGGAGGATANTTTTGGGGGCGGCGGAATGGTCGACACAGGTGAAATCGTCGCCGACGGCTGGCCCGGTGCCGGGGTTGGAGGACACAATCGTCATTTTCGTCGCAGCTGCCGTCA | |||||||||