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mature miRNA: CTTGCTGGTTCTCGAACCAGTG
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|117243040|gb|CT850254.1|CT850254 CT850254 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD 

CTTGCTGGTTCTCGAACCAGTG
||||||.|||||| || ||| |
GAACGATCAAGAGATTTGTCCC

EST sequence (targeted fragment marked with yellow):
ATGAAATAGCCCTGTTTAGAGAACTAGCAAGAGTTATTTTGAGAGCTATTTTTTAGCACAAGTAAATAGTCCTCCAATAAAATAACTCTGAGTTGTTTGGATCCAATAGCTATTTTGAGAGCTATTTGGCTTTTAATGTAACTTCTCATGGAGAGAGATAAAGAGAAAAGACATTTTTTCAGTGGCCCCACCTAAAATAGCCCCAATTAGCATCTCTTGGGGGAAGAAAATTTGGCCTAATCATTTACTAGGATGCAACGTATACAGAGGCTTCACACACACATCGACATGGCGACATCTATCAATTTGATGTTTTCCCAAGTTCTAGTGCATTGCAAGTTCATCCATTACCTTTGACCAACAACAATGTCAGGTGAATATTTTCCATGGAAGAAGCATGACGGGTGCGGTGGCAACCGGAAACTCTGCTCCAGACCTTGCCCCCGGACCTTGCTACGTCTGAAGATGCTGGACCCTCGGTCCTAAGAGCGAGTTGGATTTGTCGCCAAGTCCCTGGCCGGAGGAAGAAGAAAGGGTACAAAAGAGATATTCGCTACTCTTAAGATTTGTGCGGACAGGTGTCGTGCGGGAAGCAGAGTCTTTCGGATAAGCGTAGGACTTAAGTCTTACCAAATTTTTCTCCCTCTTGGGGGGGGAAAGTTTTTTTGGTGGGGCTATTTTCAAAAAGCTCACCCCTTTTGGATCTTTTTTAAGCTATTTGGGGCTATTTTAAAAAAGGGGCTAAAAAAAAATCTCTTTAAATTCCAAAAAGGGGGCTTGGTCAAAAAATTTCAATGGCTTTATACCCTTTCGGAAAGGGAAAAAACGGGGGGGGGTTTTTGCCCGCCCCAAAACCTTTTTTTTCATTTTTAAAAAGGGTTGGGAAAAATTAACATAAAATTTTTTATTTAATGGGTACTGGGGGGGGGAAAAAAAATCCTCCAAAAGGGTGGAAAAAGGGCTCCAAACTTTTGGCCGCCGGGGGCCCCCCCCGGCCAAAACCCCCCCACGGGGGGGAAGGTGTCAAATATTGGTGGGGCCCAACAGGGGGCCCTCTTATAAAACTTTTTTTTTACCCACAAGGGGGGTGGAAGGTGGTGGGGGGGCATATTTTTTGGCGGGGCCCCCCCCTCCCCCCCCCCCCCCCCCCCACAAAAAGGTTTTTGTTGTGAGAAAGAAAGGGGGGGGGGCAAACAAAAATGGGGGGGGGCGGAGGGGCGGGCCCCCCACCCCGGCGTGTGAAAGAACAAAAAAAAGAGAGGAGGGGGCAGAGACAAATAATATTTATGTGTTTTGTGTGTTGGTGTTGA


gi|41881748|gb|BX927573.1|BX927573 BX927573 Oryza sativa library (Han B) Oryza sativa cDNA clone p509c09p3, mRNA sequence 

CTTGCTGGTTCTCGAACCAGTG
|||||| ||||.|||  |||||
GAACGAGCAAGGGCTACGTCAC

EST sequence (targeted fragment marked with yellow):
TGATGCAGGTACCTGAATGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTCTTTGACAAATCAAAATGTATCAATAAGAAATTAATCAACAAGAATTGTATCAAACTAAGGTCGTATATTACAGATCTGGACTTGTATCATCTCGAAGCTTTCGTTAGTTTCTACTTCTACATCACTATCTGTGCCAAATTTAGCCCCTAAATGCTAGTATCAAATAAAAATAAAAAGACACACTAAATGCATGGGCGATCCTATCGTTCTGAAATCTGAATGATCTTGTGCTCCCGAAGCATCCCTTGCTTTCTTCTATGGGAATCTTCAGCAGCAAGAGATGCTGCACCTTTACTCTACTTTACTGAACTGGACAAAAGTATATACTCTCAGGATAAGATGAGAGTGATCGATGCAATGGCGATGAGAGCTAACAATGAAACCGCCTTTCGCGCGCTTTTCGATTCGTCCATCGGCGGGAGATACCCGCGCAGGCCGACGTCGTAAACCGGCGTGCCGTCGGGGTAGAAACAGCCGTAGTATCTCTCGGATGTCGGGCCCCGGGTTGAGGTGCTCGTTGAACACGCGCACAAGACGTAACACGTCCGATGGGGGACCACAGCGCCAGCGGCGATCCCCGCGTAAACACAAAACACCGAAGAGGTGTCGACGTAAAACCGGGGAAACGCGGATCCCGGAACACTAGGGGCCCCAGAAGGGACAGCCTCGGAGAATACGATCAACCCGGTGGCACACTGCATCGGGAACGAGCAAGAGCGCAGAGGCAAAAAAGCTAGGGGCACCCACGACGGAGGATACACAGACAAAGCATACAACAAGATCACAAAC


gi|87009301|gb|CI313774.1|CI313774 CI313774 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone 

CTTGCTGGTTCTCGAACCAGTG
||||| |||||||. ||| |||
GAACGTCCAAGAGTATGGACAC

EST sequence (targeted fragment marked with yellow):
GCGTGGAAGTTAAGAGGAAAAATATATGATAGTTTCCACCGAATAATCAAGTGGGCTAGTTGGGACACATGGTCAGCGATTTGAGATACCTTGTCATTTACCTCTGTACATGTAGAAGTCAACTTATTACAGATATGTACATACCCAAGCAACTGCACTCTTTGCTTGCTGAGGAGACTGGAGTTAAGGACTTCACATTGCATTTGCATGTTCTTGGCTTTAATATATACGGATGACATGCCAGACAAAAAGTTAAAAGAAAGGTCGCGGCGAATGCAAGTCGAACGATCATGGATTAACCATGACACCTTGAAGCAAACATGGGTGAGGTTTGGCGAGTTGCTCTGCCTCAAGGGAGCAGGTCTCGCTCCCCACGCTATTGTTACTCTCAGGGACAGGGAGTGCCTCCTTGTTCTTACGGGGGGCACGGCATCGTACCCACAGGTATGAGAACCTGCAAGGCCGCTGGCTCGAAATGCACGCGGTATATAGGCTTTCTCCAAAG