| mature miRNA: GACCGTACGGGATAATCGATT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88977087|gb|CI024824.1|CI024824 CI024824 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c GACCGTACGGGATAATCGATT EST sequence (targeted fragment marked with yellow): TGCAGTCAAATGATTTTTCCGTGCAGTCAAAATGATTTTTCCGTGCGGATGATTTGTCCGTCTACACCCAAGTGTCTGGAAAAATCAATATTTTCGTGTGCGGATGGGCCAACCGTATGGGATACACGGGATAATCGATTATCCTGTGCGGTCAAATTATTCCGCCCGCACGAAACAAAAAAAAAAAAAAGCGGAAATCGCCGGCCCGCACGCAACCGGCCGCCGCAACTCGTCGGATCTGGGCGGGGCCCGCTCGCCGCCGCCTCGCTAGTCGTCACCACGCCACGCTCGCCCGGTCGCCGTCGTCGCCGTCGAGCCCGCCTGCCGCGACGACGAAGGTGAAGGTGGCGTTGTTGGGCCGCTGCGGGGAGTTCGGGCGGCAGATCCAGCGGACGACGGAGGCGGCCTCGCGGACGCGACGGCGCGAGAGGAGG | |||||||||
gi|88206898|gb|CI205214.1|CI205214 CI205214 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft GACCGTACGGGATAATCGATT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGATCTCAATTTACAATGTTCCTCTATTTTCTCGAAATGAGGTCATGTGCTATTACATTAGCGTCCACGTAATGAGGAACTTGAAAATTAAAGTTTGTTTTAAACATCACGACACTTTTCTTTGGCCAGTGTTTAGTGAAAACAACCACTACTACATGAACTATTTTTCCGGACGGTCAAATTCATTTTTCCGAGCGGGGATTTTGCCTGTCCGGAGACAGTCGTCTGAAAAAATGAAAATTTTTACGTGCGGTAGCTCAACCGCACAGGACAATCATTTTCCCGTGCGGTCGGGTTGATAATCATTTTCCCGTGCGATCGGGTTAAGTGGACCGCACGGGATAATCAAATAATGCGAACCGCACGGAAAAAAAAAACGAAAAAGTAAAAAAAAACCTAACCCTAGCCGGATTATCCCGTGTCGGTGCCGATCGTCGTCGTCGTTGCCGCGCCCGATGCCGCGAGAACCACGCCGCCGCTGCCCGAGCTCGCCGCTCCGGTCGGATCCGCGCCGGCGC | |||||||||
gi|300215793|gb|HO088419.1|HO088419 S123-T7promoter Subtracted cDNA library from Indica rice variety Suraksha Oryza sativa Indic GACCGTACGGGATAATCGATT EST sequence (targeted fragment marked with yellow): AGGCCGATGCGAGCGGGTGGCGATTTTCTTTTTTATTATTATTTTTTGTTTTTTTGGTTCTGTGCGGGTGGCATTATTTGACCATTATCCCGTACGGTCCACTTAACCCGACCACACGGAAAAATGATTATCCCGTGCGGTCGGCCCGTCCGCACGCGAAAATAATGATTTTTCCAGACGAGGAGCTGCAGGCGGGCCAGGTGACCGCACAGGATAATAATTCTAACCGCCCGGAAAAATGGGTATCGTAGTACTGACAAGTCCACCAACATCACAATCGTTCTCAAACACTGCGAAGAATGACCGTGCCGACCTAAGAAAATAATTTTACACAATTGACCACTGTGATCTACATTTAAAAAAAATAATGTAATAAAAAGATGCAATGAGTTTTTTCCCATCTTGATCTTCTCTTTTCGCCATATGCAGGCCACCTTCCACCAATGTTAGCCTAGCGCCCTCCTCTTGCACCGTGATGCCCGAACGCCTCGCTCCTATGATGATAACTACTCACCACTAGGTTTCCACCTCCAATAGCCTCACCTCAAGTAAGAATGGATTAACGAGCCAGCTCGGCTCGTTAAGGCTCGGTTTGTTCGACCTTATTATTTAATGAGCTAGCTTGGCTTGGCTCGTTAAAGTTAACGAGAAAAAAAGCTTAGCTCGACTTGGCTCGCGAAATAGCTCAAGCC | |||||||||
gi|88394909|gb|CI607636.1|CI607636 CI607636 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone GACCGTACGGGATAATCGATT EST sequence (targeted fragment marked with yellow): GATACTAGAACTCCGAACCAAACCGAGGGCAAGAGCATCCGATTCGCCGCCGCCTTCGTCTTCCTCGCAGGTATCCTTCAAATCTTCACCCCCCCTTGTGTTGTGTTCTGCGCCGCGATAGAATTCCCTTCCTGTTTGCTCGATCTGTACTGTCCTGCTCCTGGAGCCGATAGTTTAATTCTTTAGAATCCGATGAATACGTTGTGCTCATGATGATCGTGAGGAGGAGTAGATTTTGGCTTGTTTGATCGATTCTTCGCCTCTGGCTTGATGCGCCGTAGTCGATTCCCCCGTACTGTCGCCTTTGCGGGCGAGGGATCGGGTGAAATCGTGGTGCGGCGTCAACTCCTCGTGACTTCGCCCGTCGCCTCCGACGCCGCCGCCGACTGTGGGAACGCACGTCATCCCTC | |||||||||
gi|88454839|gb|CI511811.1|CI511811 CI511811 Oryza sativa (japonica cultivar-group) 9 leaf-stage leaf Oryza sativa Japonica Group GACCGTACGGGATAATCGATT EST sequence (targeted fragment marked with yellow): GGAAAATGAATATTTTTATATGCGGGCAGCCCAACCGTACAGGATAAACATTTTTCCATACGGTCGGATTAAGTGGACCGCACTGGATAATCGATTATCCCGTACGGTCAATTTATATCTCCCGCACGCAAAAAAAAAAACCCAAAAATAAAAAAAANGCGAACATNGTCGACTGCCCCCATCCGGCCGCCGCTGGAGACGTCGAGCCTGCCCGCCTCCCCCGAGCTCTCCGGCGAAANTCGTGAAAATANTACAAAAACTNCT | |||||||||
gi|29685605|gb|CB681880.1|CB681880 OSJNEf08J23.f OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf08J23 5', mRNA sequence GACCGTACGGGATAATCGATT EST sequence (targeted fragment marked with yellow): GCTGGAGGAGGCGCCTTAGCAGCTCGGTGAGCGGAGGAGCGGCGGCCGCGGGACGGGCGGCGGACGGCGCGGCGGCCGAGGCATCCCCGGCTCGGCGAAGGAGCGACAGGAGTGGGACAAGCGGCAGACGCCACGGCTGCCACGGCACCGCGCGGCTTGGCGAAGGAGCGATGAGCGGCGAGCGGCGCACGAGGCGACGGCCGGGCGATGTGGCAGCCGGGCTCGACGGCGACTTTCGATTTTTGTGTTTTTTTTATTTTCGGTTTTTTTATTCCGTGCAGGAGAAATAATTTGACCGCACGGGATAATCTATTAACCCGTGCGGTCCACTTAACCCGACCACACGGGAAAATGATTATCTTGTGCAGTTGGCCGCCCGCCACAAAATAAACCAACCACAAGGAAACAAT | |||||||||
gi|88219599|gb|CI219159.1|CI219159 CI219159 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft GACCGTACGGGATAATCGATT EST sequence (targeted fragment marked with yellow): ATACAGACGGTACGTTCTAGTTCATCTTCCATTCTACTGATCCTATCATGGCTTGGACTTGTTCTAAGTCTATATATGCATGTCTTCTAGTAGTAGCACTACTACAATACCCATTATTCCGGGCGGTAGGATAGATTATCCTGTGCGGTCACCCGGCCTGCCTGCAGCTCCTCGTCTGGGAAAATCTCTATCTCCACTCTCTTGTAGAGTGTGAACCCGATATTGCCTTCTGCTTTCATCATTTCTAGCAATAGTTGGCCTCCATGTTGTTGAAAAAAACTCATCAGTCTGTCTTAACAAAGCTTGTTTTCTAATGCTCCTTTTGTGCCGAATCACTTCCCATCCAAGGAAAGCAAACAGGCCACCCAACACACATGCAGCAATTCCTAGAGAGCGAAGATTTATCATTAGTCAAAAAAAGATTTAGGCAAGCATTTTAGCACCAGTGTTT | |||||||||
gi|29686439|gb|CB682714.1|CB682714 OSJNEf10F06.r OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf10F06 3', mRNA sequence GACCGTACGGGATAATCGATT EST sequence (targeted fragment marked with yellow): TCCCCCGTCAACGGCGGCGGTGGCCCCTCCCCTCCTCCCCGTGAGGGAGCAGTGGCTCGGCGGAAGCAGTGGCTCAGCGAGAGCGACCAGGAGGAGGAGAAGGTGGCGGCGGGAGAGGGCACGGGGGCAGCGTCGGCGGCTCTATTGGCAGGGCGCGACGGCTGCTGGCGGAGGTGACGCGGCAGCTCGGTGAGCGGAGGAGCGGCGGCCGCGGGACGGGCGGCGGACGGCGCGGCGGCCGAGGCATCGTGCGGCTCGGCGAAGGAGCGACAGGAGTGGGACAAGCGGCAGACGCCACGGCTGCCACGGCACCGCGCGGCTTGGCGAAGGAGCGATGAGCGGCGAGCGGCGCACGAGGCGACGGCCGGGCGATGTGGCAGCCGGGCTCGACGGCGACTTTCGATTTTTGTGTTTTTTTTATTTTTGGTTTTTTTATTCCGTGCAGGTGAAATAATTTGACCGCACGGGATAATCTATTAACCCGTGCGGTCCACTTAACCCGACCACACGGGAAAATGATTATCTTGTGCAGTTGGCCGCCCGCACGTGAAAATATTTATTTTTCCAGACGCGTGGGTCCAGACGGGGAAAACCTCCGCACGGAAAAATCAATTTGACCGCACGGAAAAAATAGTTTATGTAGTGGTGATTCTCTCCGCACGGAAAACGGAGCGGTCTATTATCACGTAATTTTTTTTAAAAATGGATCAAAAAAAAAAAAAAGGAAAAAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTTGTC | |||||||||
gi|87026653|gb|CI254759.1|CI254759 CI254759 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft GACCGTACGGGATAATCGATT EST sequence (targeted fragment marked with yellow): GCACAAGATAATCATTTTCCCGTGTGGTCGGGTTAAGTGGACCGCACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCACCTGCACGGAATAAAAAAACCAAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGCCCGGCTGCCACATCGCCCGGCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCGCCAAGCCGCGCGGTGCCGTGGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTCCTTCGCCGAGCCGCACGATGCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCCGCTCCTCCGCTCACCGAGCTGCCGCGTCACCTCCGCCAGCAGCCGTCGCGCCCTGCCAATAGAGCCGCCGACGCTGCCCCCGTGCCCTCTCCCGCCGCCACCTTCTCCTCCTCCTGGTCGCTCTCGCTGAGCCACTGCTTCCGCCGAGCCACTGCTCCCTCACGGGGAGGAGGGGAGGGGCCACCGCCGCCGTTGACGGGGGAGGGGAGGGGAAGGA | |||||||||
gi|29639592|gb|CB644601.1|CB644601 OSJNEb05O07.f OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb05O07 5', mRNA sequence GACCGTACGGGATAATCGATT EST sequence (targeted fragment marked with yellow): CTAGCTCCTCCTTCCCCTCCCCTCCTCCGTCAACAGCGGCGGCGGCCCCGGCGGTGGCGGCTGCTCCCCCTCCCCTCCTCCCCGTGAGGGAGTAGCGGCTCGGCGGGAGAAGGCTGCGGCGGCGGCTCCGTCGGCGAGGCGCGGCGGCTGCTGGCGAAGGGGTGTGGCGGCTGCTGGCGGAGGCGACGCAGTGGCTGCGGCGGGCGCGGGACGGGCGGCGGACAGCGCGGCGGCCGCGGCAGCGCGTTGCTCGGCGAAGGAGCGGCAAGCAGCGAGCGGCGCGCGAGGCGACGGCCAGGCGAGGCGGCAGCCTACGCAACTGGCGGCGGTGGGCGGGCTCGCGACGGCAACGGCGATAAGTTTCTCCTCCGCTCGTTGACGAGTTTCTGTAGTAGTTTCACGAGTTTCGCCGTAGAGCTCGGGGGAGGCGGGCAGGCTCAACGGCTCGCAGCGGCGGCCGGATGCGGGCAGTCGACGATGTTCGCGTTTTTTTTATTTTTGGGTTTTTTTTTTGCGTGCGGGAGATATAAATTGACCGTACGGGATAATCGATTATCCAGTGCGGTCCACTTAATCCGACCGTATGGAAAAATGTTTATCCTGTACGGTTGGGCTGCCCGCATATAAAAATATTCATTTTCCAGACGCGTGGGTCCAGACGGTTGGGGAGCAGTGGCGAAGAGGAGGGACGCGGCGGGTTGTACATCGCAGCCACTANCGGGAGGGAGGAGGAGTTTGGCGGCAGCATCGACATGGTTGC | |||||||||
gi|117210890|gb|CT844876.1|CT844876 CT844876 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD GACCGTACGGGATAATCGATT EST sequence (targeted fragment marked with yellow): CTCCCTTATCTCTTCCCCTTGTGGTTCCCTCCACACCTTCCACTCCTCCCCCTCCCCTCCTCCGCAGGCCAGCACGACGAGCTGGGCGCGGCGAAGGCCAGGCAAGGCAGCTAGTCGGCGTGGCGAGCGGGCGAGGCGGCGGCGAGCTGGGCGCGGCGACAGCCGGGCGAGGCGGCGGCTACTAGCGGAGGCGCGGCGGCCGCTCGCCCTCGCCGCTGCCTCGGGAGGCCCGCCTCGACGATGACAACGACGGCCTTGACGACGACGACCTCGACGGCGGACCTCGGCGAGCTCGTGACAACGATGACGGGCTCGCGGGAGACGGATCCGTCGTCGGTGGGCGCGATAGAAGTGAATCCATCGCCGGCGAGCTCGGGGGAGGTGGGCGGGCTCGTCAGCTCGCGGTGGCGACGGCCGGATGCGGGCAGGTGGCGATTTTCGCTTTTTTTTATTTTTGGTTTTTTTTGTTCCGTGCGGGTGGCATTATTTGACCGCACGGGATAATCCATTTAACCCGACCGCACGGAAAAATGATTATCCCGTGTGGTCGGCCCGTCCGCACGCGAAAATAATGATTTTTCCAGACGAGGAGCTGCAGGCGGGCTGGGCGACCACACAGGATAATCATTCCAACCGCCCGGAAAAATGGGTATTGTAGTAGTGTAATAACTTCTTCACCTGTATTTTTTTTTCTCAATCAATTATAACCTTCTATATATACTATTCAAATTATCCACAAAAAAAAAAAAAAAAAAGAAAGGCCAGCTTGGCCTCGAGGGGGGGGCCCGGTA | |||||||||
gi|88540248|gb|CI470278.1|CI470278 CI470278 Oryza sativa (japonica cultivar-group) whole body 3mM SA(salicylic acid) for 1day Or GACCGTACGGGATAATCGATT EST sequence (targeted fragment marked with yellow): GGAAAAATCAATATTTTCGTGTGCGGATGGGCCACCCGTATGGGATACACGGGATAATCGATAATCCTGTGCGGTCAAATTATTCCGCCCGCACGAAACAAAAAAAAAAAAAAAGCGGAAATCGCCGGCCCGCACGCAACCGGCCGCCGCAACTCGTCGGATCTGGGCGGGGCCCCCCTCGCCGCCGCCCCGCTAGTNGTCACCACGCAAC | |||||||||
gi|88212235|gb|CI211875.1|CI211875 CI211875 Oryza sativa (japonica cultivar-group) same as Lib 33(supermix) Oryza sativa Japonic GACCGTACGGGATAATCGATT EST sequence (targeted fragment marked with yellow): TTGATTAAACGTCGGATTATCCATTATCTAAATAATATACTCATATACAAATTAAGGTGTGATAACGACAAGAAATTCATACATTTTTGCATGCTTGAAGTTTAGAACGGTCATGAAAATCTTCGTCAATTTTGGATGAAGAATGTATCTCCTTTTTGGTTGACACTACTACAATACCCATTTTTCCATGCGGGTGTTTGGATTATCCCGTGCGGGGGTCCGGCCCGTTTGCAGCCGGTCGTCTGGAAAAATCGCCATTTTTGCGTGCGGGCGGGCTGACCGCACGGGATAATCGATTATCCCGTGCGGTCATGTTATACCAACCGCACGGAATAATAAAAAAAGGGAAAAGAATCAAAATCCACCCACGAACCCTAATAAAAAATCAACATCGTCAACGTCATCGCCGCCTTCCCGAAGCCTGCCGTCATCGTCGCCGCCTTCCCGAAGCCCGTCGCCGTCGTCCCCGCGGTGGCAGGCCACGGATCCGGCCTCCCCGCGGTGGTCTGCCACGGATACGCTCTGCCACCGCCTTAGCCGATGCAG | |||||||||
gi|88240697|gb|CI239859.1|CI239859 CI239859 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat GACCGTACGGGATAATCGATT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTGATCTCAATTTACAATGTTCCTCTATTTTCTCGAATGAGGTCATGTGCTATTACATTAGCGTCCACGTAATGAGGAACTTGAAAATTAAAGTTTGTTTTAAACATCACGACACTTTTCTTTGGCCAGTGTTTAGTGAAAACAACCACTACTACATGAACTATTTTTCCGGACGGTCAAATTCATTTTTCCGAGCGGGGATTTTGCCTGTCCGGAGACAGTCGTCTGAAAAAATGAAAATTTTTACGTGCGGTAGCTCAACCGCACAGGATAATCATTTTCCCGTGCGGTCGGGTTGATAATCATTTTCCCGTGCGATCGGGTTAAGTGGACCGCACGGGATAATCAAATAATGCGAACCGCACGGAAAAAAAAAACGAAAAAGTAAAAAAAAACCTAACCCTAGCCGGATTATCCCGTGTCGGTGCCGCTCGTCGTCGTCGTTGCCGCGCCCGATGCCGCGAGAACTACGCCGCCGCTGCCCGAGCTCGCC | |||||||||
gi|300215793|gb|HO088419.1|HO088419 S123-T7promoter Subtracted cDNA library from Indica rice variety Suraksha Oryza sativa Indic GACCGTACGGGATAATCGATT EST sequence (targeted fragment marked with yellow): AGGCCGATGCGAGCGGGTGGCGATTTTCTTTTTTATTATTATTTTTTGTTTTTTTGGTTCTGTGCGGGTGGCATTATTTGACCATTATCCCGTACGGTCCACTTAACCCGACCACACGGAAAAATGATTATCCCGTGCGGTCGGCCCGTCCGCACGCGAAAATAATGATTTTTCCAGACGAGGAGCTGCAGGCGGGCCAGGTGACCGCACAGGATAATAATTCTAACCGCCCGGAAAAATGGGTATCGTAGTACTGACAAGTCCACCAACATCACAATCGTTCTCAAACACTGCGAAGAATGACCGTGCCGACCTAAGAAAATAATTTTACACAATTGACCACTGTGATCTACATTTAAAAAAAATAATGTAATAAAAAGATGCAATGAGTTTTTTCCCATCTTGATCTTCTCTTTTCGCCATATGCAGGCCACCTTCCACCAATGTTAGCCTAGCGCCCTCCTCTTGCACCGTGATGCCCGAACGCCTCGCTCCTATGATGATAACTACTCACCACTAGGTTTCCACCTCCAATAGCCTCACCTCAAGTAAGAATGGATTAACGAGCCAGCTCGGCTCGTTAAGGCTCGGTTTGTTCGACCTTATTATTTAATGAGCTAGCTTGGCTTGGCTCGTTAAAGTTAACGAGAAAAAAAGCTTAGCTCGACTTGGCTCGCGAAATAGCTCAAGCC | |||||||||
gi|163926695|gb|EG713711.1|EG713711 Os6CPREST0156 6cm rice panicles Oryza sativa Japonica Group cDNA clone 6CPR-A3H05S, mRNA seq GACCGTACGGGATAATCGATT EST sequence (targeted fragment marked with yellow): GGCCATTACGGCCGGGCGGGATAAATCGATTATCCCGTGCGGTTGGACCGTCCGCACGCGAAAATGCCGATTTTCCCAGACGATTGGCTCCAGGCGGGCCGGACAACCGCTCGGAAAAATCAAAATGCCCGTTTGC | |||||||||