| mature miRNA: GAGGTCCCTCATCTTATCACC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|29641697|gb|CB646704.1|CB646704 OSJNEb09F04.r OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb09F04 3', mRNA sequence GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): ATAGGGGATGGGGGCCACGGTCTCCGCGCCACTGTACGCGGCGGGGGGGTCGCACCGCCTGCTTCTCGTCGCTCGTCCGCCATCACCGACCGCACGAGGGGGACGAGGAGGCCGGCGAGCTCGCGGCGCCCTGAGCCCGCGCGCCGCCACCGGGGAGTTGCCGTCGCCGGCCGCACCACCCTCCGGCCGCGCGCGCCGCCGCCTGTGCGAGAGCAGAGAGCGAGAGGAAGGAAGGAGAGAGAGAGAGGAGAAAAAGAGAGAGGGTGCTGACATGGTCTCCATGACCTGTGGGGCCCACGTGGGTCCCACGCTGAGTCAGCCGCCACGTGGGACAAAACCGGGGTCAAAACCGCCGAGGGACCTTCTGTGACCGGTTTTGTAAGTTGGGGGACGCTGGATGTCCGGTTTTGCGGTTCGGGGACGATTTTGTATCTCGCTGACAAGTTGAGGGACCTTGCGTGTACTTTTCCCATAGCACAATGGTAGCAAGCTGCAGCTATAGCCCCATGGGCCAGGGTTCGAATCCAATCTCTCCCAATTTTTTTTCCTTTTTCAGTTTCCCCTTTCTCTTTTATCTATCTTTATCTATATTTTTTCCCATTTCTCTTTTTTCTCTCTTTATTTATTTATATGTTATTTTTCTTTTCGGTTCTCATGGTTTCTTTTCTCTCTCTTTATCTATATTTTTCCTTTAAAAAAG | |||||||||
gi|88722506|gb|CI746016.1|CI746016 CI746016 Oryza sativa (japonica cultivar-group) 1 nuclei stage pistil Oryza sativa Japonica G GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): AAATGTCTATGTAAAGAACCTGTCTGAGAATACTACTGAAGATGACTTGAAGGAAATCTTTGGAAAATTTGGAACCATCACTAGCGCTGTTGTAATGCGTGAGGGAGATGGAAGATCCAAGTGTTTTGGATTTGTTAACTTTGAAAGTCCAGATGATGCTGCTCAGGCTGTCCAAGAGCTGAATGGCAAGAAGTTTGATGATAAGGAATGGTATGTTGGAAGGGCACAAAAGAAATCGGAAAGAGAGATGGAATTGAAAGAGAAATTTGAGAAGAACCTTCAAGAAGCAGCAGATAAGTATCAAAACACTAACCTGTACCTGAAGAACTTGGATGATAGTGTTGATGATGATAAGTTGAGGGAGCTTTTTGCTGAGTA | |||||||||
gi|29670319|gb|CB666594.1|CB666594 OSJNEd13I22.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd13I22 3', mRNA sequence GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): CTCCCCTTCTCCCACGTTGCAGCTGCCACCGCCTCTCCGCCAGCGCGCTCGCCCGCCAACGCCGCCTCGCCCTACCGACGCCCTCCCCTTCTCCCGTGTCTCCGCCACCGCGTCGCCGCCGCCGCCACATCACCGGCCGGCTGTCGGACCTCCTCGCCTCGGCGACCTCCTCCCCACCACCGGCTGGCCTGCCAGAGAGAAGAGTGAGTGAGAGAGAGAGAGAGAGAGGAGGAAGGGACAGGCCGGCCTGCTGATGTGGCTTGCTGACGTGGCATTCTGACATATAAGGCCCACACTGACTCAGTCGCCACGTCGGATCTAGTTTTTACTGGTTTATAAGTTAGGGGGTGTGTTATATCTGGTTTTTCGGTTGGTGGATGATTTTGTAAAGGGATGACAAGTTGAGGGACCTTCGGTGTACTTTTCCTTAAAGAG | |||||||||
gi|86859092|gb|CI277016.1|CI277016 CI277016 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): TCTATTTATTTTTTTATTTTTTGCTGACTAGGATGCCACGTCAGCAAAACCGGGAGCAAGGTACTACCATGGGACCTCCAGTGAACGGTTTGAGTGAGTTTAGGGGTGAACATTTCTAGTTTTATAGTTGAGGGATCTCAAAATAATCTCGCTGTTAAGTTGAGGGACCTCCGGTGAACTTATTCCTTTTTTTTTTGGGCCAAAGCCTTGTCCCTACACAAGCCTAGTTAGTTAGCCTAGGAAAAGTACACCGAAGGTCCATCAACTTGTAATCGGGTTACAAAATCACCCCCAACCACAAAACCGTTCATTTTAGGTACCGTTCATTTTAGGTTCCTCGGTGGTTTTGACCCGGTTTTATCCAACGTGGCGGCTGAGTCAGCGTGGGGAGGAGGCCTGCATGTCAGACAGTCCACGTCAGCCACTTCTTACCCTCCCTTTCAACTCACTTCCTCTCTCCTCTCCTCTCCACGTCGATGGCCGGCGGAGAGCAGCCAGGGCGCGACAGGACAGTGTGACGAGCGCGGTCGTCGGTGCAACAGAGGAGCACGTCGCGGTCGAGCGCCGCCATGGGCTCCCTTGTCTCTGACGCGCCTTCATCACC | |||||||||
gi|55409533|gb|CV721909.1|CV721909 YBH--05-L24.b1 Rice before heading yeast two hybrid lambda phage cDNA library (YBH) Oryza sat GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): GGCACGAGGGCCGCCTGCCTCCTCGGGCTTCGACGCGATCATGGTCGTCCTCCCGCCATTCGCCGCCGTCGGCGTCTGGTTCGTGCTCCAGGCCGCGCCGCACCGAAAGCAGAGTCCTCCTCGTCGACTTCTGATTAATGCTGCTGAAGAAGGGAGAGAACAGGGAAAGAGAGGAGGCTGATGGGGCCACGTTGACATGCGGGGGCCACGTGGGTCCCACGTTGACTTAGCCGCCACGTGGATAAAACCGGGGTCAAAACCACCAAAGGACCTACAATAAACGGTTTTTTAAATTGAGAGATGTCCTTTATCTGATTTTGCGGTTGGGGGAATATTTTGTAATAACTTGATGATAAGTTGAGGGACCTTCGGTGAACTTTTTCCAAAAAA | |||||||||
gi|38471504|gb|CF955635.1|CF955635 644rsiceb_0723.y1 Oryza sativa cv. PA64s leaf cDNA library Oryza sativa Indica Group cDNA 5', GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): GCACGAGGAGCTTGCCGCCTCCCGCGCCTCCGCCGGCTGCGCGTGTGGCTCCAGCTCCGCCGCCGCGCCAGAGAGAAGAAGAGAGAGAGAGAGAAGAGGAAGGGAGAGAAGAGGGGAAAGAAAGAGGAGGCTAACCTGGACAGGCTGACATGTGGGGTCCACGTGGGCCACGTAGGATAAAATCGGGATCAAAACCGCAGAGGGACATGTTGTGACCGGTTTTGTTTAGTTAAGGGACCCCGCATATCTGGTTTTGCTGATCGAAGATGTTTTTTTATCCCGATGACAAGTTGAGGGACCTTCGGTGTACTTATTCCTATATCACACTATCAATTCTGGCCCATCCTAGGATCTTATGAGGCCCATCCCAATAAG | |||||||||
gi|33689635|gb|CF317874.1|CF317874 HD--07-L15.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA library (HD) Oryza sativa J GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): AAGAAATATTGCGAAAGAAAGTGAAATGTCCTATCGTTTCAAAACACCGAAGGGTATACTGTGATCGGCTTTAATTAGTTGATATTTGGTTTTGTGGTTGGGGGGCGATTTTGTAACTAGATGACAAGTTGAGGGACCTTCGGAGTACTTTTTCCTTTTCTATTTTGCATACATGGGCTTTAGATTGGGCCTGAGACGTGGGCTGTTGGGCCGTCGAGTGTCACCAGAAGTCCAGAACCCTAACGAAGTAGCAGTCGCTGTTCTTCTTCCGCGGCAGGCCGCGGTAGACTCGTCTCGCTCCTTGGTGATTCTTGGCCGCCGCCGATTGGAAGCAGCGGAGCAGAGGGAGAGGGAGGAGGAGATGCCGACGCTGACGAAGCTGTACAGCTTG | |||||||||
gi|218493366|gb|FG968669.1|FG968669 MA_LYP9_07453 Mature embryo cDNA Library of LYP9 Oryza sativa Indica Group cDNA 5', mRNA seq GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): CCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAATCCAGATAAGTATCAAAACACTAACCTGTACCTGAAGAACTGGATGATAGTGTTGATGATGATAAGTTGAGGGAGCTTTTTGCTGAGTATGGCACTATTACTTCCTGCAAGGTGATGCGGGATCAAATGGTGTCAGCAGAGGTTCTGGATTTGTTGCGTTTAAATCTGCTGAAGATGCTTCCCGAGCTCTTGCCGAAATGAACAGCAAGATGGTTGGCAGCAAACCGCTCTACGTTGCGCTTGCACAGCGCAAGGAAGACAGGAAAGCAAGGCTGCAGGCACAATTTTCACAACTGAGGCCTGTCCCACTTGCTCCTTCAGTTGGTCCTCGCATGCCCATGTTTCCACCTGGTGTTCCTGGAGTTGGACAGCAACTGTTCTATGGTCAGCCCCCTCCAGCGTTTATCAACACACAGCCTGGTTTCGGCTTCCAGCAGCCTCTTATGCCTGGGATGAGGCCAGGTGCAGGTCCAATGCCGAACTTTATCATGCCTATGGTTCAGCAAG | |||||||||
gi|29681071|gb|CB677346.1|CB677346 OSJNEe14C23.f OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe14C23 5', mRNA sequence GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): GGAAAAAGTACATGTGAGGTCCCTCATCTTATCACCGAATTACAAAATTGTCCCTCAACCGAAAAACCAGATATATGATATCCCTTATCTTACAAAACCAGGTCAGTTTATGTCCTTTGGCGGTATTGACTCCGGTTTTATCCCATGCTGACTCAGCTATCACGTCGGATGAAACTGGAGTCAACCAGAATCAATATTGCCTAAGGACTTAAAGTGATCCGGTTTTATAAGTTGAGGGACGTTATATATCTGTTTTTTTCTTTGTTTGGGGATGATTTTGTGATTCGGTGAAAATATGAGCGACCTCAGATGCATTTTTTCCACAAAAAAAATCGCTTCATGATAGACAAAAAAATATATGGGCCAGATAACCAATGCAAGCAAAAAGCAGGAGTCCAACAGCACTTTAAAAGAGTCCATGAGGAATTTGGAAATAACAAACTCCTGTTGGCCTATTCTGGTATGTTGTCATATTTTTCCAATACCTGTTAATACTTAGTAATTTTATGAACGTTTGGACCCAGACAGCTTGAACCTTACTGCTTTCAAGATTCTGTACATCAGTTTGTAATTATGTGAACGTATGGACTTCGACACAAAAAACAACTCATGCATGTAATAATTCCCTTGATATGCAAAACTCCAAGCTTAATTTTTCAGTGTTTTAGATGCAAGGTTTCTTTTGATCATTTCCTTATGTGGTCTATATGTGCAGGGATGGTGTGAGCGAGTCTCAATTTAGCCAAGTACTGAATGTTGAGCTTAATCAAATTATAAAGGCATATCAATATATGGATCAGGGGCCAATTCCTAAGTTCACAGTGATCATTGCTCAAAAGAATCACCACACAAAACTTTTCCA | |||||||||
gi|88518630|gb|CI446284.1|CI446284 CI446284 Oryza sativa (japonica cultivar-group) germinating seeds Oryza sativa Japonica Group GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): GAGGGATCTCAAAATAATCTCGCTGTTAAGTTGAGGGACCTCCGGTGAACTTATTCCTTTTTTTTTTGGGCCAAAGCCTTGTCCCTACACAAGCCTAGTTAGTTAGCCTAGGAAAAGTACACCGAAGGTCCATCAACTTGTAATCGGGTTACAAAATCACCCCCAACCACAAAACCGTTCATTTTAGGTACCGTTCATTTTAGGTTCCTCGGTGGTTTTGACCCGGTTTTATCCAACGTGGCGGCTGAGTCAGCGTGGGGAGGAGGCCTGCATGTCAGACAGTCCACGTCAGCCACTTCTTACCCTCCCTTTCAACTCACTTCCTCTCTCCTCTCCTCTCCACGTCGATGGCCGGCGGAGAGCAGCCAGGGCGCGACAGGACAGTGTGACGAGCGCGGTCGTCGGTGCAACAGAGGAGCACGTCGCGGTCG | |||||||||
gi|88425360|gb|CI567080.1|CI567080 CI567080 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): GGTTGCCTCTCTTGTTGCTTGATGCTTTTAGGGAGAGTAGAGTGGTGTAGTGTAGTGTTGGATCCTCCTCCACATCTTGGAACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAAGTCTTCAAAGGCTTATCTTGGGTGAAGAAGCACCTGAAGCTTCCATCATTTTTGCTTTAATGGTGGTGGTCTTGGGGAAACTTCTGAAGAAATCTCCGGGGGAAAGATTGCTGCTTTGCTGCTGGTTTCGCGGCAGATCTTGATTGATTGCGTTGGAAGAGGTCGGCTTCGTGAAGGAATCTTGCTTGCGGGATCAATCGCCTCGCTCGCTTGCTTGCTTTTTGGGCGGTTCTTGGTGCTGCTTTATTGGGGTGAAAGGTTGGGGGATCTCGCGGCCACTCGAG | |||||||||
gi|29683160|gb|CB679435.1|CB679435 OSJNEf02O23.f OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf02O23 5', mRNA sequence GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): AGGATCATGTATTCTAACCGTGACCCCAGCTTGCGCAAGAGTGGCACAGCAAATATTTTTATCAAGAACCTTGATAAGTCGATAGACAACAAAGCTTTGTATGATACTTTCTGTGTGTTTGGAAACATTCTTTCATGTAAAGTTGCAACAGATGCTTCTGGAGAATCGAAGGGCTATGGCTTTGTTCAGTATGAGCGGGATGAGGCAGCTCAAGCTGCTATTGATAAACTCAATGGCATGCTTATGAATGACAAAAAGGTGTATGTTGGGCCTTTCATTCTTAAGCAGGAGAGGGATAATTCTCCAGGCCAGGTTAAGTTCAATAATGTCTATGTAAAGAACCTGTCTGAGAATACTACTGAAGATGACTTGAAGGAAATCTTTGGAAAATTTGGAACCATCACTAGCGCTGTTGTAATGCGTGAGGGAGATGGAAGATCCAAGTGTTTTGGATTTGTTAACTTTGAAAGTCCAGATGATGCTGCTCAGGCTGTCCAAGAGCTGAATGGCAAGAAGTTTGATGATAAGGAATGGTATGTTGGAAGGGCACCACACAAATCGGAAAGAGAGATGGAATTGAAAGAGAAATTTGAGAAGAACCTTCGAGAAGCAGCACATAAGTATCAAAACACTAACCTGTACCTGAAGAACTTGGATGATAGTGTTGATGATGATAAGTTGAGGGAGCTTTTTGCTGAGTATGGCACTATTACTTCCTG | |||||||||
gi|117249800|gb|CT863396.1|CT863396 CT863396 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): GTTGAGAGACCCCTAAAAGCTCGCTGGTAAGTTGAGGGACCTCCAGTGACCTTTTTCCTATGACAAAATGACAACGAATGCACGTTTGTCCTGCTTTCCTTTCCTGTTGCTTCCATAAAGATCACTGGGCCTGCTTGCTTTTCATGGCCCATGTATTGAATACGGTCACTCCTGACAGCTTATTTTCGAGGGCCTTTTGCAAATAGATAAATACCATGTGTTTCATTTTACATTGTTACACATTTTTTTTAAACACACGACCGACATATCTTCATAACTACCAAGTCATCATGCGACAATACTAGATGAGACGTTTTCTAAAACAACGGATCTCTTGTTCAGATTCGTGTTTCGCATGCACGCTTTTCAAACTACTAAACGATATGATTTTTTCAAAATATTTCTATACGAAAGGTGTTTAAATAAATCATATTAATCCATTTAATTTAAAAATTAGCTAACACTTAATTAATCACGCGATACTACATCGTCTTTTTTTTTTTCCATACGCAGGTGATTTGACAGCCTATTGCTTTTGCCGGTAACCTAACATCAAAGAAATTTCCTCAGCTGATCTATCTGAGCTTGTACTGTTACCTAAAATTCATTAAAGAAAACAAGCACATCAAACTTATAGCCATATTAAAGCCCACTTTTTCCGAAGTCCAATATAGCAGCTGCAGCCTACAGGCACGAACACGTCAGCAGTCCACGCCTCCACCACGGGTCCAAGCGTCCAAAACCGCCAAAAGACGTGTTCGGTCCGGCACATCGGGGGGGGATCCGACCCCGCCAGGTGGCCCACCCCTCCTCCACGTGTCGCGCCTCCGACCGTCCGATCAGCTGCCCACCCCGGGCTTCCCCGCGGACGGCATCCGACGGCCACGGTTTCCGTTCCGCACCCCCGTGCTGCTTTGCTCTTGCCAATTTGCGGAATTTGTGTTGCCCCCTTGCTCTCCCTCCCCTTCATTCCTATTCCACCCAACCCCCCGCGGGGTAAGGAAGGGCGTGGGGGGGTGGCGGGTCCTCTAAAAAGGGGGGCCCCGGAACCCAAATTCCCCCTAAAGGGGAGGCCAAATACCCCCCCCCCCCCGGGGCCCCCTTTTTTTAAAACCCCCGTG | |||||||||
gi|86504410|gb|CI147043.1|CI147043 CI147043 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): TTTTTTTTTGCGGTTCAAGGGACGATTTTGTAACTGGATGACAAGTTGAGGGACCTTCGGTGTACTTTTTTCCTATAGCCGCGCCTCACAACGCTTACAAGGCCTCATACTCGAGGCCCAATAGCTCACGGCCCAATGGCAACAAACGAAGTCTAAAATAGATCACAGAGAACTACAACAGAATCAGCAGCGTGACATTCCCCCCCTCCTTAACAACCAGTATGTCCCCAGGGCTGGTGCTTGAGGAAACCGTTGTCGTAGGTTCTTCCATGTCGCCAAATCGTCAGGTAGATTGGTCCAGCGTATTAGCCCATACGGCACAGGTGCACCACCCCTCTTGATCAGCTGACGACGGAGCACAACTTCTGGCTGGCAAGTCAGAGCACACTGGAATACCTGGCCTAATCGCCTTCTTGAGTAGTGAAACATGCACCACAGGGTGAATAAGACTGCCCTGAGGCAACTCCAAACGATAGTCCACTGCTCCAACGCGACCCAGAATCTTGTAAGGGCCAAAATAGCGAAAACTGAGTTTCTGACAAGACCGTTTTGCGACTGACATCTGCACATATGGTTGAAGTTTCAAGTAGACCAAATTACTAAATGACTCCGTA | |||||||||
gi|86412550|gb|CI066955.1|CI066955 CI066955 Oryza sativa (japonica cultivar-group) BAP treated callus Oryza sativa Japonica Grou GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): AACTCGATGACAAGCTGAGGGACCTTCGGTGTACTTTTCCCCAGAATTTACCATCCGCAATTAATACGGGCTTCGTATTGGCCCAATTGTTCGTCTCGGGCCAGTAAACACACTAAACGAACCGCGGCCCATGATATTTCAACGGTCCAGATTGATCGAACATACTAGTAGTAATAAGTCGATGCCATTTGAATAGTCATCTCCTCCAAAACCCTAACCCCTCCACTTTCTCTTCTCGCGCCGGCGCCATGACGCTCCTCGCCGCCATCACCAATCCCTCCGCCGCCGCCGCCGCCGCCGCCGTCGCGGCGAACCCCATCGTCCTCACTCCCGGCGCCGCTCCGCCACCGCCGACCTCCTCCGCGCTCCCCACCCAGATCCCGCCCTCCGACCGGTCCCTCTCCCC | |||||||||
gi|29677698|gb|CB673973.1|CB673973 OSJNEe08M15.r OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe08M15 3', mRNA sequence GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): CCCTCCCTAACCACTATCTCCACCTTCGCCTGCATACCATTTCACAATTAAAAAGATGATTTGCTTCTTTCTTTGTTTTGAGTTGAGCCAACTACCACCATTGATTGATGGGTTTACCTCCGCGATGCCGTTGCAGAGCTCCCTGAAGGCGAGGGCGAGCTGGAAGCCGCCGAGGCGTAGGCTGCGCAACCTCGCTGGCGGGCAGACGTGCAACAGCGTGATGTAGTCACTGGCGCGGATGAAGTTTTGGATGGCCCACTGCAGCGTGCCGCCATCGCCGATGGCAGCGACTGATGGCGGCGTCGTCGAGATGTGATGATGGCCGTAGCCGCGCGCCGCCCTGAACCCGCGCGCCGCCACCCGGGAGCCGCCGTCGCCGGCCGCGCGCGCCGTCGCCTGTGCGAGAGCAGAGAGCGAGAGGGAGGAAAGGAGAAGAGAAAAAAAAAAAAGAGAAGAGAGGAAAGAGAGCAGGAGCTGACAGGGACACCCTGCCATGTGGGGTCCACGTGGGTCTCACGCTGACTCAGCCGTCACGTGAGACAAAACCGGGTCAAAACAAGTTAGGGGATGTGTTGTATCGGTTTTATGGTTGGGGGACGATTTTGTAACTCGGTGACAAGTTGAGGGACCTTCGGTGTACTTTTTGCCTTCCGGGAGATGGTGAGATGGACAGCGCGACTTAGCTATAGTAGTTGGGCTCGGCCCATTTAGTCACACATTCACAGTGCCCACAGTGCGTGGAACACGAACGGACCGGGACTGCCTATAAAAAAGG | |||||||||
gi|58672808|gb|CK061494.1|CK061494 56297rsicek_1082.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): GCACGAGGTGACACTTCGGAGCCGCCTCCACCATGCGTGCGGTTGCCTGGATGCTCATCCATGGCCGTTCCTCGTGTGATGGGGGCCTGGGAACCGTATGTTGGTATTGTCTGATGTGGCATCTGTGCCATGGCATGAGCTCCTGTCAGTGATGAATGGCTATTTTGGACTTTCGGTCTCGATTTTGCAAAGTTCGCTGCTAACGCTAGCTTGAGCTCTAGTTTGCGGTTCAAGGACGATTTTGTAGCTCGATGACAAGTTGAGGGACCTTCGGTGTACTTTTTCCTATCGGACTCGTCTGTCTCGTCTCCTCTTCCTTCTCCCCCAGCAACACTCCCAATCTCACTCTTCTCCTCTAATCGCTAGGCCGCCGCGGCGGGTGGGTGGCAGAGAGCTGACTAACCGCGAGCCGAGCGA | |||||||||
gi|29645885|gb|CB650892.1|CB650892 OSJNEb15J16.r OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb15J16 3', mRNA sequence GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): AAGCCGGTCATGGCGCTCGTGCTGCTCGTCGTATGCATCGTCAGCTGTTTCGAGGTTGTCACTGCCCAGTACGACGGTTCTTCCAGCAACGGCGCAGCGGCGACGGGCCCCATGGCCGCCGGTGGGAACTGCTCACTTGTTGTTGCTGCCGCTGTGCTCGCCATCCCAGCGTTTGTCGGGAACTGAAACATTGAGATGGAAACGCTGCGACCGGCTGATGCGTGCGCTGCGGCTGTCGCCGTCCCGAGCGCGGGAGGCGGAGGAGAAGCTGGCGGCAGCACGGGCGAGCAGCGGCTGTCTCCCCGTGGACGGCCGCGTCGTCGCCGCCAACGAGAAGGTTCGCCGTCGCCGCCGGGTGGTTGTTGGTGTTGCTGACGCGGGATGTGGCCTCCATGGAACGGCCGCAGCCAGCCGCCGTCGCGGCGACACTCTCCTCCTCTCCCGCCTCACCCGGTGACCTCCTCTCCAGCCGCCGGCTTGCCCAGAGGAGAGGAGAGTGAAAGAGAGAGAGAGGAGGAAAGAGATAGATGACGTGCCATCCGGACTCGTGGGGCCCACGTGGGTCTCACGCTGACTAAGCCGCCACATAGAACCAAACCGGGATCAAAACCATCAAAGTACCTATTGTGACCGGTTTTGATTAGTTAAGGGACGACCGATATCTGGTTTTGCGGTTGGGGGATGATTTTGTGACTCGATGACAAGTTGAGGGACCTTCGGTGTACTTTTCCATAATTTATTTTATATAATTTATTACAAAAAAAG | |||||||||
gi|29637635|gb|CB642644.1|CB642644 OSJNEb02O21.r OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb02O21 3', mRNA sequence GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): ACGACACAAAGAGGGGACGAGGAGCAGTGTTTGGAGCAGCGACGACGAGACACGACGGCGTGGAGTGCGCTCCCCATCTCCTTTGATGCCTTCCATCGCGCCACCGTTGTCTCCACCGCCATCTCCCTTTTCGCCTTCTCCACCCGCCGCCGGTTTACCTCGCCGTCGCCCCTTTCCGCCCACCACCGGTTTACCTCATCATCGGCCCACTCCGCCCGCCGCCGCCCCGCTCCATCCTGCCGGCTCCATGCGCCGCCGCTCCACGGGTGGGATGAGAGAGAAGAGAGGGGATGAGAGAGGAGAGGATCGGAGAGAGGGGAGGGGATGAAGAGGCTGACGGGTGGGGGCCACGTGGGTCCCACCGTGAGTCAGCTGCCACGTGGACAAAACTGGAGTCAAAATCGCCGAGGGACCTACTTTGCACTGGTTTTATAAGATGAAGGATGCGCTACATCCGGTGTTTTGCGGTTAGGGGACGATCTTGTAACTCGATGACAAGTTGAGGGACCTTCGGTGTACTTTTTCCAGTATTAAATGGTCGACGTCACAGTTGGGTCGAGCTGGGTCGAGCTGACCTTTTTACCAGTTTAACAGGTTTGTCTAAATCTCTACTATTATAAAATTTTTGGTGTTACGTCATTCGTATTTAATAAATTTTTGGTGTTACGTCATTCGT | |||||||||
gi|218500549|gb|FG964038.1|FG964038 MA_LYP9_02822 Mature embryo cDNA Library of LYP9 Oryza sativa Indica Group cDNA 5', mRNA seq GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): CGCGGTGGCGGCGCCTAAACTAGTGGATCCCGGGCTGCAGGAATCGAATTCATCAAAACACTAACCTGTACCTGAAGAACTTGGATGATAGTGTTGATGATGATAAGTTGAGGGAGCTTTTTGCTGAGTATGGCACTATTACTTCCTGCAAGGTGATGCGGGATTCAAATGGTGTCAGCAGAGGTTCTGGATTTGTTGCGTTTAAATCTGCTGAAGATGCTTCCCGAGCTCTTGCCGAAATGAACAGCAAGATGGTTGGCAGCAAACCGCTCTACGTTGCGCTTGCACAGCGCAAGGAAGACAGGAAAGCAAGGCTGCAGGCACAATTTTCACAACTGAGGCCTGTCCCACTTGCTCCTTCAGTTGGTCCTCGCATGCCCATGTTTCCACCTGGTGTTCCTGGAGTTGGACAGCAACTGTTCTATGGTCAGCCCCCTCCAGCGTTTATCAACACACAGCCTGGTTTCGGCTTCCAGCAGCCTCTTATGCCTGGGATGAGGCCAGGTGCAGGTCCAATGCCGAACTTTATCATGCCTATGGTTCAGCAAGGACAACAGCCGCAGCGTCCGGCTGGTAGGCGTGCTGGTGCTGGTGGAATGCAGCAACCCATGCCAA | |||||||||
gi|88256702|gb|CI359090.1|CI359090 CI359090 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): GTCTGTCAATCTGGTACTTTCTTTTGCAGAATAGTATTTATACAGAAACTGAAAACAACAGATAGGCAGGCAGACAGACACAATGCAGAGGTGGGTGCTACGGTGATGGACCTCACCCAATATTCGTTGGGTTCCCCACTTTCACAACAGATCACTCCAGATCACCAACCCATTCATAACTTCTCCATATTTATATGCAAATGGAACCAACCCCCACCACCAGTGAATCATCAGGTACCTTATCGCAGCCAAACGATTGTATTGATGGTAAACGCTAACCCAAGCTCATTGACACAGGTACATAGCGGTATGGCATGGGTAAAGAGTACTATTTGACGCAAGTACAGAAAAGCGTTTGTGGGTCGTTCATACTGCATAAGCAATCACACGCATCCATCTATCTGTATCTCAAGTTCATGTCAAGCTCGGGCCCGTACATG | |||||||||
gi|58591029|gb|CF989337.1|CF989337 24441rsicee_7960.y1 Oryza sativa cv. LYP9 tillering whole plant cDNA library Oryza sativa Ind GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): GCACGAGGGATGATAAGTTGAGGGAGCTTTTTGCTGAGTATGGCACTATTACTTCCTGCAAGGTGAGTGGGGGATTCAAATGGTGTCATCAGAGGTTCTGGATTTGTTGCGTTTAAATCTGCTGAAGATGCTTCCCGAGCTCTTGCCGAAATGAACAGCAAGATGGTTGGCAGCAAACCGCTCTACGTTGCGCTTGCACAGCGCAAGGAAGACAGGAAGGCAAGGCTGCAGGCACAATTTTCACAACTGAGGCCTGTCCCACTTGCTCCTTCAGTTGGTCCTCGCATGCCCATGTTTCCACCTGGTGTTCCTGGAGTTGGACAGCAACTGTTCTATGGTCAGCCCCCTCCAGCGTTTATCAACACACAGCCTGGTTTCGGCTTCCAGCAGCCTCTTATGCCTGGGATTGAGGCCAGGTGCAGGTCCAATGCCGAACTTTATCATGCCTATGGTTCAGCAAGGACA | |||||||||
gi|88908506|gb|CI713065.1|CI713065 CI713065 Oryza sativa (japonica cultivar-group) 2 nuclei stage pistil Oryza sativa Japonica G GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): TCCTCGGTGATCTCTCTCCCCTTCCCAAAAAAAGTCGAGAGGGTTTTCGTGGTGGTGGTGGTGGTAGGGTTAGGGGTAGGAGGGGTCTCCACATGGCGGCGGCGGCGGCGGTGGCGAANTCGGTGGAGGCCGGCGGCGAACCGGGCGGTGGTGGTGGTGGTGCGTGGTCCACCGTCTCCCGCTCCGGCCGCTCCTCCTACTCCGCCGGTGGTGGCGTCGGCGGCGGGAAGGTGGGGGACCTCGCGGAGGGGTTGGCGGGNGGTGGAAGAATCGGCGGGGAAAACGGAGGGCTGGAAACAAGTACGAACATTCCCCGTGGAGGTGAGCGGCGAGGACGTGCCCCCGCCCGCG | |||||||||
gi|218505185|gb|FG963979.1|FG963979 MA_LYP9_02763 Mature embryo cDNA Library of LYP9 Oryza sativa Indica Group cDNA 5', mRNA seq GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): CTAGTGGATCCCCCGGGGCTGCAGGAATTCGAATTCCGCGCCTCCGCCGGCTGCGCGTNTGGCTCCAGCTCCGCCGCCGCGCCAGAGAGAAGAAGAGAGAGAGAGAGAAGAGGAAGGGAGAGAAGAGGGGAAAGAAACGAGGAGGCTAACCTGGACAGGCTGACATGTGGGGTCCACGTNGGCCACGTAGGATAAAATCGGGATCAAAACCGCAGAGGGACATGTTGTGACCGGTTTTGTTTAGTTAAGGGACCCCGCATATCTGGTTTTGCTGATCGAAGATGTTTTTTTATCCCGATGACAAGTTGAGGGACCTTCGGTGTACTTTTTCCTATATCAAACTATCAATTCTGGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|117235383|gb|CT854733.1|CT854733 CT854733 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): ATCTCTTGTATGGCTGTGGCCTGTAGTAGGCTGTAGCCCCAAACCTCTTGTCTCCTTTTCCCCTCCTCTCTCTCCCCCACTCTACTTCAGTTCTTTGCTTGTTTGCTAGCTTCTCTCATTGCCTCTCTTGTTGCTTGATGCTTTTAGGGAGAGTAGAGTGGTGTAGTGTAGTGTTGAATCCTCCTCCACATCTTGGAACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAAGTCTTCAAAGGCTTATCTTGGGTGAAGAAGCACCTGAAGCTTCCATCATTTTTGCTTTAATGGTGGTGGTCTTGGGGAAACTTCTGAAGAAATCTCCGGGGGAAAGATTGCTGCTTTGCTGCTGGTTTCGCGGCAAATCTTGATTGATTGCGTTGGAAGAGGTCGGCTTCGTGAAGGAATCTTGCTTGCGGGATCAATCGCCTCCGCTCGCTTGCTTGCTTTTTGGGCGGTTCTTGGTGCTGCTTTATTGGGGTGAAAGGTTGGGGGATCTCGCGGCCACTCGAGGTAGCGAGCGATCTCCCCGCGGCTTCTCCTCGTTGCCGGCATTGCGGGGGAGGCGAGCTCGCCGCCGGGTCGCTTGTTGATGCGGTGAGGCGGCGGAGCGGAGCTTCTCGCTGTGCTGCTGCTGCGGCGGCCGCCAGGTGTTCGGTGAAAGGCGCGAGCAAGCGAGCATGAGGGACTTCCCTTCCTGCTTCGGGGAGAGCGGCGTCCAGATCGCGGACGCGTCGTCGTCGTCGTCGAGCGCCGGAAAGGGCGCGGCGCAGAATCTGGTGACCTGCCTCTACCAGGCGCAGTTCTCGGGGCGGCCATGCGTGATCTCGGTGACCTGGAGCAAGAGCCTCATGGGGCAAGGGCTCAGCATTGGCGTGGACGATCTGTCCAACCAGTGCCTGTGCAAAGCAGACATCAAGCCATGGCTTCTCTCCAAGAAGAAGGGCTCAAGAGGCTTGACGTCGAGGACGGCAAGAATGAAATCTTCTGGGACCTGGCCGGGGGCCAAGTTTGGTGCTGGGCCACAAACAATGGAAAGGTTTTTTGTCCCCCCTGGGGGTTTTAAACCCTGAACGAAAACTCCTGTCCCGCGAACATAAAAAAAAGAAGCAATAACGAAAAAAACCGGCCAACCCCGGCCCAAAAGGTCAAAAGGTTGTATTTTTTGGGGTCAGGGGGGAAGAACCAATATTTTATGGGAAAAAAAAAAAAAATAACTTTTGCCCCGGGCGGGCAACAAAATCTTTTTTTGAAAAAAAAGGGTGCAACATACTCTCCCTTTT | |||||||||
gi|86830802|gb|CI293786.1|CI293786 CI293786 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): GATGATGATAAGTTGAGGGAGCTTTTTGCTGAGTATGGCACTATTACTTCCTGCAAGGTGATGCGGGATTCAAATGGTGTCAGCAGAGGTTCTGGATTTGTTGCGTTTAAATTTGCTGAAGATGCTTCCCGAGCTCTTGCCGAAATGAACAGCAAGATGGTTGGCAGCAAACCGCTCTACGTTGCGCTTGCACAGCGCAAGGAAGACAGGAAAGCAAGGCTGCAGGCACAATTTTCACAACTGAGGCCTGTCCCACTTGCTCCTTCAGTTGGTCCTCGCATGCCCATG | |||||||||
gi|163927609|gb|EG710749.1|EG710749 Os5MPREST2334 Rice young panicles Oryza sativa Japonica Group cDNA clone 5MPR-N1C04SA, mRNA GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): CGGCCGGGTGAGGGATAATTCTGTACCTCGATGACAAGTTGAGGGACCTTTGGTGTACTTTTTTCAAAACGAGCTGAGATCTCCTATACTTGATTACGCACGGCCCAGATATTCCGTATAACAAAAAAAAGT | |||||||||
gi|38478300|gb|CF962433.1|CF962433 13494rsiced_5140.y1 Oryza sativa cv. LYP9 trefoil whole plant cDNA library Oryza sativa Indic GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): GCACGAGGTGAAGAACTTGGATGATAGTGTTGATGATGATAAGTTGAGGGAGCTTTTTGCTGAGTGTGGCACTATTACTTCCTGCAAGGTGATGCGGGATTCAAATGGTGTCAGCAGAGGTTCTGGATTTGTTGCGTTTAAATCTGCTGAAGATGCTTCCCGAGCTCTTGCCGAAATGAACAGCAAGATGGTTGGCAGCAAACCGCTCTACGTTGCGCTTGCACAGCGCAAGGAAGACAGGAAAGCAAGGCTGCAGGCACAATTTTCACAACTGAGGCCTGTCCCACTTGCTCCTT | |||||||||
gi|86889606|gb|CI318797.1|CI318797 CI318797 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone GAGGTCCCTCATCTTATCACC EST sequence (targeted fragment marked with yellow): GTCTGTCAATCTGGTACTTTCTTTTGGAGAATAGTATTTATACAGAAACTGAAAACAACAGATAGGCAGGGAGACAGACACAATGTAGAGGTGGGTGCTACGGTGATGGACCTCACCCAATATTCGTTGGGTTCCCCATTTTCACAATAGATCACTCCAGATCACCAACCCATTCATAATTTCTCGATATTTATATGCAAATGCAACCAAGCCCCACCACCAGTGAATCATCAGGTACTTATGGGAGCAAAGGATTGTATTGATGGTAAACGCTAACCAAGCTCATTGAAACAGGTACATAGCGGTATGGTATGGGTAAAGAGTACTATTTGACGCAAGTACAGGAAACCGTTTCT | |||||||||