| mature miRNA: GAGGTGTCTAATTTCAGCGCC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|86479376|gb|CI122009.1|CI122009 CI122009 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo GAGGTGTCTAATTTCAGCGCC EST sequence (targeted fragment marked with yellow): ACAAAAGAAGGATTTCTTTTTAATTATTGAGATAACAGTCTGAACTCTAAAATGAGAAGTTCAGAGGTACACTTGAACACTTCACTCTACACCAACATGATGCATACTTGTACATATTCCTACGTGATAGAAATCTAGACGTACTGTGTCCAGTATCAAAGCAAGATTATGCAAGCCTAGGTACAGTAAAATAGAGATGATTGACAAAAATCCTAAAACACAATAATATTACAGCAGAGAAGAGAGGAGAAGAGCAGAGTGAATGAGGTAGTATATCCATTAATTTTGACAATTTAACCATTTGCAAAAACTATTTTTACAAACGAACCGTTGCCCAGACTTATTTCAAATCTGACCCTTTTGCTCAACGCCAAATCGTGTGGCGCTGGACTTAGACACCTCAGCGCCAAATGGCATGGCGCTAAATGTACGTTGGCACGCTGACTTAGTCTACCATCCGCCGTGGCACGGCATTCAGCGCCAGCTGAGCGCCACAAGATTTGGCGTTGAGCAAAAATGTCATTTTTGAAATAAGTTTTGGCAGCGGTTTATTTGTAAAAATAGTTTTTGCAAAGGGTTAAATCGTCAAAATTAATGTAGTATATCAGCATGACTAGCCAATTACGTCAGTAATCGTCGTCGTTCCT | |||||||||
gi|88219839|gb|CI219399.1|CI219399 CI219399 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft GAGGTGTCTAATTTCAGCGCC EST sequence (targeted fragment marked with yellow): CAGAAACTTTCGGCTGTGTCCTTTCCTCCGCCTTTCCAACTTCCACAAATTTTTGACAATTTAACCCTTTTCGAAAACTAATTTTACAAATAAATCGTGCCCAAACTTATTTAAAAAATGACGCTTTTGTTCAGCGTCAAATCGTATGGCGCTGAAATTAGACACCTCAACGCCAAATAGAACGACGCTGAATGCACGTTGGCACGCCGACTCAGTCTCTCGTCCGCGGTGACACGATATTCTGCGCCAATTGACGTAGCACTGAGGTGTCTAAGTTTAGCGACATACGATTTGACGCTCAACAAAAAGTGTCATTTTTAAAATAAGTTTTGGCCACGATTCATTTGTAAAATTAGTTTTTGGAAAGAGTCAAATTGTCAAAATTTGTGTTCCAACTCTTGTGTCCACATTTTTAAAACAAAATTATAGTAAAGTTTATTTTTAAAATACATATTAATCTATTTTCTTTAAATTGCTACAGCTGACATTTAATTAATCAT | |||||||||
gi|86900383|gb|CI296426.1|CI296426 CI296426 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c GAGGTGTCTAATTTCAGCGCC EST sequence (targeted fragment marked with yellow): TAATTTTGTTTTAAAAATGTGGACACAAGAGTTGGAACACAAATTTTGACAATTTGACTCTTTCCAAAAACTAATTTTACAAATGAATCGTGGCCAAAACTTATTTTAAAAATGACACTTTTTGTTTAGCGTCAAATCGTATGTCGCTAAACTTAGACACCTCAGTGCTACGTCAATTGGCGCAGAATATCGTGTCACCGCGGACGAGAGACTGAGTCGGCGTGCCAACGTGCATTCAGCGTCGTTCTATTTGGCGTTGAGGTGTCTAATTTCAGCGCCATACGATTTGACGCTGAACAAAAGCGTCATTTTTTAAATAAGTTTGGGCACGATTTATTTGTAAAATTAGTTTTCGAAAAGGGTTAAATTGTCAAAAATTTGTGG | |||||||||
gi|29675332|gb|CB671607.1|CB671607 OSJNEe05E07.f OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe05E07 5', mRNA sequence GAGGTGTCTAATTTCAGCGCC EST sequence (targeted fragment marked with yellow): GTTTGTCATGCCTACCGATCACTAGAGGTTTGGATTGGCTCAACACTGACAAAAAAAAATTGACAATTTGACCCATTTCCGAAAACTTATTTCGCAAATGAACCGCGCCTAAAATTACTTATTTCAAAAATGAACCGGAGGTTCAACGCCAAATGCTCCGGCGTTGAGCTTAGCCACCTCAGTGCCAGGTCAACCAGTGCTAAATGTCGTGTCACCGTGGATGGCAGGCCGACTCGGTGTGCCGACGTGTCAAAGTTTAGCGCCACCTGACTCGGCGCTGAGGTGTCTAAGCTCAGCGTCATTCAATCTGGCGCTGAGCTTCGAGACATTAAGGCCCACCTGCCCCGGCCGAGAGAGCGAGCTCTCTCATTTCTCTCCCTTCCCCGCTCCATGAAAACTACGACGGCGATGGCGGCGTTCCTCTCCGAGCCCTAATCCCCCTCTAACCCATGGGAAATCAAGGGGATTTGGAGGGGATTTCATGTGGAGGTTGTGGAGTAAGGTAACCTTCTCAAAATCCTCCTATATTTTCTTCATTTGGTGATTTGTTTTGGAGAAGAGCATGAACCCTAGGTTTGTCGTTTTTGTGAGACAAGGAAGATCGACTTCATTTATCGGTTAGGTGAGTTCTATAGGTTAATTTTGAGGGGATTTCATTCATCGGTACTGAACCCTAGTTGGTAGGATGGATTTGGTAGGTTCCAATGTAGGGTTTGGGAAGAATTTTTATTCTCATTGGCGATGTAGTATGTAGTGAATCGAATGAATGTGATGGTATGAAAGTTGTGCCACATTGT | |||||||||
gi|86874810|gb|CI325321.1|CI325321 CI325321 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone GAGGTGTCTAATTTCAGCGCC EST sequence (targeted fragment marked with yellow): GCATCACCAAACATTCATCCCAAATATATTTTGTCAAATGTATCAACAACAACCAAATGGATAAAGATATGCCACCTCCACACTTCATCCCCACCCACATTATCCATCTAATAATCCATCCTTAGCCAACTATTATCAAACCAGGTCTACAACCAAAACAATACAAAATATCCAATAAAACTTTGGGGAACTTAGGGTTTATAGAGGGGTTTACCTTCTCTTCCGATCCCAAACTCAATGCCACACAAATCACCTTCGATTAGAGAGGTTTTTGGGGGAGATTGGGCGAGGAGAACGCGGTGGCGACCGAACCCTAGGCGGGCGGCTGGGGAAAAACAGAGGACTAACTGGCTGGGGCGGCCTCGGCCGGGCTCAAAGTAGCCAAGATCAGCGCCAACGTACTTGGCGCTGATGTTGGGCACCTCAGCGCCGAAGCGGTTGGCGCTGAGGTAGCTGCCACGTCAG | |||||||||
gi|117230485|gb|CT847587.1|CT847587 CT847587 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD GAGGTGTCTAATTTCAGCGCC EST sequence (targeted fragment marked with yellow): ATGGATCCACTCCGCCACCGCCACCATCCACTCCCCCCACCGCTACCATCCCTCTCCTCCTCACATCCTCCGCGCCGCCTCCATCTCCGCCCCCAGCCACCTCTTCGCTGCGCCGACGGCAACGGCACCCCTCCACACATCCCCGCACACCCCTCCACCCGCCACCAACCAGGGAACTAGCTCCTCCTCCGCGCACGCAAAAGGAAAAAAATGGAAAAGAGGGGAAAAGAAAAACCTAGCTCGCCTCGGCTTCTCCGTCCGCGGGCATGATGGCGGAGATCGAGGTGGTCGGCGACGGCGGCGGCGCGGAGGGGCGAAGCAGGGGTGGTGGAGGGGAGGGAGGCGCGGGCGAACGGCGGGGAGGCGGACCCCGTGGTGGACATGTACTCCGCCGCGGCGTACAGGGACCTGGAGCGGCTGCGCGGGTTCGTGGAGCGGGAAGGTGGCGGCGGCGGCGCGTCGCTCGCCGCGCCCGACGGCAACGGCTACCACGCGCTCCAGTGGGCCGCGCTCAACAACTACCCCAAACGTCGCTCTCTACATCATCGAGGTCCAGCTGCTCTACTGCATGGACGCGACGTCAACGCTGGGGACAATGCGCAGCAAACGGCCCAGCACTGGGCGGCGGTGCCCAGAGCCATAGCTGCGGCGAAGCAGGAGATGAACGGAGGAGGGGAGGTAAAATATTGGGAGGAGTGGGTCACTGTATCCGGGTTTAAGAAAGAGCTGCCAGTCCAAGACTTAAGTTAAAGGGTTTGCCGCCGAACGAGAGGAGGGACCAAATTGGGTAGTTGAGCTTAGAATTTAATGGCAAGGTGAGTGAGGTTGCAGTTCAAGAGCTCAAACGATTAGGGCATTAACAAAAGTCGGCGGAAGAGGGGCCACAATATGGTCCAAGTGAAGGCAACTAATAAAACAGGTCGGGGGAGCTCAAGCCTACAGATGAGAGGGCAGGCGCACCAATGCGCCTGCCCTCCTGCCTATACAACCCTATCCCCCAGATTTTTTTCTGGTTCATAGTTTCTCGTATAGAGCAACCAGGTGAATGCTGAAACGGAACGGATTTTTTCAATTACTGCAGAGTGCAACTCATAGAACGCGACTGATGCTACTAACGGTATGACGGCGTTGGAGTTAGACGTCTGCGTTCGTGTAAAGGTGTGCGACTCTGAATTTCTTGAAGCGTGTAAAGTATAGTGGATAATGAGTGATGGACTCGCGTTAGGTAGAGGTGAAGTACATTTTTGTACTTTTTTCCGACTCTAGGAGAGCTGGCGAGACAAGAGGAGAGT | |||||||||
gi|117231727|gb|CT846993.1|CT846993 CT846993 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD GAGGTGTCTAATTTCAGCGCC EST sequence (targeted fragment marked with yellow): ATAGCCACCGTGATCGATCGATCCAACGACGGAAAACCGCCGCCGCGGCCGAATCCGAGCCCCGCCGGCGAGATCCTCGCGGCGGCCCGGCGGCCGGCGAGGCCCCACGCGCGCTCGCGCGCTCGTGCCTTCCTCGTCACGACACCCCTAGGTTCATCCTAGGAGGAGGGGAATTCGGATTTTGGATTTTGGGGCATCGTGTTAATGGCGGTGCGGCCGGGGTGGGCGGTGGCGGTGGCGCGGGCGTCGGCGGCGGCGTGGCAGCGCGTGGCGTGCAACCCGGAGACGCTCCCCGCCGACCAGGTCCTCGGGCTGCTCTGCTGCGCGCCGCTCCACCTCCTCGCCCGCCTCGCCGCGTTCCTCTGCATCCCCTTCGTCCCCGTCCAAGCCATGCCCCGCCTCCTCTCCCCTCGCCTGCAAGGCCACCCGCGCCGCCTCCTCCTCCTCCCGCCTCAGGAGTTCGTCGAAGTCGAACCTATGTACTCCCCTTTCCCTTCCTCCTCCTCGTCCTCGTCGGATGACGATGACGACAGCGACATCGAGGACGGGGAGATTGTTCATCTTCACTTCGATTGAGGTTCGCGGCTGGTCACTTACCGCCTTTGATTTCGTATCCATTTGTTCATAGTCTAGCAATCCTAGCGTGTGGAAAGGAATTGTGAATTGTGGAACTCTGGATAATATGTAGCTCTAGTGACAAATGACACAAATTCAGCTGAAATTTTCACAATTTGTCCCTTTGCAAAAACTTTTTTTACAAATGAACCGCTGCCCAAACTTATTTCAAAAATGACTCTTTTGGTCAGCACCAAATCCCCGGGCGCTGAACTTAGACACTTCAGCGCCATGTCCACTGGCGCTGGAAGGCGTGCCACCGCGGATGGGAGACTAAGTCACCTTGCCAATGCATATTTAGCGTCCCCCTATTTGGGCGCTGAGGTGTCTTAGGTTCAGCGCCCAGGGGTTTTTAAAAAAGGATTAAAGAAAAAATTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAGCGCCCCCTTGGGCCCCCCGGGGGGGGGGCCCCGCGGCCCCAATTTTCCCCCAATAAAGGGAGTCCTAATAAACCCGGCCCCCCTCCTCGGGCGCGCCGCTTTTTTTCACCCACCCCGCCGGGCCGGGGGGAGAAAAACCCGTGGGGGTTTTTCCTCCCATCATTATTATCCCCTTCCCGTGTTGTGGCACACAACCCCCCCCCCCCTCCTCTCTCCCCCAGGCGGCCGGGGGCGGGGGGAAAGGATATAGAAAAGAAG | |||||||||