| mature miRNA: GCGCTGAACTTAGACACTTCA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|86505884|gb|CI148517.1|CI148517 CI148517 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa GCGCTGAACTTAGACACTTCA EST sequence (targeted fragment marked with yellow): TAACCCTTTTCGAAAACTAATTTTACAAATAAATCGTGCCCAAACTTATTTAAAAAATGACGCTTTTGTTCAGCGTCAAATCGTATGGCGCTGAAATTAGACACCTCAACGCCAAATAGAACGACGCTGAATGCACGTTGGCACGCCGACTCAGTCTCTCGTCCGCGGTGACACGATATTCTGCGCCAATTGACGTAGCACTGAGGTGTCTAAGTTTAGCGACATACGATTTGACGCTAAACAAAAAGTGTCATTTTTAAAATAAGTTTTGGCCACGATTCATTTGTAAAATTAGTTTTTGGAAAGAGTCAAATTGTCAAAATTTGTGTTCCAACTCTTGTGTCCACATTTTTAAAACAAAATTATAGTAAAGTTTATTTTTAAAATACATATTAATCTATTTTTTAAAATTGCTACAGCTGACATTTAATTAATCATATGTTCCTTTTAGTCCGCAGAGATTTAGTTTTCGACCTGATTTGCCGTACACTGCCAGAAATTTCGTGAGAGAGCTTGATTTCGAAAATAATCATTGCTTTCCGAATAGTCTTGTCTTAAAAGAAAGAGCTTTTTTTTTACTTGGTTGAATTAGCTACAGCC | |||||||||
gi|88219839|gb|CI219399.1|CI219399 CI219399 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft GCGCTGAACTTAGACACTTCA EST sequence (targeted fragment marked with yellow): CAGAAACTTTCGGCTGTGTCCTTTCCTCCGCCTTTCCAACTTCCACAAATTTTTGACAATTTAACCCTTTTCGAAAACTAATTTTACAAATAAATCGTGCCCAAACTTATTTAAAAAATGACGCTTTTGTTCAGCGTCAAATCGTATGGCGCTGAAATTAGACACCTCAACGCCAAATAGAACGACGCTGAATGCACGTTGGCACGCCGACTCAGTCTCTCGTCCGCGGTGACACGATATTCTGCGCCAATTGACGTAGCACTGAGGTGTCTAAGTTTAGCGACATACGATTTGACGCTCAACAAAAAGTGTCATTTTTAAAATAAGTTTTGGCCACGATTCATTTGTAAAATTAGTTTTTGGAAAGAGTCAAATTGTCAAAATTTGTGTTCCAACTCTTGTGTCCACATTTTTAAAACAAAATTATAGTAAAGTTTATTTTTAAAATACATATTAATCTATTTTCTTTAAATTGCTACAGCTGACATTTAATTAATCAT | |||||||||
gi|29675332|gb|CB671607.1|CB671607 OSJNEe05E07.f OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe05E07 5', mRNA sequence GCGCTGAACTTAGACACTTCA EST sequence (targeted fragment marked with yellow): GTTTGTCATGCCTACCGATCACTAGAGGTTTGGATTGGCTCAACACTGACAAAAAAAAATTGACAATTTGACCCATTTCCGAAAACTTATTTCGCAAATGAACCGCGCCTAAAATTACTTATTTCAAAAATGAACCGGAGGTTCAACGCCAAATGCTCCGGCGTTGAGCTTAGCCACCTCAGTGCCAGGTCAACCAGTGCTAAATGTCGTGTCACCGTGGATGGCAGGCCGACTCGGTGTGCCGACGTGTCAAAGTTTAGCGCCACCTGACTCGGCGCTGAGGTGTCTAAGCTCAGCGTCATTCAATCTGGCGCTGAGCTTCGAGACATTAAGGCCCACCTGCCCCGGCCGAGAGAGCGAGCTCTCTCATTTCTCTCCCTTCCCCGCTCCATGAAAACTACGACGGCGATGGCGGCGTTCCTCTCCGAGCCCTAATCCCCCTCTAACCCATGGGAAATCAAGGGGATTTGGAGGGGATTTCATGTGGAGGTTGTGGAGTAAGGTAACCTTCTCAAAATCCTCCTATATTTTCTTCATTTGGTGATTTGTTTTGGAGAAGAGCATGAACCCTAGGTTTGTCGTTTTTGTGAGACAAGGAAGATCGACTTCATTTATCGGTTAGGTGAGTTCTATAGGTTAATTTTGAGGGGATTTCATTCATCGGTACTGAACCCTAGTTGGTAGGATGGATTTGGTAGGTTCCAATGTAGGGTTTGGGAAGAATTTTTATTCTCATTGGCGATGTAGTATGTAGTGAATCGAATGAATGTGATGGTATGAAAGTTGTGCCACATTGT | |||||||||
gi|86900383|gb|CI296426.1|CI296426 CI296426 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c GCGCTGAACTTAGACACTTCA EST sequence (targeted fragment marked with yellow): TAATTTTGTTTTAAAAATGTGGACACAAGAGTTGGAACACAAATTTTGACAATTTGACTCTTTCCAAAAACTAATTTTACAAATGAATCGTGGCCAAAACTTATTTTAAAAATGACACTTTTTGTTTAGCGTCAAATCGTATGTCGCTAAACTTAGACACCTCAGTGCTACGTCAATTGGCGCAGAATATCGTGTCACCGCGGACGAGAGACTGAGTCGGCGTGCCAACGTGCATTCAGCGTCGTTCTATTTGGCGTTGAGGTGTCTAATTTCAGCGCCATACGATTTGACGCTGAACAAAAGCGTCATTTTTTAAATAAGTTTGGGCACGATTTATTTGTAAAATTAGTTTTCGAAAAGGGTTAAATTGTCAAAAATTTGTGG | |||||||||
gi|29675332|gb|CB671607.1|CB671607 OSJNEe05E07.f OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe05E07 5', mRNA sequence GCGCTGAACTTAGACACTTCA EST sequence (targeted fragment marked with yellow): GTTTGTCATGCCTACCGATCACTAGAGGTTTGGATTGGCTCAACACTGACAAAAAAAAATTGACAATTTGACCCATTTCCGAAAACTTATTTCGCAAATGAACCGCGCCTAAAATTACTTATTTCAAAAATGAACCGGAGGTTCAACGCCAAATGCTCCGGCGTTGAGCTTAGCCACCTCAGTGCCAGGTCAACCAGTGCTAAATGTCGTGTCACCGTGGATGGCAGGCCGACTCGGTGTGCCGACGTGTCAAAGTTTAGCGCCACCTGACTCGGCGCTGAGGTGTCTAAGCTCAGCGTCATTCAATCTGGCGCTGAGCTTCGAGACATTAAGGCCCACCTGCCCCGGCCGAGAGAGCGAGCTCTCTCATTTCTCTCCCTTCCCCGCTCCATGAAAACTACGACGGCGATGGCGGCGTTCCTCTCCGAGCCCTAATCCCCCTCTAACCCATGGGAAATCAAGGGGATTTGGAGGGGATTTCATGTGGAGGTTGTGGAGTAAGGTAACCTTCTCAAAATCCTCCTATATTTTCTTCATTTGGTGATTTGTTTTGGAGAAGAGCATGAACCCTAGGTTTGTCGTTTTTGTGAGACAAGGAAGATCGACTTCATTTATCGGTTAGGTGAGTTCTATAGGTTAATTTTGAGGGGATTTCATTCATCGGTACTGAACCCTAGTTGGTAGGATGGATTTGGTAGGTTCCAATGTAGGGTTTGGGAAGAATTTTTATTCTCATTGGCGATGTAGTATGTAGTGAATCGAATGAATGTGATGGTATGAAAGTTGTGCCACATTGT | |||||||||