| mature miRNA: GGCTCACCATTGCAGGAGGAA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88359606|gb|CI621137.1|CI621137 CI621137 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone GGCTCACCATTGCAGGAGGAA EST sequence (targeted fragment marked with yellow): ACGCTCCCTTCTCCTCCCCTTCCCGTGACAAACAGTCCCCAATCCACCGCCTCCGTATAAGTATCCCTTCCTTACCGCCGGCCAGCCAGAGGCACCGCCTCCCCAACCCCAACCCGATCCCCTCCCAGACGTAGGGGCGCAGAAGGAACCGTCTTCTAAAAGGAGGAGGAGGGCTACCTCTCTCTCTCTCTCTTCTGCAATGGGGAGCTTCGCGAGGAAGGAGCACCAGTTCCTCGAAGCGCTTGGACCTCGCGCCGGGGAAACCCGGGTCCTTCGCCTGGGGCGCATGGGGCGGTAGGGCCCCGTAGTCACGTCAACCAACCCGACTAACAAACAGGTGATAGGGGAGGTTGTGGAGGGGTGGGCGCGTC | |||||||||
gi|86849422|gb|CI299643.1|CI299643 CI299643 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c GGCTCACCATTGCAGGAGGAA EST sequence (targeted fragment marked with yellow): CGGATGAGGAGCAAGAGAGATACCGAGGCGAAGATTGCAGACCTAGAGTTCCGGGTATCGAGCTACGAACTCAACATGCAAGAGGAGGTGGCAAGGAAGGTTGATGAACGCATGGCCGCACATCGGTCCCATGATCCCCAGCCGACCATTCCTCCTGCAATGGTGAGCCCGTCAGGAAACCGTAGCAGCTGCGCCTCAACGGGGCAGGTAGGATCACAGAGCATGGACGCCATGCAAACACAGGACGAATCGACCTGTCCCGTTGATGACATCACTCAGCGGACACCATGTGAGCTGCATATTCCTTTCAAGAACTTATCACTAAAGGTAAGATTTAGCCATTCCGCTAGTTGCTGCTTATATATGTTGATTACTAATAAATAATCTCTCACAACAT | |||||||||
gi|29635219|gb|CB640228.1|CB640228 OSJNEa13M20.f OSJNEa Oryza sativa Japonica Group cDNA clone OSJNEa13M20 5', mRNA sequence GGCTCACCATTGCAGGAGGAA EST sequence (targeted fragment marked with yellow): GCTACCAGTCAACTAACGGACGCAGTGGAAGCCTCTTCTCAGGGCACATTCCGACACGACAGAGAGAAGGACGAGCTGTCACTCGCCCTACAGACTCCCGAGCATCCAGGACGAACACGAGGGAAAGGCGTGATTCCCTGGAAGATTAGATTCAAGGAGGACATCCACACGTACAGGAGTTGGATGAGGAGTAAGAGAGATATCGAGGCGAAGATTGCAAATCTTGAGTACAGGGTATCGAGCTACGAGCTCAGCATGCAAGAGGAGGTGGCAAGGAAGGTGGATGAATGCATGGCCGCACATCGGTCCCAGAATCCCCAGCCGTACATTCCTCCTGCAATGGTTAGCCCATCAGGCAATCGTAGCAGTTGCGCCTCAACGGGGCAGGTAGGATCACAGAGCATGGACGCCATGCAAACCCAGGATGAAACCACTTGCCCCGTTGATGACATCACTCAGCGGACACCATGTGAGCTGCATATTCCCTTCAAGAACTTATCAATCAAGGTATGCTCGTAGTTTTATGATTNTTGACTTGTACATTCCGCAAGGTTCTGC | |||||||||
gi|29639400|gb|CB644409.1|CB644409 OSJNEb05J20.f OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb05J20 5', mRNA sequence GGCTCACCATTGCAGGAGGAA EST sequence (targeted fragment marked with yellow): GCGTCGGATACCTCCTGCAATGGCGAGCGAGAGCCCGCCGCTCTCGCTGCAGCCGGCCTACCTCTCGGGGAGGTCCGCGCGCGCGCGCCGCCCGCCGCCCGCCGTCCGCTGCAGCGCCGTCGGAGAGGTTATGGCGGAGACGGCGGCGGTCGGGACGGCGGAGGAGCCGCTGCTGGTGAGCGCGATCAAGGGGAGGAAGGTCGAGAGACCGCCGGTCTGGCTCATGAGGCAGGCCGGGAGGTACATGAAGAGCTATCAATTGCTCTGCGAGCGACATCCTTCATTCCGTGAAAGATCAGAAAATGTTGACCTTGTTGTTGAGATCTCTCTACAACCATGGAAGGTTTTCAAGCCCGATGGAGTTATCCTGTTCTCAGATATCCTTACACCGCTTCCTGGGATGAACATACCTTTTGACATTGTGAAAGGAAAAGGTCCAGTGATATTTGATCCCTTGAGAACAGCAGCTGCTGTGAATGAGGTCAGAGAATTTGTTCCAGAGGAGTGGGTCCCATATGTTGGGCAGGCTTTAAACATTTTGCGGGAAGAGGTTAACAATGAAGCTGCCGTGTTGGGCTTTGTTGGAGCTCCCTTTACATTGGCATCCTATTGTGTTGAAGGAGGTTCATCAAAAAACTTTTCAAAGATTAAGAAAATGGCCTTCTCAGAACCAGAGATTCTGCATAATTTGCTACAGAAATTTACTACGTCCATGGCTAACTACATTAAATACCAAGCTGACAACGGAGCACAAGCTGTCCAAATTTTTGACTCATGGGCTAC | |||||||||
gi|29627277|gb|CB632288.1|CB632288 OSIIEb10G23.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb10G23 3', mRNA sequence GGCTCACCATTGCAGGAGGAA EST sequence (targeted fragment marked with yellow): AGGCTAGCTTGATGAGAGGGTATCGAACCGGCAACAGCCAATTGGTCGGAACGATCGAAGTTCTGGTACTACGCTCACGGTGGAACGCTCAACCCAGCTGATGGCTCACTGGTCTTCGGCGATCAGATACGAGAGGCTGCGCGACGACTAACAGATGCAGTGGAAGCCTCCTCTCAGGGCACGTTCCGACCAGACAGAGATAGGGACGAGCTGACACTTGCCCTGCAGACTCCAGAGCATCCAGGACGAACACGAGGGAAAGGGGTGATTCCTTGGAAGATTGGTTTCAAGGAGGACATCCACACGTACAGGAGTCGGATGAGGAGCAAGAGAGATACCGAGGCGAAGATTGCAGACCTAGAGTTCCGGGTATCGAGCTACGAACTCAACATGCAAGAGGAGGTGGCAAGGAAGGTTGATGAACGCATGGCCGCACATCGGTCCCATGATCCCCAACCGACCATTCCTCCTGCAATGGTGAGCCCGTCAGGAAACCGTAGCAGCTGCGCCTCAACGGGGCAGGTAGGATCACAGAGCATGGATGCCATGCAAACACAGGACGAATCGACCTGTCCCGTTGATGACATCACTCAGCGGACACCATGTGAGCTGCATATTCCTTTCAAGAACTTATCAATAAAGGTAAGATTTAGCCATTCCGCTAGTTGCTGCTTATATATGTTGATTACTAATAAATAATCTCTCACAACATGAAGGTGGTGTCGGGCATGGCCATCCCAACGGACCCTTCAGGTACTTACCACTGCAGGCCGATTCGCAGCAGGATACTCGAAGGTCGAAGTTGAGTTGGTCGAAGGGGGGTACGAGGACCTCGAGGGGGGGCCCGGTACCCAGCTTTGT | |||||||||